Prupe.6G023500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
1889040 .. 1889234
195 bp
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UTR
Exon/CDS
Intron
Prupe.6G023500.1

Sequence Viewer

Length: 195 bp
ATGGCGCAATTTAGCAACTGCAAAGCTATGTTCTTGATGGTAATAGCCATGGTGCTTGTCTCAGTTACAGCTCAGGATACTGCGCCGGCTCCATCACCGGCATTGGACGCTGGAGCTGGAACTCTGGTGACAATTTCCAGCCTATACATATACTCTCCGGTGCTCTTCTCTCTCTTTGCGCTGCTTAGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.76

Weight (kDa)

6.5

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019803)

Species Orthologous Gene IDs
prunus_persica Prupe.6G023500_v2.0.a1
pyrus_communis pycom03g02100
rosa_chinensis RchiOBHm_Chr5g0077131
rosa_samantha Rh5AG506100 Rh5BG528100 Rh5CG552400 Rh5DG540400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 3 cut(s) 26, 71, 116
AluI AGCT 3 cut(s) 26, 71, 116
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 3 cut(s) 7, 85, 181
AsuHPI GGTGA 2 cut(s) 87, 139
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 168
BccI CCATC 2 cut(s) 31, 100
BciVI GTATCC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 64
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 2 cut(s) 72, 185
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 157
Bse118I RCCGGY 2 cut(s) 85, 97
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 75, 86
BseXI GCAGC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 86, 98, 158
BsmAI GTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 74, 85
BspLI GGNNCC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 170
BsrFI RCCGGY 2 cut(s) 85, 97
BssAI RCCGGY 2 cut(s) 85, 97
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 61, 72, 185
BstDSI CCRYGG 1 cut(s) 48
BstHHI GCGC 3 cut(s) 7, 85, 181
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 107, 187
BstV1I GCAGC 1 cut(s) 168
BsuI GTATCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 3 cut(s) 7, 85, 181
Cfr10I RCCGGY 2 cut(s) 85, 97
CseI GACGC 1 cut(s) 116
CviAII CATG 1 cut(s) 49
CviJI RGCY 6 cut(s) 26, 47, 71, 89, 116, 141
CviKI_1 RGCY 6 cut(s) 26, 47, 71, 89, 116, 141
DdeI CTNAG 3 cut(s) 61, 72, 185
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 52
FaiI YATR 5 cut(s) 29, 50, 145, 149, 151
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
GlaI GCGC 3 cut(s) 6, 84, 180
GluI GCNGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 3 cut(s) 86, 98, 158
HgaI GACGC 1 cut(s) 116
HhaI GCGC 3 cut(s) 7, 85, 181
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 3 cut(s) 5, 83, 179
HinP1I GCGC 3 cut(s) 5, 83, 179
HpaII CCGG 3 cut(s) 86, 98, 158
HphI GGTGA 2 cut(s) 87, 139
Hpy188III TCNNGA 2 cut(s) 34, 74
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 187
HpyF3I CTNAG 3 cut(s) 61, 72, 185
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 3 cut(s) 5, 83, 179
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 94, 113
LpnPI CCDG 8 cut(s) 59, 96, 99, 102, 110, 111, 151, 171
Lsp1109I GCAGC 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 64, 127
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 8, 132
MroNI GCCGGC 1 cut(s) 85
MspI CCGG 3 cut(s) 86, 98, 158
MwoI GCNNNNNNNGC 2 cut(s) 107, 187
NaeI GCCGGC 1 cut(s) 87
NcoI CCATGG 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 28, 73, 118
Sse9I AATT 2 cut(s) 8, 132
StyI CCWWGG 1 cut(s) 48
TasI AATT 2 cut(s) 8, 132
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.