Prupe.6G136800_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022454
Physical Location & Seq
Reverse (-)
11031211 .. 11032398
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G136800.1

Sequence Viewer

Length: 1065 bp
ATGGCTTCTTCTTCATCTTCTATGCTGCTCTTTCTCTCTCTACTTCTCCTTGTACCGTATATTACTTCTTCCAATATTATCATCTTACCCATCTCACATTTACCCCAAAACCCACATCCCGATCCTTACCAGCACCTCAGCTACTTAGCAAATTCCTCTTTGAAAAGAGCCCACCACCTCAAAAATCCCCAAACTACCCCTCCTCATACCAACGCCAAAATCCCACTTTTCTCCCATAGCTATGGAAGCTACTCCTCCATTCCCCTGAGCTTTGGCACCCCTCCCCAAACCCTCCCCTTCATCATGGACACTGGTAGTGATTTAACTTGGTTCCCTTGCGGCAAAAACTACCAGTGTATCCATTGCTCCATTTACCTCAACAACACCGCCAAAGTCAAATCTTTTATTCCCAAATTGTCCTCATCTTCCAAAACCCTCGCCTGCTTGAACCCCAAATGCGCTAGGATTTACCCGAAAATTCACTGCCCAGATTGCAAACTAGGATCGAAAAACTGTACCTGGAGATGCCCTTGGTACACATACCCCTACGGCTCTGGCAACCCAAGTGGAAGTCTACTATCTGAAATGCAGCACCTCTCGAACTGCCGCTGGCATTACCGGGACGCCGTCAAGAAAACTAAAGGCGTCAGCTACACGCCGTTTGTGAAAAACCCAGAAGTCCCTGGAAGGGGGCATTTCCTCACCTCTTACTACGTTGGCCTCCGCTGCATCACTGTGGGAGGGCGGAGCGTGAAGATTTCATACAGGTACCTAAGGCCTGACAAGAACAGCTCCGGCAGGACCATAGTCGATTCTGGGACCACCTTCACGTATATGGCACCTGAGGTGTTCGAGCGCATGGCGGGAGAGTTCGAGAAGTTGACGAAGGGCTATAAGAGGGAGGAGGAAGTGGAGGCTTTGACTAGGTTAAGGCCGTTCTATAATGTTTCCAGGATCGAAACGCCGAAGTTTCCAAGCGTGATGTTTCGCTTCAATGGAGGGCTGAGATGGCGCTGCCGGAGGAGAATTACTTGGTGCCAGCCGGTTGGAAGGTGTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

355

Amino Acids

40.19

Weight (kDa)

9.68

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022454)

