Prupe.5G238500_v2.0.a1

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0024259
Physical Location & Seq
Forward (+)
18023574 .. 18026409
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G238500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1269 bp
ATGCTATTTAATTCATACAGAACCATTCCCATGCAAGCCAAGCAAGTCATTTGGTGTAGATTAATGGGGAGCAACAATTTCATCGCGGATATTAATCCAGATTCCATGGAGATGGAGACCATGATGGAAAGTCGACCAAGTGATAATATCAATATCTCCAAGAAAAATTCCACTGCTCCTCAAAATATATATCATCAGATCTTCGCCGGTTCCTGGAATGTTGGAGGTGTTTCACCTCCCGAGGTTTTGGACATACAAGAGTGGCTCAGACCGAATCATATTAACCCTCCTGCTAATATCTACGTTCTTGGGTTTCAAGAGATTGTGCCACTGAATGCAGCAAATATTGTTGTAAGATCTGAAAACCGCAAGATTTGCGAGAAATGGAATTCATTGATTAGGGCAGCTCTTAATGACCCTGACCCTAAGAATAATATTACACAAGACTTCCGATGCATAATTAGTAAGCAAATGGTCGGAATATTGTTATCTGTTTGGGTTAGGAGTGATCTCTGCCAATACATTAGACAGCTCAGTGTCTCATGTGTTGGCTGTGGTCTCATGGGTTGCCTAGGGAACAAGGGTTCGGTGTCAGTTAGATTTTGGCTGCATGAAACAAGCTTTTGCTTTGTGTGTAGTCATCTTGCTTCCGGAGGAAAAGAAGGTGATCAACGACGCAGAAACGCAAACGCAGCTGAGATTTTATCTCGCACAACCTTTCCTCCCGGGCCCTTCCCTAATTTCACCACTAAAATTCTTGATCACGATAGGGTGATCTGGCTTGGAGACTTGAACTATAGAATCTACTTGCCTGACGCCACAACGCAGTATCTTGTGGAGAAGCAAAAGTGGAACCTTTTGTTGGAATATGATCAGCTAAAGGTGGAACTCATGGAAGGACATGTATTCGAAGGTTGGCATGAAGGAGTAATAAACTTCGCCCCTAGCTACAAATATTACAAGAATTCGGAACTTTACTTTGGCTGCGATGAGAAGAGAAAACACAATAAAAGGCGTGCTCCAGCATGGTGTGATCGAATCATATGGTTCGGGAAGGGACTAAAGCAAAACCAGTATGACAGAGGCGAATTGAAGTTGTCGGACCATAGACCTGTCCGGGCGATTTTTATGGCAGAAATTAAGGTCTTAAGAGATCCTACAGGATTTCAAAGCTTTCTGTCAGACAGAATTATTTGCTTGCCAAACCATTTTGAAGAATGTTTCAATGACAAATATTCATGTAAATGGAGATCAAACTTCCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

423

Amino Acids

48.93

Weight (kDa)

8.65

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024259)

