Rh5BG528100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
83192353 .. 83192547
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG528100.1

Sequence Viewer

Length: 195 bp
ATGGCTCGCATTAGCATCTGCAAGGCTCTGTTCCTGATGGTGTTGGCCGCGGTGCTCGTCTCAGTCACAGCACAGGATGCTGCACTTGCTCCGGCACCTTCGCCGGACGCTGGAGCTGGAGTTCCGGTGACATTTTCAGGCGCGTTTGTTTGCTCCTCGCTGTTCTTCTCTCTACTTGCTCTGCTTTGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

6.53

Weight (kDa)

5.71

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019803)

Species Orthologous Gene IDs
prunus_persica Prupe.6G023500_v2.0.a1
pyrus_communis pycom03g02100
rosa_chinensis RchiOBHm_Chr5g0077131
rosa_samantha Rh5AG506100 Rh5BG528100 Rh5CG552400 Rh5DG540400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 2 cut(s) 50, 143
AciI CCGC 2 cut(s) 48, 50
AcoI YGGCCR 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 110
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 64
BisI GCNGC 2 cut(s) 48, 81
BlsI GCNGC 2 cut(s) 49, 82
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 24, 67
BpmI CTGGAG 2 cut(s) 132, 138
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 4 cut(s) 105, 111, 135, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 50, 143
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 92, 104, 125
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 2 cut(s) 48, 50
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 2 cut(s) 50, 143
BspLI GGNNCC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 2 cut(s) 50, 143
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstUI CGCG 2 cut(s) 50, 143
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 51
CseI GACGC 1 cut(s) 116
CviJI RGCY 4 cut(s) 5, 26, 47, 116
CviKI_1 RGCY 4 cut(s) 5, 26, 47, 116
DdeI CTNAG 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 48, 81
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 48, 81
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 48, 81
GsuI CTGGAG 2 cut(s) 132, 138
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 92, 104, 125
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 3 cut(s) 92, 104, 125
HphI GGTGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 21, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpyF3I CTNAG 1 cut(s) 61
HspAI GCGC 1 cut(s) 141
KspI CCGCGG 1 cut(s) 51
LmnI GCTCC 3 cut(s) 94, 113, 158
LpnPI CCDG 8 cut(s) 47, 59, 96, 102, 105, 117, 123, 138
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 24, 67
MaeIII GTNAC 2 cut(s) 64, 127
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 57
MnlI CCTC 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 3 cut(s) 92, 104, 125
MvnI CGCG 2 cut(s) 50, 143
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 64, 127
PkrI GCNGC 2 cut(s) 49, 82
PspN4I GGNNCC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 51
SatI GCNGC 2 cut(s) 48, 81
SduI GDGCHC 1 cut(s) 57
SetI ASST 2 cut(s) 100, 118
SfaNI GCATC 2 cut(s) 24, 67
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SsiI CCGC 2 cut(s) 48, 50
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 2 cut(s) 64, 127
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 64, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.