Prupe.6G010900_v2.0.a1

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018016
Physical Location & Seq
Reverse (-)
799060 .. 801808
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G010900.1

Sequence Viewer

Length: 1389 bp
ATGGTTTCCCGCCAGATTCAACTGCTCATTCAACGGTCAAGTTCTGCTGCTCATCTACTCCAACTCCACTCTCTCGTCCTTAAAACCGGTCTCGATCACAACCCCAACTTCGTCTCTCACTACATATATGCTGCCTGCTCAATTTCGGTCGAATTTTCCAAACTGGTCTTTGATCATATACCCATTAAGCCTCCACTCTTTGCTTGGAATTCAATTATCAGAGCCTTTACAAACAGCTCAAATCCACTTGAATCGCTCAACTTCTTCTTTCAGCTTCACAGAATTGGGCTTAAACCCGACAATTTTACGTACCCTTTTGTTTTGAAAGCATGCGGTCGATGTTCAATTGTTGGAGTAGGTGGGCCTGTGCATTCTTTGATTCTCAAGGTGGGTTTTGATTCGGACCGGTATATACGGAATACCCTTTTGAGGATGTATGCTGCTTGTGGCGCAATCAGGCTTGCAAGGCGGGTGTTTGATGAAATGACTGTTAGAGATGTGGTTTCTTGGAGCTCTATGATTGCAGGATATGTAGCATGCAATTGTCCCTTGGATGCCTTTAAGGTTTTTCAAGACATGAAACTAGCGAATGAAAACCCAAATTCAGTCACTTTGGTAAGCTTGCTTTCTGCCTGTACCCGCCTACTTAATTTTAGAGCAGGAGAGTCCATTCATTGCTACATTGTTGTCAATTGCATTGGGATAGATGTTGCTTTGGGGACAGCTCTCCTTGAGATGTATTCTAAGTGTGGGCACGTTGAGAAAGCCTTCCAAGTTTTCAATTCAATGAGTGAGAAGAATTTGCAGTCTTGGACAATTATGATCTCTGGTCTTCCCGATCATGGTCATGGAAAGGATGCTATCTCATTGTTTACCCGCATGGAACAAACTGGGCTGGTACCAGACAGCATGTCATTTTCTGCCATCTTGTCAGCTTGTAGCCATTTGGGCCTCGTACATAAAGGTCGACAATTTTTCAATCAGATGGTGAGAACGTATGGTATTCAGCCAACATTGGAACATTATGGATGCTTAGTAGATTTGCTTGGAAGAGCTGGTCTGATTGAAGAAGCTTATGAGATTATCAAAAATATGCCAATGGAGCCTAACTCTGTTATATTGAGGAGCTTCTTGTGTGCTTGTAGGAACCATGGCGTGGCTATTACTTTAGATGATAAACTCAGGAAACTCCTTATATCAGAGCCTAACCTGGGAGCAAACTATGTACTTGCTGCTAGTGTGTCTTCTCTTTCTGGTTGTTGGAATGATGCTGCTGATCTACGAGTAGCCATGAAACAGAATGGTTTGGTAAAGGTTCCCGGGTGCAGTTGGGTGGAGGTAGGTGGTGGTGGTTCTACTGCAGCTACTATAAACGAGCCTCTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

463

Amino Acids

50.81

Weight (kDa)

