Prupe.5G215400_v2.0.a1

PAN-like domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
16944721 .. 16945947
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G215400.1

Sequence Viewer

Length: 417 bp
ATGCCCAACTCAGGGGAACTATTGATTTCATTTCTAATGGCAATGAGAGGAGCAGTGCTTGATTGGGCTAAACGCTTCAACATTATTCAAGGTGTTGCTAGAGGACTTGTTTATCTCCACCATGATTCCTGTTTGAAGGTGTTGGATGAGAAGATGAGCCCAAAATTTTCAGATTTTGGATTCGCACGTATCTTTCAAGGGAGACAGAATCTAGCAAACACTCAATCAGAAGGTTGTGGGAACTCTTGTGCGGCTATATGTCCCTGGAGTATGCCTGCCATGGGCGGGGTATTTTCTGAAAAATCTCATGTATATAGCTTCGGGGTCTTGCTATTGAAGATTATTGGTGACAGAAAAAATACCAGCTTCTCCTATATTTACCTTCCAAAGCTCAGTCTATCCTCTACCACAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

139

Amino Acids

15.23

Weight (kDa)

9.18

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 251, 285
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 4 cut(s) 11, 12, 281, 285
AgsI TTSAA 5 cut(s) 79, 89, 136, 197, 337
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 3 cut(s) 318, 366, 391
AluI AGCT 3 cut(s) 318, 366, 391
Alw26I GTCTC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 99, 212
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 263, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 12, 281, 285
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 263, 279
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 4 cut(s) 11, 12, 281, 285
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 24, 406
BseRI GAGGAG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 4 cut(s) 11, 12, 281, 285
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 2 cut(s) 251, 285
BspCNI CTCAG 2 cut(s) 23, 405
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 263, 279
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 10, 392
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 276
CviAII CATG 3 cut(s) 122, 280, 308
CviJI RGCY 6 cut(s) 68, 159, 254, 318, 366, 391
CviKI_1 RGCY 6 cut(s) 68, 159, 254, 318, 366, 391
DdeI CTNAG 2 cut(s) 10, 392
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 125, 283, 311
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 121, 279, 307
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 99, 212
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 286
Hin1II CATG 3 cut(s) 125, 283, 311
HinfI GANTC 3 cut(s) 125, 180, 208
HphI GGTGA 1 cut(s) 359
Hpy188I TCNGA 3 cut(s) 172, 229, 298
HpyAV CCTTC 3 cut(s) 130, 224, 392
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 10, 392
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 125, 283, 311
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 142, 250, 277, 288, 376
MaeI CTAG 2 cut(s) 99, 212
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 347
MboII GAAGA 2 cut(s) 163, 349
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 41, 95, 412
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 279
NlaIII CATG 3 cut(s) 125, 283, 311
NmuCI GTSAC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 125, 180, 208
PkrI GCNGC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
SatI GCNGC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 161
SetI ASST 8 cut(s) 94, 141, 190, 235, 320, 368, 384, 393
Sse9I AATT 1 cut(s) 164
SsiI CCGC 2 cut(s) 251, 285
SspMI CTAG 2 cut(s) 99, 212
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 190
TasI AATT 1 cut(s) 164
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 3 cut(s) 125, 180, 208
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 60
XapI RAATTY 1 cut(s) 164
XspI CTAG 2 cut(s) 99, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.