Prupe.6G021900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0021952
Physical Location & Seq
Forward (+)
1760614 .. 1761198
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G021900.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 294 bp
ATGCTTCGGGCGAAACCAATTCCCAGGCACATGTGTGGCCCAGCCCATAAGGGTCATGCGGACTTGACGTCATTCCCACCTTCCTCCAGTATATCACTGGTAGTCCCTCAGCCGTTTTGGCGGGGTGTACTAAACTCCCTATTGGGCTGGGCCCTTCCCCATAAGGCCCCACCATCGGGGCATAAGCGCCCTCTTGTTACCCATATGCGAGGCACCGTCTTAGCCTTCCCTGACCACGATCGCTCCTACACCCGTAGCGTTCGTGATCGGCCTACTCAACTGTGTATCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.81

Weight (kDa)

10.87

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07798 AT5G06043 ATMG01220
prunus_persica Prupe.6G021900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 2 cut(s) 59, 121
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 175, 176
AflIII ACRYGT 1 cut(s) 30
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 23
AleI CACNNNNGTG 1 cut(s) 33
AoxI GGCC 4 cut(s) 37, 150, 165, 269
ApaI GGGCCC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 38, 150, 151, 166
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 190
BglI GCCNNNNNGGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 25
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 38, 150, 151, 166
BmiI GGNNCC 3 cut(s) 152, 168, 214
BmrFI CCNGG 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 176
Bse1I ACTGG 2 cut(s) 87, 102
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 175, 176
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 87, 102
BseSI GKGCMC 1 cut(s) 154
BseYI CCCAGC 2 cut(s) 40, 147
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 39, 152, 167, 271
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 175, 176
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 4 cut(s) 39, 152, 167, 271
Bsp120I GGGCCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 238, 265
BspACI CCGC 2 cut(s) 59, 121
BspANI GGCC 4 cut(s) 39, 152, 167, 271
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 152, 168, 214
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 87, 102
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 238, 265
BssNI GRCGYC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 217, 282
BstACI GRCGYC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 108, 220
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 241, 268
BstMBI GATC 2 cut(s) 238, 265
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 154
BsuRI GGCC 4 cut(s) 39, 152, 167, 271
BtsIMutI CAGTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 4 cut(s) 38, 150, 151, 166
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 31, 56
CviJI RGCY 8 cut(s) 39, 44, 112, 147, 152, 167, 224, 271
CviKI_1 RGCY 8 cut(s) 39, 44, 112, 147, 152, 167, 224, 271
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 2 cut(s) 108, 220
DpnI GATC 2 cut(s) 240, 267
DpnII GATC 2 cut(s) 238, 265
DriI GACNNNNNGTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 154
EcoO109I RGGNCCY 2 cut(s) 151, 166
EcoRII CCWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 2 cut(s) 34, 59
FaiI YATR 8 cut(s) 32, 48, 57, 92, 162, 183, 204, 206
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 30, 55
FauI CCCGC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 154
GlaI GCGC 1 cut(s) 188
GsaI CCCAGC 2 cut(s) 44, 151
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 4 cut(s) 39, 152, 167, 271
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 2 cut(s) 34, 59
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 90, 164, 235
HpyCH4III ACNGT 2 cut(s) 217, 282
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 108, 220
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 34, 59
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 238, 265
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 10, 37, 54, 83, 100, 133, 243
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 240, 267
MboI GATC 2 cut(s) 238, 265
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 18
MnlI CCTC 4 cut(s) 94, 117, 201, 203
MslI CAYNNNNRTG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeI CATATG 1 cut(s) 204
NdeII GATC 2 cut(s) 238, 265
NlaIII CATG 2 cut(s) 34, 59
NlaIV GGNNCC 3 cut(s) 152, 168, 214
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 33
PciI ACATGT 1 cut(s) 30
Ple19I CGATCG 1 cut(s) 241
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 23
PspFI CCCAGC 2 cut(s) 40, 147
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 152, 168, 214
PspOMI GGGCCC 1 cut(s) 150
PspPI GGNCC 4 cut(s) 38, 150, 151, 166
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 33
Sau3AI GATC 2 cut(s) 238, 265
Sau96I GGNCC 4 cut(s) 38, 150, 151, 166
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 154
SetI ASST 2 cut(s) 71, 82
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 1 cut(s) 18
SsiI CCGC 2 cut(s) 59, 121
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 217, 282
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 18
TatI WGTACW 1 cut(s) 127
TscAI CASTG 1 cut(s) 102
TspRI CASTG 1 cut(s) 102
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.