8.42

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018016)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44710
prunus_persica Prupe.6G010900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0081411
rosa_laevigata RLG00000036932
rosa_multiflora Rmu_sc0007768.1_g000022
rosa_roxburghii Rroxscaffold_1G00002130
rosa_rugosa Rorug05G0476200
rosa_samantha Rh5BG552100 Rh5CG574700 Rh5DG561700
rosa_wichuraiana Rw5G049070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 898
AccB1I GGYRCC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 1156
AccI GTMKAC 1 cut(s) 967
AciI CCGC 5 cut(s) 10, 333, 469, 640, 877
AcsI RAATTY 4 cut(s) 152, 208, 601, 799
AfaI GTAC 5 cut(s) 311, 637, 900, 957, 1227
AfiI CCNNNNNNNGG 4 cut(s) 429, 842, 1156, 1211
AgeI ACCGGT 2 cut(s) 86, 405
AhdI GACNNNNNGTC 1 cut(s) 910
AjnI CCWGG 1 cut(s) 1209
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 2 cut(s) 95, 118
Ama87I CYCGRG 1 cut(s) 1319
AoxI GGCC 2 cut(s) 362, 949
ApeKI GCWGC 6 cut(s) 47, 131, 440, 1232, 1271, 1361
ApoI RAATTY 4 cut(s) 152, 208, 601, 799
AsiGI ACCGGT 2 cut(s) 86, 405
Asp700I GAANNNNTTC 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 898
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 362, 403, 949
AsuC2I CCSGG 2 cut(s) 1320, 1321
AsuHPI GGTGA 1 cut(s) 1000
AvaI CYCGRG 1 cut(s) 1319
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 756
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 515
BbsI GAAGAC 2 cut(s) 824, 1236
Bbv12I GWGCWC 1 cut(s) 515
BbvI GCAGC 6 cut(s) 34, 118, 427, 1219, 1258, 1373
BccI CCATC 2 cut(s) 932, 979
BciT130I CCWGG 1 cut(s) 1211
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 2 cut(s) 1320, 1321
BcoDI GTCTC 2 cut(s) 95, 118
BfaI CTAG 3 cut(s) 584, 1236, 1382
BfmI CTRYAG 1 cut(s) 1359
BglI GCCNNNNNGGC 1 cut(s) 948
BisI GCNGC 6 cut(s) 48, 132, 441, 1233, 1272, 1362
BlsI GCNGC 6 cut(s) 49, 133, 442, 1234, 1273, 1363
Bme1390I CCNGG 3 cut(s) 1211, 1320, 1321
Bme18I GGWCC 1 cut(s) 403
BmeRI GACNNNNNGTC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 1319
BmgT120I GGNCC 3 cut(s) 362, 403, 949
BmiI GGNNCC 4 cut(s) 900, 1104, 1148, 1317
BmrFI CCNGG 3 cut(s) 1211, 1320, 1321
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 4 cut(s) 544, 847, 1019, 1258
BmuI ACTGGG 1 cut(s) 900
BpiI GAAGAC 2 cut(s) 824, 1236
BplI GAGNNNNNCTC 2 cut(s) 1094, 1126
BpuEI CTTGAG 2 cut(s) 368, 752
BpuMI CCSGG 2 cut(s) 1320, 1321
BsaAI YACGTR 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 549, 1150, 1210, 1319
BsaWI WCCGGW 2 cut(s) 86, 405
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 4 cut(s) 429, 842, 1156, 1211
Bse118I RCCGGY 2 cut(s) 86, 405
Bse1I ACTGG 2 cut(s) 168, 895
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 1211
BseDI CCNNGG 4 cut(s) 549, 1150, 1210, 1319
BseGI GGATG 4 cut(s) 438, 559, 862, 1034