Species Orthologous Gene IDs
prunus_persica Prupe.6G136800_v2.0.a1 Prupe.6G140800_v2.0.a1 Prupe.8G051600_v2.0.a1
pyrus_communis pycom03g10710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 768
AccB1I GGYRCC 4 cut(s) 275, 768, 838, 1035
AccI GTMKAC 1 cut(s) 574
AciI CCGC 6 cut(s) 339, 387, 607, 724, 745, 863
AclWI GGATC 3 cut(s) 116, 511, 962
AcsI RAATTY 2 cut(s) 151, 477
AcyI GRCGYC 2 cut(s) 624, 645
AfaI GTAC 4 cut(s) 54, 517, 536, 770
AfiI CCNNNNNNNGG 2 cut(s) 688, 689
AgsI TTSAA 3 cut(s) 163, 448, 994
AjnI CCWGG 3 cut(s) 518, 682, 950
AluBI AGCT 6 cut(s) 141, 240, 249, 270, 651, 792
AluI AGCT 6 cut(s) 141, 240, 249, 270, 651, 792
AlwI GGATC 3 cut(s) 116, 511, 962
AoxI GGCC 3 cut(s) 718, 776, 932
ApeKI GCWGC 4 cut(s) 25, 589, 726, 1014
ApoI RAATTY 2 cut(s) 151, 477
Asp718I GGTACC 1 cut(s) 768
AspLEI GCGC 3 cut(s) 461, 858, 1014
AspS9I GGNCC 2 cut(s) 801, 819
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 1 cut(s) 694
AvaII GGWCC 2 cut(s) 801, 819
AxyI CCTNAGG 2 cut(s) 773, 843
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BanI GGYRCC 4 cut(s) 275, 768, 838, 1035
BanII GRGCYC 1 cut(s) 172
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 12, 601, 713, 1001
BccI CCATC 2 cut(s) 98, 1002
BceAI ACGGC 4 cut(s) 565, 611, 643, 919
BciT130I CCWGG 3 cut(s) 520, 684, 952
BciVI GTATCC 1 cut(s) 368
BcnI CCSGG 1 cut(s) 620
BfaI CTAG 3 cut(s) 462, 500, 924
BfoI RGCGCY 1 cut(s) 1015
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 6 cut(s) 26, 340, 590, 607, 727, 1015
BlsI GCNGC 6 cut(s) 27, 341, 591, 608, 728, 1016
Bme1390I CCNGG 4 cut(s) 520, 620, 684, 952
Bme18I GGWCC 2 cut(s) 801, 819
BmgT120I GGNCC 2 cut(s) 801, 819
BmiI GGNNCC 6 cut(s) 277, 332, 770, 820, 840, 1037
BmrFI CCNGG 4 cut(s) 520, 620, 684, 952
BmsI GCATC 2 cut(s) 515, 738
BoxI GACNNNNGTC 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 541
Bpu10I CCTNAGC 2 cut(s) 137, 266
BpuMI CCSGG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 831
BsaHI GRCGYC 2 cut(s) 624, 645
BsaJI CCNNGG 2 cut(s) 530, 682
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 689
Bse118I RCCGGY 1 cut(s) 1042
Bse1I ACTGG 2 cut(s) 316, 352
Bse21I CCTNAGG 2 cut(s) 773, 843
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 3 cut(s) 520, 684, 952
BseDI CCNNGG 2 cut(s) 530, 682
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 688, 689
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 4 cut(s) 151, 257, 834, 995
BseNI ACTGG 2 cut(s) 316, 352
BseRI GAGGAG 4 cut(s) 192, 244, 917, 1036
BseXI GCAGC 4 cut(s) 12, 601, 713, 1001
BshFI GGCC 3 cut(s) 720, 778, 934
BshNI GGYRCC 4 cut(s) 275, 768, 838, 1035
BsiSI CCGG 4 cut(s) 619, 795, 1018, 1043
BslFI GGGAC 3 cut(s) 635, 665, 832
BslI CCNNNNNNNGG 2 cut(s) 688, 689
BsmFI GGGAC 3 cut(s) 635, 665, 832
BsnI GGCC 3 cut(s) 720, 778, 934
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 121, 503, 954
BspACI CCGC 6 cut(s) 339, 387, 607, 724, 745, 863
BspANI GGCC 3 cut(s) 720, 778, 934
BspCNI CTCAG 4 cut(s) 150, 258, 835, 996