Species Orthologous Gene IDs
malus_domestica MD06G1234000.v1.1 MD14G1240700.v1.1
prunus_persica Prupe.5G238500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AccII CGCG 1 cut(s) 86
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 2 cut(s) 86, 367
AclWI GGATC 1 cut(s) 1148
AcsI RAATTY 4 cut(s) 166, 388, 753, 964
AcyI GRCGYC 1 cut(s) 816
AfiI CCNNNNNNNGG 2 cut(s) 213, 862
AflII CTTAAG 1 cut(s) 1147
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 6 cut(s) 317, 793, 1093, 1169, 1214, 1225
AjnI CCWGG 1 cut(s) 212
AjuI GAANNNNNNNTTGG 4 cut(s) 845, 877, 963, 995
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
AluBI AGCT 7 cut(s) 407, 532, 621, 695, 877, 948, 1173
AluI AGCT 7 cut(s) 407, 532, 621, 695, 877, 948, 1173
Alw21I GWGCWC 1 cut(s) 1021
Alw26I GTCTC 4 cut(s) 110, 544, 563, 780
AlwI GGATC 1 cut(s) 1148
Ama87I CYCGRG 2 cut(s) 239, 725
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 1 cut(s) 728
ApaI GGGCCC 1 cut(s) 732
ApeKI GCWGC 5 cut(s) 338, 404, 607, 692, 984
ApoI RAATTY 4 cut(s) 166, 388, 753, 964
AseI ATTAAT 2 cut(s) 62, 93
AspA2I CCTAGG 1 cut(s) 571
AspS9I GGNCC 3 cut(s) 728, 729, 1102
AsuC2I CCSGG 3 cut(s) 726, 727, 1118
AsuHPI GGTGA 4 cut(s) 225, 677, 736, 784
AsuII TTCGAA 1 cut(s) 909
AvaI CYCGRG 2 cut(s) 239, 725
AvaII GGWCC 1 cut(s) 1102
AvrII CCTAGG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 1021
BbvI GCAGC 5 cut(s) 350, 416, 594, 704, 971
BccI CCATC 2 cut(s) 106, 118
BciT130I CCWGG 1 cut(s) 214
BclI TGATCA 3 cut(s) 667, 760, 871
BcnI CCSGG 3 cut(s) 726, 727, 1118
BcoDI GTCTC 4 cut(s) 110, 544, 563, 780
BfaI CTAG 2 cut(s) 572, 945
BfmI CTRYAG 2 cut(s) 796, 1158
BfrI CTTAAG 1 cut(s) 1147
BglII AGATCT 2 cut(s) 198, 356
BisI GCNGC 5 cut(s) 339, 405, 608, 693, 985
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 5 cut(s) 340, 406, 609, 694, 986
Bme1390I CCNGG 4 cut(s) 214, 726, 727, 1118
Bme18I GGWCC 1 cut(s) 1102
BmeT110I CYCGRG 2 cut(s) 239, 725
BmgT120I GGNCC 3 cut(s) 728, 729, 1102
BmiI GGNNCC 3 cut(s) 211, 730, 854
BmrFI CCNGG 4 cut(s) 214, 726, 727, 1118
BmsI GCATC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 909
BpuMI CCSGG 3 cut(s) 726, 727, 1118
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 816
BsaI GGTCTC 2 cut(s) 110, 563
BsaJI CCNNGG 4 cut(s) 105, 240, 571, 725
BsaWI WCCGGW 1 cut(s) 650
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 862
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 1072
Bse8I GATNNNNATC 1 cut(s) 93
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 105, 240, 571, 725
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 213, 862
BseMII CTCAG 3 cut(s) 280, 547, 687
BseNI ACTGG 1 cut(s) 1072
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 732
BseXI GCAGC 5 cut(s) 350, 416, 594, 704, 971
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 730
BsiHKAI GWGCWC 1 cut(s) 1021
BsiHKCI CYCGRG 2 cut(s) 239, 725
BsiSI CCGG 4 cut(s) 207, 651, 726, 1117
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 2 cut(s) 213, 862
BsmAI GTCTC 4 cut(s) 110, 544, 563, 780
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 730
Bso31I GGTCTC 2 cut(s) 110, 563
BsoBI CYCGRG 2 cut(s) 239, 725
Bsp119I TTCGAA 1 cut(s) 909
Bsp120I GGGCCC 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 732, 1021
Bsp13I TCCGGA 1 cut(s) 650
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 86, 367
BspANI GGCC 1 cut(s) 730
BspCNI CTCAG 3 cut(s) 279, 546, 688
BspEI TCCGGA 1 cut(s) 650
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 211, 730, 854
BspPI GGATC 1 cut(s) 1148
BspT104I TTCGAA 1 cut(s) 909
BspTI CTTAAG 1 cut(s) 1147
BspTNI GGTCTC 2 cut(s) 110, 563
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 1072
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 105, 240, 571, 725
BssNI GRCGYC 1 cut(s) 816
BssT1I CCWWGG 2 cut(s) 105, 571
Bst2UI CCWGG 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 989
BstACI GRCGYC 1 cut(s) 816
BstAFI CTTAAG 1 cut(s) 1147
BstAPI GCANNNNNTGC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 909
BstC8I GCNNGC 3 cut(s) 36, 1017, 1199
BstDEI CTNAG 4 cut(s) 266, 426, 533, 696
BstDSI CCRYGG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 86
BstMAI GTCTC 4 cut(s) 110, 544, 563, 780
BstMWI GCNNNNNNNGC 3 cut(s) 40, 375, 692
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 4 cut(s) 212, 724, 725, 1116
BstSFI CTRYAG 2 cut(s) 796, 1158
BstSLI GKGCMC 1 cut(s) 732
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 350, 416, 594, 704, 971
BstX2I RGATCY 3 cut(s) 198, 356, 1153
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 3 cut(s) 198, 356, 1153
BsuRI GGCC 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 2 cut(s) 67, 1002