BseLI CCNNNNNNNGG 4 cut(s) 429, 842, 1156, 1211
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 1195
BseNI ACTGG 2 cut(s) 168, 895
BseRI GAGGAG 1 cut(s) 1138
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 6 cut(s) 34, 118, 427, 1219, 1258, 1373
BsgI GTGCAG 1 cut(s) 1345
Bsh1285I CGRYCG 2 cut(s) 150, 337
BshFI GGCC 2 cut(s) 364, 951
BshNI GGYRCC 1 cut(s) 898
BshTI ACCGGT 2 cut(s) 86, 405
BsiEI CGRYCG 2 cut(s) 150, 337
BsiHKAI GWGCWC 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 1319
BsiSI CCGG 3 cut(s) 87, 406, 1320
BslFI GGGAC 2 cut(s) 531, 733
BslI CCNNNNNNNGG 4 cut(s) 429, 842, 1156, 1211
BsmAI GTCTC 2 cut(s) 95, 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 531, 733
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 364, 951
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 1319
Bsp1286I GDGCHC 2 cut(s) 515, 756
Bsp143I GATC 5 cut(s) 94, 172, 822, 838, 1276
Bsp19I CCATGG 1 cut(s) 1150
BspACI CCGC 5 cut(s) 10, 333, 469, 640, 877
BspANI GGCC 2 cut(s) 364, 951
BspCNI CTCAG 1 cut(s) 1194
BspLI GGNNCC 4 cut(s) 900, 1104, 1148, 1317
BspMAI CTGCAG 1 cut(s) 1363
BspQI GCTCTTC 1 cut(s) 1045
BspT107I GGYRCC 1 cut(s) 898
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 2 cut(s) 86, 405
BsrI ACTGG 2 cut(s) 168, 895
BssAI RCCGGY 2 cut(s) 86, 405
BssECI CCNNGG 4 cut(s) 549, 1150, 1210, 1319
BssMI GATC 5 cut(s) 94, 172, 822, 838, 1276
BssT1I CCWWGG 2 cut(s) 549, 1150
Bst2UI CCWGG 1 cut(s) 1211
Bst4CI ACNGT 2 cut(s) 36, 490
Bst6I CTCTTC 1 cut(s) 1045
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 136, 331, 462, 538, 623
BstDEI CTNAG 3 cut(s) 744, 1033, 1181
BstDSI CCRYGG 1 cut(s) 1150
BstF5I GGATG 4 cut(s) 438, 559, 862, 1034
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 97, 175, 825, 841, 1279
BstMAI GTCTC 2 cut(s) 95, 118
BstMBI GATC 5 cut(s) 94, 172, 822, 838, 1276
BstMCI CGRYCG 2 cut(s) 150, 337
BstMWI GCNNNNNNNGC 4 cut(s) 449, 466, 948, 1102
BstNI CCWGG 1 cut(s) 1211
BstNSI RCATGY 3 cut(s) 333, 540, 913
BstSCI CCNGG 3 cut(s) 1209, 1318, 1319
BstSFI CTRYAG 1 cut(s) 1359
BstSLI GKGCMC 1 cut(s) 756
BstSNI TACGTA 1 cut(s) 309
BstV1I GCAGC 6 cut(s) 34, 118, 427, 1219, 1258, 1373
BstV2I GAAGAC 2 cut(s) 824, 1236
BsuRI GGCC 2 cut(s) 364, 951
BtgI CCRYGG 1 cut(s) 1150
BtsCI GGATG 4 cut(s) 438, 559, 862, 1034
Cac8I GCNNGC 5 cut(s) 136, 331, 462, 538, 623
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 2 cut(s) 86, 405
Cfr13I GGNCC 3 cut(s) 362, 403, 949
Cfr9I CCCGGG 1 cut(s) 1319
CpoI CGGWCCG 1 cut(s) 403
Csp6I GTAC 5 cut(s) 310, 636, 899, 956, 1226
CspAI ACCGGT 2 cut(s) 86, 405
CspI CGGWCCG 1 cut(s) 403
CviAII CATG 9 cut(s) 330, 537, 577, 842, 848, 880, 910, 1151, 1291
CviQI GTAC 5 cut(s) 310, 636, 899, 956, 1226
DdeI CTNAG 3 cut(s) 744, 1033, 1181
DpnI GATC 5 cut(s) 96, 174, 824, 840, 1278
DpnII GATC 5 cut(s) 94, 172, 822, 838, 1276
