Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017749

Physical Location & Seq

Genomic Coordinates Reverse (-)

638748 .. 639149

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAACCCATTTTACATATTTCTTGGGCAACACCACAGAAATTATGTTCTCAGGTTGGCCAGGCCAGAGCCTTGAGTCTTACATGTTGGCCTTAGTGTCCGTCTTTCTGCTCTCTTTGGTGGTAGAGTGGCTTTCGCACACGAAATTGATCGATGGATCTACCGCAGATCATTATGTTTCTGATGGGCTTAAGCAAACCTTGATGTATGCTATTAGGGTTGGATTGGCTTATTTGGTAATGCTAGCAGTCATGTCGTTCAACGTTGGTGTTTTACTTGCTGCAATTTCTGGATATTCAGTTGGCTTCTTGATTTTTGGTAGTAGGGTTTTCATGAGATCGAAGAAGATAGTGCCTAATATGGATCAAACTGATGATCTTACTCCAATCAATTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

134

Amino Acids

14.76

Weight (kDa)

6.24

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017749)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G007600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0067001
rosa_laevigata	RLG00000035902
rosa_multiflora	Rmu_co8359369.1_g000001 Rmu_sc0001698.1_g000010 Rmu_sc0006583.1_g000023
rosa_roxburghii	Rroxscaffold_1G00014110
rosa_rugosa	Rorug05G0380700
rosa_samantha	Rh5AG440300 Rh5BG457400 Rh5CG479400 Rh5DG472000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	166, 372
AcoI	YGGCCR	1 cut(s)	59
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	61
AlwI	GGATC	2 cut(s)	166, 372
AoxI	GGCC	3 cut(s)	59, 64, 90
ApeKI	GCWGC	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	149, 179
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	3 cut(s)	61, 66, 92
BshVI	ATCGAT	1 cut(s)	153
BsnI	GGCC	3 cut(s)	61, 66, 92
Bsp143I	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	61, 66, 92
BspCNI	CTCAG	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	333
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	166, 372
BspTI	CTTAAG	1 cut(s)	191
BssMI	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
Bst2UI	CCWGG	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	52, 94
BstKTI	GATC	6 cut(s)	153, 161, 172, 341, 367, 379
BstMBI	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	61, 66, 92
BsuTUI	ATCGAT	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	1 cut(s)	333
ClaI	ATCGAT	1 cut(s)	153
CviAII	CATG	3 cut(s)	85, 253, 334
CviJI	RGCY	8 cut(s)	61, 66, 72, 92, 133, 190, 230, 306
CviKI_1	RGCY	8 cut(s)	61, 66, 72, 92, 133, 190, 230, 306
DdeI	CTNAG	2 cut(s)	52, 94
DpnI	GATC	6 cut(s)	152, 160, 171, 340, 366, 378
DpnII	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
EaeI	YGGCCR	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	88, 256, 337
FaiI	YATR	8 cut(s)	19, 47, 86, 177, 210, 254, 335, 362
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	3 cut(s)	84, 252, 333
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	61, 66, 92
Hin1II	CATG	3 cut(s)	88, 256, 337
HinfI	GANTC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	291, 310, 334
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	52, 94
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	88, 256, 337
Kzo9I	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
LpnPI	CCDG	5 cut(s)	39, 48, 75, 80, 276
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	264
MalI	GATC	6 cut(s)	152, 160, 171, 340, 366, 378
MboI	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
MboII	GAAGA	2 cut(s)	355, 358
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	4 cut(s)	42, 146, 285, 391
MluNI	TGGCCA	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	61
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	63
NdeII	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	88, 256, 337
NspI	RCATGY	1 cut(s)	88
PagI	TCATGA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	6 cut(s)	150, 158, 169, 338, 364, 376
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	3 cut(s)	58, 203, 267
SmlI	CTYRAG	2 cut(s)	74, 191
SmoI	CTYRAG	2 cut(s)	74, 191
Sse9I	AATT	4 cut(s)	42, 146, 285, 391
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	153, 341
TasI	AATT	4 cut(s)	42, 146, 285, 391
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	17, 322
TspGWI	ACGGA	1 cut(s)	91
Vha464I	CTTAAG	1 cut(s)	191
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.