pycom03g02100

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
1584552 .. 1584746
195 bp
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UTR
Exon/CDS
Intron
pycom03g02100.1

Sequence Viewer

Length: 195 bp
ATGGCGCAAGTTAGCATCTGCAAAGCTGTGTTCTTGATGATAATCGCCATTGTGCTCGTCTCAGTTACAGCTCAGGATAGCGCGCCGGCACCATCACCGGCATTGGACGCTGGAGCCGGAATTCCAGTGACCATTTCCCGCGCTTTTGTTTACTCTTCGTTGCTGCTCTCTCTCTTTGCGCTGCTGCGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.63

Weight (kDa)

7.98

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019803)

Species Orthologous Gene IDs
prunus_persica Prupe.6G023500_v2.0.a1
pyrus_communis pycom03g02100
rosa_chinensis RchiOBHm_Chr5g0077131
rosa_samantha Rh5AG506100 Rh5BG528100 Rh5CG552400 Rh5DG540400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccII CGCG 2 cut(s) 83, 141
AciI CCGC 2 cut(s) 139, 187
AcsI RAATTY 1 cut(s) 120
AluBI AGCT 2 cut(s) 26, 71
AluI AGCT 2 cut(s) 26, 71
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 163, 181, 184
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 5 cut(s) 7, 83, 85, 143, 181
AsuHPI GGTGA 1 cut(s) 87
BanI GGYRCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 150, 168, 171
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 64
BisI GCNGC 4 cut(s) 164, 182, 185, 188
BlsI GCNGC 4 cut(s) 165, 183, 186, 189
BmiI GGNNCC 2 cut(s) 90, 115
BmsI GCATC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 41
Bse118I RCCGGY 2 cut(s) 85, 97
Bse1I ACTGG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 41
BseMII CTCAG 2 cut(s) 75, 86
BseNI ACTGG 1 cut(s) 125
BsePI GCGCGC 1 cut(s) 81
BseXI GCAGC 3 cut(s) 150, 168, 171
Bsh1236I CGCG 2 cut(s) 83, 141
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 86, 98, 117
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 2 cut(s) 139, 187
BspCNI CTCAG 2 cut(s) 74, 85
BspFNI CGCG 2 cut(s) 83, 141
BspLI GGNNCC 2 cut(s) 90, 115
BspT107I GGYRCC 1 cut(s) 88
BsrFI RCCGGY 2 cut(s) 85, 97
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 2 cut(s) 85, 97
BssHII GCGCGC 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 83, 87
BstDEI CTNAG 2 cut(s) 61, 72
BstFNI CGCG 2 cut(s) 83, 141
BstHHI GCGC 5 cut(s) 7, 83, 85, 143, 181
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 107, 187
BstUI CGCG 2 cut(s) 83, 141
BstV1I GCAGC 3 cut(s) 150, 168, 171
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 83, 87
CfoI GCGC 5 cut(s) 7, 83, 85, 143, 181
Cfr10I RCCGGY 2 cut(s) 85, 97
CseI GACGC 1 cut(s) 116
CviJI RGCY 3 cut(s) 26, 71, 116
CviKI_1 RGCY 3 cut(s) 26, 71, 116
DdeI CTNAG 2 cut(s) 61, 72
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 64
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 4 cut(s) 164, 182, 185, 188
Fsp4HI GCNGC 4 cut(s) 164, 182, 185, 188
GlaI GCGC 5 cut(s) 6, 82, 84, 142, 180
GluI GCNGC 4 cut(s) 164, 182, 185, 188
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 3 cut(s) 86, 98, 117
HgaI GACGC 1 cut(s) 116
HhaI GCGC 5 cut(s) 7, 83, 85, 143, 181
Hin6I GCGC 5 cut(s) 5, 81, 83, 141, 179
HinP1I GCGC 5 cut(s) 5, 81, 83, 141, 179
HpaII CCGG 3 cut(s) 86, 98, 117
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 34, 74
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 187
HpyF3I CTNAG 2 cut(s) 61, 72
HspAI GCGC 5 cut(s) 5, 81, 83, 141, 179
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 59, 96, 99, 111, 130, 138
Lsp1109I GCAGC 3 cut(s) 150, 168, 171
LweI GCATC 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 64, 127
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 85
MspI CCGG 3 cut(s) 86, 98, 117
MvnI CGCG 2 cut(s) 83, 141
MwoI GCNNNNNNNGC 2 cut(s) 107, 187
NaeI GCCGGC 1 cut(s) 87
NgoMIV GCCGGC 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 90, 115
NmuCI GTSAC 1 cut(s) 127
PauI GCGCGC 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 87
PkrI GCNGC 4 cut(s) 165, 183, 186, 189
PspN4I GGNNCC 2 cut(s) 90, 115
PteI GCGCGC 1 cut(s) 81
SatI GCNGC 4 cut(s) 164, 182, 185, 188
SduI GDGCHC 1 cut(s) 57
SetI ASST 2 cut(s) 28, 73
SfaNI GCATC 1 cut(s) 24
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 139, 187
TasI AATT 1 cut(s) 120
TauI GCSGC 1 cut(s) 190
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 163, 181, 184
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 132
XapI RAATTY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.