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 171, 329, 541
Cac8I GCNNGC 3 cut(s) 36, 1017, 1199
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 728, 729, 1102
Cfr9I CCCGGG 1 cut(s) 725
CseI GACGC 2 cut(s) 684, 824
DdeI CTNAG 4 cut(s) 266, 426, 533, 696
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Eco130I CCWWGG 2 cut(s) 105, 571
Eco24I GRGCYC 1 cut(s) 732
Eco31I GGTCTC 2 cut(s) 110, 563
Eco47I GGWCC 1 cut(s) 1102
Eco88I CYCGRG 2 cut(s) 239, 725
EcoO109I RGGNCCY 1 cut(s) 729
EcoRI GAATTC 2 cut(s) 388, 964
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 105, 571
EcoT22I ATGCAT 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 2 cut(s) 105, 571
FaqI GGGAC 1 cut(s) 1071
FauNDI CATATG 1 cut(s) 1043
FbaI TGATCA 3 cut(s) 667, 760, 871
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 339, 405, 608, 693, 985
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 5 cut(s) 339, 405, 608, 693, 985
FspBI CTAG 2 cut(s) 572, 945
GluI GCNGC 5 cut(s) 339, 405, 608, 693, 985
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 1 cut(s) 730
HapII CCGG 4 cut(s) 207, 651, 726, 1117
HgaI GACGC 2 cut(s) 684, 824
Hin1I GRCGYC 1 cut(s) 816
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 619, 1171
HinfI GANTC 4 cut(s) 101, 274, 801, 1038
HpaII CCGG 4 cut(s) 207, 651, 726, 1117
HphI GGTGA 4 cut(s) 225, 677, 736, 784
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 8 cut(s) 198, 269, 361, 452, 479, 970, 1102, 1183
Hpy188III TCNNGA 7 cut(s) 98, 239, 317, 651, 758, 764, 1051
Hpy8I GTNNAC 1 cut(s) 134
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 6 cut(s) 656, 742, 890, 905, 917, 1048
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 34, 338, 456, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 375, 692
HpyF3I CTNAG 4 cut(s) 266, 426, 533, 696
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 650
Ksp22I TGATCA 3 cut(s) 667, 760, 871
LmnI GCTCC 3 cut(s) 69, 181, 1024
Lsp1109I GCAGC 5 cut(s) 350, 416, 594, 704, 971
LweI GCATC 1 cut(s) 443
MaeI CTAG 2 cut(s) 572, 945
MaeII ACGT 1 cut(s) 303
MboII GAAGA 3 cut(s) 193, 1006, 1226
MflI RGATCY 3 cut(s) 198, 356, 1153
MhlI GDGCHC 2 cut(s) 732, 1021
MmeI TCCRAC 4 cut(s) 202, 457, 843, 1080
MnlI CCTC 8 cut(s) 189, 218, 235, 246, 297, 647, 732, 1076
Mph1103I ATGCAT 1 cut(s) 458
MroI TCCGGA 1 cut(s) 650
MseI TTAA 7 cut(s) 9, 62, 93, 282, 411, 1140, 1148
MslI CAYNNNNRTG 3 cut(s) 29, 110, 1243
MspA1I CMGCKG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 1147
MspI CCGG 4 cut(s) 207, 651, 726, 1117
MspR9I CCNGG 4 cut(s) 214, 726, 727, 1118
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 40, 375, 692
NciI CCSGG 3 cut(s) 726, 727, 1118
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 1043
NlaIV GGNNCC 3 cut(s) 211, 730, 854
NsiI ATGCAT 1 cut(s) 458
NspI RCATGY 1 cut(s) 905
NspV TTCGAA 1 cut(s) 909
PciI ACATGT 1 cut(s) 901
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 4 cut(s) 101, 274, 801, 1038
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 5 cut(s) 340, 406, 609, 694, 986
PscI ACATGT 1 cut(s) 901
PshBI ATTAAT 2 cut(s) 62, 93
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 211, 730, 854
PspOMI GGGCCC 1 cut(s) 728
PspPI GGNCC 3 cut(s) 728, 729, 1102
PsuI RGATCY 3 cut(s) 198, 356, 1153
PvuII CAGCTG 1 cut(s) 695
RseI CAYNNNNRTG 3 cut(s) 29, 110, 1243
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 7 cut(s) 9, 62, 93, 282, 411, 1140, 1148
SatI GCNGC 5 cut(s) 339, 405, 608, 693, 985
Sau96I GGNCC 3 cut(s) 728, 729, 1102
ScrFI CCNGG 4 cut(s) 214, 726, 727, 1118
SduI GDGCHC 2 cut(s) 732, 1021
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 2 cut(s) 796, 1158
SfuI TTCGAA 1 cut(s) 909
SinI GGWCC 1 cut(s) 1102
SmaI CCCGGG 1 cut(s) 727
SmiMI CAYNNNNRTG 3 cut(s) 29, 110, 1243
SmlI CTYRAG 1 cut(s) 1147
SmoI CTYRAG 1 cut(s) 1147
SsiI CCGC 2 cut(s) 86, 367
SspI AATATT 5 cut(s) 346, 436, 483, 956, 1235
SspMI CTAG 2 cut(s) 572, 945
StyD4I CCNGG 4 cut(s) 212, 724, 725, 1116
StyI CCWWGG 2 cut(s) 105, 571
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 133, 909, 1036
TaqII GACCGA 1 cut(s) 286
TfiI GAWTC 4 cut(s) 101, 274, 801, 1038
Tru1I TTAA 7 cut(s) 9, 62, 93, 282, 411, 1140, 1148
Tru9I TTAA 7 cut(s) 9, 62, 93, 282, 411, 1140, 1148
TscAI CASTG 3 cut(s) 178, 336, 541
TseI GCWGC 5 cut(s) 338, 404, 607, 692, 984
TspDTI ATGAA 5 cut(s) 70, 381, 627, 936, 1227
TspMI CCCGGG 1 cut(s) 725
TspRI CASTG 3 cut(s) 178, 336, 541
Vha464I CTTAAG 1 cut(s) 1147
VpaK11BI GGWCC 1 cut(s) 1102
VspI ATTAAT 2 cut(s) 62, 93
XapI RAATTY 4 cut(s) 166, 388, 753, 964
XceI RCATGY 1 cut(s) 905
XmaI CCCGGG 1 cut(s) 725
XmaJI CCTAGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 572, 945
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.