Rroxscaffold_1G00014110

Ctr copper transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017749
Physical Location & Seq
Forward (+)
17453447 .. 17458542
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014110.1

Sequence Viewer

Length: 426 bp
ATGAAAACCCATTTCACATTTTTCAGGGGCAAAAACACCACAGCAATTATATTCCCGGGATGGCCCGGAGAGAGCCTTGAATCCTACATCTTAGCCTTAATAGCTGTCTTTCTGCTCTCTTTGGTGGTTGAGTGGCTTTCTCACGCTAGATTGATCGAGCCTAGTTCGGATAATAATATCGCTGATGGACTTCGACAGACCTTGGTGTATGGTACCAGAGTCGGACTGTCTTATTTGGTAATGCTTGCAGTCATGTCATTCGATGTTGGTGTTCTACTAGCTGCAATTGCAGGATGTTCAGTTGGGTTCCTGGTGTTTGGTACCGAGCTGAATATCGATAAGCCGGCTTTGTCGACCTCAATATGGCCAGGTTCGAATTCCGTTGGTTCGGCTGCTCGGCCCAAAATGCTAGCCCTAAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

141

Amino Acids

15.18

Weight (kDa)

7.9

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 57 - 106 3.8e-09 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017749)

Species Orthologous Gene IDs
prunus_persica Prupe.6G007600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0067001
rosa_laevigata RLG00000035902
rosa_multiflora Rmu_co8359369.1_g000001 Rmu_sc0001698.1_g000010 Rmu_sc0006583.1_g000023
rosa_roxburghii Rroxscaffold_1G00014110
rosa_rugosa Rorug05G0380700
rosa_samantha Rh5AG440300 Rh5BG457400 Rh5CG479400 Rh5DG472000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 212, 320
AccB1I GGYRCC 2 cut(s) 212, 320
AccI GTMKAC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 2 cut(s) 214, 322
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 309, 367
AluBI AGCT 3 cut(s) 104, 281, 328
AluI AGCT 3 cut(s) 104, 281, 328
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 3 cut(s) 62, 365, 398
ApeKI GCWGC 2 cut(s) 281, 392
ApoI RAATTY 1 cut(s) 376
Asp718I GGTACC 2 cut(s) 212, 320
AspS9I GGNCC 2 cut(s) 63, 399
AsuC2I CCSGG 3 cut(s) 56, 57, 66
AsuII TTCGAA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 367
BanI GGYRCC 2 cut(s) 212, 320
BbvI GCAGC 2 cut(s) 268, 379
BccI CCATC 2 cut(s) 54, 179
BciT130I CCWGG 2 cut(s) 311, 369
BcnI CCSGG 3 cut(s) 56, 57, 66
BfaI CTAG 4 cut(s) 147, 162, 278, 410
BisI GCNGC 2 cut(s) 282, 393
BlsI GCNGC 2 cut(s) 283, 394
Bme1390I CCNGG 5 cut(s) 56, 57, 66, 311, 369
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 63, 399
BmiI GGNNCC 3 cut(s) 214, 308, 322
BmrFI CCNGG 5 cut(s) 56, 57, 66, 311, 369
BmtI GCTAGC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 3 cut(s) 56, 57, 66
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 55, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 343
BseBI CCWGG 2 cut(s) 311, 369
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 55, 201
BseGI GGATG 2 cut(s) 65, 299
BseLI CCNNNNNNNGG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 268, 379
BshFI GGCC 3 cut(s) 64, 367, 400
BshNI GGYRCC 2 cut(s) 212, 320
BshVI ATCGAT 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 56, 66, 344
BslI CCNNNNNNNGG 1 cut(s) 363
BsnI GGCC 3 cut(s) 64, 367, 400
BsoBI CYCGRG 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 374
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 3 cut(s) 64, 367, 400
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 214, 308, 322
BspOI GCTAGC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 212, 320
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 55, 201
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 311, 369
Bst4CI ACNGT 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 246, 345, 411
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 65, 299
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 101, 287, 406
BstNI CCWGG 2 cut(s) 311, 369
BstSCI CCNGG 5 cut(s) 54, 55, 64, 309, 367
BstV1I GCAGC 2 cut(s) 268, 379
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 3 cut(s) 64, 367, 400
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 2 cut(s) 65, 299
Cac8I GCNNGC 3 cut(s) 246, 345, 411
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 63, 399
Cfr9I CCCGGG 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 2 cut(s) 213, 321
CviAII CATG 1 cut(s) 253
CviQI GTAC 2 cut(s) 213, 321
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 309, 367
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 256
FaiI YATR 4 cut(s) 50, 210, 254, 364
FatI CATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 282, 393
FokI GGATG 2 cut(s) 72, 306
Fsp4HI GCNGC 2 cut(s) 282, 393
FspBI CTAG 4 cut(s) 147, 162, 278, 410
GluI GCNGC 2 cut(s) 282, 393
HaeIII GGCC 3 cut(s) 64, 367, 400
HapII CCGG 3 cut(s) 56, 66, 344
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 2 cut(s) 80, 219
HpaII CCGG 3 cut(s) 56, 66, 344
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 169, 224
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 248, 284, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 287, 406
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 1 cut(s) 256
KpnI GGTACC 2 cut(s) 216, 324
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 268, 379
MaeI CTAG 4 cut(s) 147, 162, 278, 410
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MfeI CAATTG 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 4 cut(s) 45, 285, 376, 421
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 367
MroNI GCCGGC 1 cut(s) 343
MscI TGGCCA 1 cut(s) 367
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 367
MspI CCGG 3 cut(s) 56, 66, 344
MspR9I CCNGG 5 cut(s) 56, 57, 66, 311, 369
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 311, 369
MwoI GCNNNNNNNGC 3 cut(s) 101, 287, 406
NaeI GCCGGC 1 cut(s) 345
NciI CCSGG 3 cut(s) 56, 57, 66
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 343
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 3 cut(s) 214, 308, 322
NmeAIII GCCGAG 1 cut(s) 376
NspV TTCGAA 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 283, 394
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 309, 367
PspGI CCWGG 2 cut(s) 309, 367
PspN4I GGNNCC 3 cut(s) 214, 308, 322
PspPI GGNCC 2 cut(s) 63, 399
RsaI GTAC 2 cut(s) 214, 322
RsaNI GTAC 2 cut(s) 213, 321
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 2 cut(s) 282, 393
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 63, 399
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 5 cut(s) 56, 57, 66, 311, 369
SetI ASST 6 cut(s) 106, 203, 283, 330, 359, 373
SfuI TTCGAA 1 cut(s) 374
SmaI CCCGGG 1 cut(s) 57
Sse9I AATT 4 cut(s) 45, 285, 376, 421
SspMI CTAG 4 cut(s) 147, 162, 278, 410
StyD4I CCNGG 5 cut(s) 54, 55, 64, 309, 367
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 6 cut(s) 156, 193, 261, 336, 353, 374
TasI AATT 4 cut(s) 45, 285, 376, 421
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseI GCWGC 2 cut(s) 281, 392
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 370
TspMI CCCGGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 376
XmaI CCCGGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 4 cut(s) 147, 162, 278, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.