BspLI GGNNCC 6 cut(s) 277, 332, 770, 820, 840, 1037
BspPI GGATC 3 cut(s) 116, 511, 962
BspT107I GGYRCC 4 cut(s) 275, 768, 838, 1035
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 1042
BsrI ACTGG 2 cut(s) 316, 352
BssAI RCCGGY 1 cut(s) 1042
BssECI CCNNGG 2 cut(s) 530, 682
BssMI GATC 3 cut(s) 121, 503, 954
BssNI GRCGYC 2 cut(s) 624, 645
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 3 cut(s) 520, 684, 952
Bst4CI ACNGT 3 cut(s) 57, 515, 736
BstACI GRCGYC 2 cut(s) 624, 645
BstBAI YACGTR 1 cut(s) 831
BstC8I GCNNGC 3 cut(s) 442, 611, 1040
BstDEI CTNAG 6 cut(s) 137, 145, 266, 773, 843, 1004
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 3 cut(s) 461, 858, 1014
BstKTI GATC 3 cut(s) 124, 506, 957
BstMBI GATC 3 cut(s) 121, 503, 954
BstMWI GCNNNNNNNGC 4 cut(s) 246, 492, 726, 1009
BstNI CCWGG 3 cut(s) 520, 684, 952
BstPAI GACNNNNGTC 1 cut(s) 806
BstSCI CCNGG 4 cut(s) 518, 618, 682, 950
BstV1I GCAGC 4 cut(s) 12, 601, 713, 1001
BstXI CCANNNNNNTGG 2 cut(s) 242, 1046
Bsu36I CCTNAGG 2 cut(s) 773, 843
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 3 cut(s) 720, 778, 934
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 4 cut(s) 309, 359, 481, 732
Cac8I GCNNGC 3 cut(s) 442, 611, 1040
CfoI GCGC 3 cut(s) 461, 858, 1014
Cfr10I RCCGGY 1 cut(s) 1042
Cfr13I GGNCC 2 cut(s) 801, 819
CseI GACGC 2 cut(s) 632, 634
Csp6I GTAC 4 cut(s) 53, 516, 535, 769
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 2 cut(s) 304, 859
CviQI GTAC 4 cut(s) 53, 516, 535, 769
DdeI CTNAG 6 cut(s) 137, 145, 266, 773, 843, 1004
DpnI GATC 3 cut(s) 123, 505, 956
DpnII GATC 3 cut(s) 121, 503, 954
EciI GGCGGA 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 801, 819
Eco81I CCTNAGG 2 cut(s) 773, 843
EcoRII CCWGG 3 cut(s) 518, 682, 950
EcoT14I CCWWGG 1 cut(s) 530
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 2 cut(s) 307, 862
FaqI GGGAC 3 cut(s) 635, 665, 832
FatI CATG 2 cut(s) 303, 858
FauI CCCGC 1 cut(s) 856
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 6 cut(s) 26, 340, 590, 607, 727, 1015
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 6 cut(s) 26, 340, 590, 607, 727, 1015
FspBI CTAG 3 cut(s) 462, 500, 924
GlaI GCGC 3 cut(s) 460, 857, 1013
GluI GCNGC 6 cut(s) 26, 340, 590, 607, 727, 1015
GsuI CTGGAG 1 cut(s) 541
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 3 cut(s) 720, 778, 934
HapII CCGG 4 cut(s) 619, 795, 1018, 1043
HgaI GACGC 2 cut(s) 632, 634
HhaI GCGC 3 cut(s) 461, 858, 1014
Hin1I GRCGYC 2 cut(s) 624, 645
Hin1II CATG 2 cut(s) 307, 862
Hin6I GCGC 3 cut(s) 459, 856, 1012
HinP1I GCGC 3 cut(s) 459, 856, 1012
HincII GTYRAC 1 cut(s) 882
HindII GTYRAC 1 cut(s) 882
HinfI GANTC 1 cut(s) 812
HpaII CCGG 4 cut(s) 619, 795, 1018, 1043
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 3 cut(s) 537, 575, 882
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 4 cut(s) 119, 598, 631, 874
Hpy8I GTNNAC 3 cut(s) 537, 575, 882
HpyAV CCTTC 5 cut(s) 307, 681, 835, 880, 1044
HpyCH4III ACNGT 3 cut(s) 57, 515, 736