DriI GACNNNNNGTC 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 1045
Eam1105I GACNNNNNGTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 1045
Ecl136II GAGCTC 1 cut(s) 513
Eco105I TACGTA 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 549, 1150
Eco24I GRGCYC 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 1319
EcoICRI GAGCTC 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 1209
EcoT14I CCWWGG 2 cut(s) 549, 1150
EcoT38I GRGCYC 1 cut(s) 515
ErhI CCWWGG 2 cut(s) 549, 1150
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 9 cut(s) 333, 540, 580, 845, 851, 883, 913, 1154, 1294
FaqI GGGAC 2 cut(s) 531, 733
FatI CATG 9 cut(s) 329, 536, 576, 841, 847, 879, 909, 1150, 1290
FauI CCCGC 4 cut(s) 17, 462, 647, 884
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 6 cut(s) 48, 132, 441, 1233, 1272, 1362
FokI GGATG 4 cut(s) 445, 566, 869, 1041
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 6 cut(s) 48, 132, 441, 1233, 1272, 1362
FspBI CTAG 3 cut(s) 584, 1236, 1382
GlaI GCGC 1 cut(s) 451
GluI GCNGC 6 cut(s) 48, 132, 441, 1233, 1272, 1362
HaeIII GGCC 2 cut(s) 364, 951
HapII CCGG 3 cut(s) 87, 406, 1320
HhaI GCGC 1 cut(s) 452
Hin1II CATG 9 cut(s) 333, 540, 580, 845, 851, 883, 913, 1154, 1294
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 968
HindII GTYRAC 1 cut(s) 968
HindIII AAGCTT 2 cut(s) 619, 1071
HinfI GANTC 5 cut(s) 16, 251, 379, 398, 665
HpaII CCGG 3 cut(s) 87, 406, 1320
HphI GGTGA 1 cut(s) 1000
Hpy166II GTNNAC 2 cut(s) 873, 968
Hpy188I TCNGA 5 cut(s) 221, 403, 984, 1062, 1201
Hpy188III TCNNGA 4 cut(s) 92, 572, 836, 1183
Hpy8I GTNNAC 2 cut(s) 873, 968
HpyAV CCTTC 1 cut(s) 778
HpyCH4III ACNGT 2 cut(s) 36, 490
HpyCH4IV ACGT 3 cut(s) 308, 756, 995
HpyCH4V TGCA 8 cut(s) 370, 464, 524, 540, 696, 805, 1326, 1361
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 466, 948, 1102
HpyF3I CTNAG 3 cut(s) 744, 1033, 1181
HpySE526I ACGT 3 cut(s) 308, 756, 995
Hsp92II CATG 9 cut(s) 333, 540, 580, 845, 851, 883, 913, 1154, 1294
HspAI GCGC 1 cut(s) 450
KpnI GGTACC 1 cut(s) 902
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 5 cut(s) 94, 172, 822, 838, 1276
LguI GCTCTTC 1 cut(s) 1045
LmnI GCTCC 4 cut(s) 510, 1102, 1125, 1214
Lsp1109I GCAGC 6 cut(s) 34, 118, 427, 1219, 1258, 1373
LweI GCATC 4 cut(s) 544, 847, 1019, 1258
MaeI CTAG 3 cut(s) 584, 1236, 1382
MaeII ACGT 3 cut(s) 308, 756, 995
MaeIII GTNAC 1 cut(s) 607
MalI GATC 5 cut(s) 96, 174, 824, 840, 1278
MboI GATC 5 cut(s) 94, 172, 822, 838, 1276
MboII GAAGA 6 cut(s) 256, 808, 824, 1062, 1079, 1236
MfeI CAATTG 3 cut(s) 345, 541, 691
MhlI GDGCHC 2 cut(s) 515, 756
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 3 cut(s) 85, 331, 1241
MnlI CCTC 6 cut(s) 201, 423, 962, 1116, 1330, 1389
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 5 cut(s) 81, 186, 291, 561, 648
MslI CAYNNNNRTG 1 cut(s) 846
MspI CCGG 3 cut(s) 87, 406, 1320