HpyCH4IV ACGT 2 cut(s) 714, 830
HpyCH4V TGCA 3 cut(s) 495, 589, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 492, 726, 1009
HpyF3I CTNAG 6 cut(s) 137, 145, 266, 773, 843, 1004
HpySE526I ACGT 2 cut(s) 714, 830
Hsp92I GRCGYC 2 cut(s) 624, 645
Hsp92II CATG 2 cut(s) 307, 862
HspAI GCGC 3 cut(s) 459, 856, 1012
KpnI GGTACC 1 cut(s) 772
Kzo9I GATC 3 cut(s) 121, 503, 954
LmnI GCTCC 3 cut(s) 371, 747, 797
Lsp1109I GCAGC 4 cut(s) 12, 601, 713, 1001
LweI GCATC 2 cut(s) 515, 738
MaeI CTAG 3 cut(s) 462, 500, 924
MaeII ACGT 2 cut(s) 714, 830
MalI GATC 3 cut(s) 123, 505, 956
MboI GATC 3 cut(s) 121, 503, 954
MboII GAAGA 5 cut(s) 3, 9, 60, 417, 766
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 4 cut(s) 151, 413, 477, 1026
MmeI TCCRAC 1 cut(s) 1027
MseI TTAA 2 cut(s) 323, 929
MslI CAYNNNNRTG 3 cut(s) 240, 734, 833
MspA1I CMGCKG 2 cut(s) 609, 726
MspI CCGG 4 cut(s) 619, 795, 1018, 1043
MspR9I CCNGG 4 cut(s) 520, 620, 684, 952
MvaI CCWGG 3 cut(s) 520, 684, 952
MwoI GCNNNNNNNGC 4 cut(s) 246, 492, 726, 1009
NciI CCSGG 1 cut(s) 620
NdeII GATC 3 cut(s) 121, 503, 954
NlaIII CATG 2 cut(s) 307, 862
NlaIV GGNNCC 6 cut(s) 277, 332, 770, 820, 840, 1037
PceI AGGCCT 1 cut(s) 778
PfeI GAWTC 1 cut(s) 812
PflFI GACNNNGTC 1 cut(s) 626
PfoI TCCNGGA 1 cut(s) 950
PkrI GCNGC 6 cut(s) 27, 341, 591, 608, 728, 1016
Ppu21I YACGTR 1 cut(s) 831
PshAI GACNNNNGTC 1 cut(s) 806
Psp6I CCWGG 3 cut(s) 518, 682, 950
PspGI CCWGG 3 cut(s) 518, 682, 950
PspN4I GGNNCC 6 cut(s) 277, 332, 770, 820, 840, 1037
PspPI GGNCC 2 cut(s) 801, 819
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 4 cut(s) 54, 517, 536, 770
RsaNI GTAC 4 cut(s) 53, 516, 535, 769
RseI CAYNNNNRTG 3 cut(s) 240, 734, 833
SaqAI TTAA 2 cut(s) 323, 929
SatI GCNGC 6 cut(s) 26, 340, 590, 607, 727, 1015
Sau3AI GATC 3 cut(s) 121, 503, 954
Sau96I GGNCC 2 cut(s) 801, 819
ScrFI CCNGG 4 cut(s) 520, 620, 684, 952
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 2 cut(s) 515, 738
SinI GGWCC 2 cut(s) 801, 819
SmiMI CAYNNNNRTG 3 cut(s) 240, 734, 833
Sse9I AATT 4 cut(s) 151, 413, 477, 1026
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 6 cut(s) 339, 387, 607, 724, 745, 863
SspI AATATT 1 cut(s) 76
SspMI CTAG 3 cut(s) 462, 500, 924
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 4 cut(s) 518, 618, 682, 950
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 3 cut(s) 57, 515, 736
TaiI ACGT 2 cut(s) 717, 833
TaqI TCGA 6 cut(s) 506, 599, 810, 852, 873, 957
TasI AATT 4 cut(s) 151, 413, 477, 1026
TauI GCSGC 2 cut(s) 342, 609
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 2 cut(s) 323, 929
Tru9I TTAA 2 cut(s) 323, 929
TscAI CASTG 4 cut(s) 316, 359, 488, 739
TseI GCWGC 4 cut(s) 25, 589, 726, 1014
TspDTI ATGAA 2 cut(s) 289, 750
TspRI CASTG 4 cut(s) 316, 359, 488, 739
Tth111I GACNNNGTC 1 cut(s) 626
VpaK11BI GGWCC 2 cut(s) 801, 819
XapI RAATTY 2 cut(s) 151, 477
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 3 cut(s) 462, 500, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.