MspR9I CCNGG 3 cut(s) 1211, 1320, 1321
MunI CAATTG 3 cut(s) 345, 541, 691
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 1211
MwoI GCNNNNNNNGC 4 cut(s) 449, 466, 948, 1102
NciI CCSGG 2 cut(s) 1320, 1321
NcoI CCATGG 1 cut(s) 1150
NdeII GATC 5 cut(s) 94, 172, 822, 838, 1276
NlaIII CATG 9 cut(s) 333, 540, 580, 845, 851, 883, 913, 1154, 1294
NlaIV GGNNCC 4 cut(s) 900, 1104, 1148, 1317
NmuCI GTSAC 1 cut(s) 607
NspI RCATGY 3 cut(s) 333, 540, 913
PaeI GCATGC 2 cut(s) 333, 540
PciSI GCTCTTC 1 cut(s) 1045
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 4 cut(s) 16, 251, 379, 398
PflMI CCANNNNNTGG 1 cut(s) 1156
PinAI ACCGGT 2 cut(s) 86, 405
PkrI GCNGC 6 cut(s) 49, 133, 442, 1234, 1273, 1363
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
Ppu21I YACGTR 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 1209
PspGI CCWGG 1 cut(s) 1209
PspN4I GGNNCC 4 cut(s) 900, 1104, 1148, 1317
PspPI GGNCC 3 cut(s) 362, 403, 949
PstI CTGCAG 1 cut(s) 1363
RsaI GTAC 5 cut(s) 311, 637, 900, 957, 1227
RsaNI GTAC 5 cut(s) 310, 636, 899, 956, 1226
RseI CAYNNNNRTG 1 cut(s) 846
Rsr2I CGGWCCG 1 cut(s) 403
RsrII CGGWCCG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 515
SalI GTCGAC 1 cut(s) 966
SapI GCTCTTC 1 cut(s) 1045
SaqAI TTAA 5 cut(s) 81, 186, 291, 561, 648
SatI GCNGC 6 cut(s) 48, 132, 441, 1233, 1272, 1362
Sau3AI GATC 5 cut(s) 94, 172, 822, 838, 1276
Sau96I GGNCC 3 cut(s) 362, 403, 949
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 1211, 1320, 1321
SduI GDGCHC 2 cut(s) 515, 756
SfaNI GCATC 4 cut(s) 544, 847, 1019, 1258
SfcI CTRYAG 1 cut(s) 1359
SinI GGWCC 1 cut(s) 403
SmaI CCCGGG 1 cut(s) 1321
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 383, 731
SmoI CTYRAG 2 cut(s) 383, 731
SnaBI TACGTA 1 cut(s) 309
SphI GCATGC 2 cut(s) 333, 540
SsiI CCGC 5 cut(s) 10, 333, 469, 640, 877
SspMI CTAG 3 cut(s) 584, 1236, 1382
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 1209, 1318, 1319
StyI CCWWGG 2 cut(s) 549, 1150
TaaI ACNGT 2 cut(s) 36, 490
TaiI ACGT 3 cut(s) 311, 759, 998
TaqI TCGA 4 cut(s) 93, 150, 337, 967
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 1225
TfiI GAWTC 4 cut(s) 16, 251, 379, 398
Tru1I TTAA 5 cut(s) 81, 186, 291, 561, 648
Tru9I TTAA 5 cut(s) 81, 186, 291, 561, 648
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 6 cut(s) 47, 131, 440, 1232, 1271, 1361
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 495, 593, 606, 662, 1307
TspGWI ACGGA 1 cut(s) 430
TspMI CCCGGG 1 cut(s) 1319
Van91I CCANNNNNTGG 1 cut(s) 1156
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 4 cut(s) 152, 208, 601, 799
XceI RCATGY 3 cut(s) 333, 540, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmaI CCCGGG 1 cut(s) 1319
XmiI GTMKAC 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 3 cut(s) 584, 1236, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.