Prupe.6G140800_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022454
Physical Location & Seq
Forward (+)
11409252 .. 11410803
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G140800.1

Sequence Viewer

Length: 1392 bp
ATGGCTTCTTCTTCATCATCTTCTTCATCTTCTTTGCTGCTCTTTCTCTCTCTACTTCTCCTTCTACCGTATATTACTTCTTCCAATATTATCACCATATCCATCTCACATTTACCCACAAACCCACATCCATATCCTTACCAGCACCTCAGCTACTTAGCAAATTCCTCTTTAAAAAGAGCCCGCCACCTCAAAAATCCCCAAACTACCCCTCCTCATACCAACACCAAAATCCCACTCTTCTCCCAGAGCTATGGCGAATACTCCATACCCTTGAGCTTTGGCACCCCTCCCCAAACCCTCCCCTTTATCATGGACACTGGCAGTGATTTAATTTGGTTCCCTTGCAGCAAAAAATACCAGTGCATCAATTGCTCCACTTACCACAGCAACACCGTCAAAATCAAATCTTTTATTCCCAACTTGTCCTCATCTTCCAAACCCCTCGCCTGCTTGAACCCCAAATGCGCTATGGTTTACCCGAAAATTCACTGCCCAGATTGCAAACTCGGTTCGAAAAACTGTACCCGGAGATGCCCTTGGTACACATACCCCTACGGCTCTGGCGACACAAGTGGAAGTCTACTCTCTGAAACGCTGCACCTCCCGAACCGACGCGTACCCGATTTCCTTGTGGGCTGCTCCATTCGCGCTACCTACCAACCCGCCGCTGGCATTGCAGGGTTGGGCCGCGGCCCAGCTTCTCTGCCCGCCCAATTGGCCATAAAAAAATTCTCCTATTGCCTTCTCTCTCGCCTCTTCGACGACACTAACAAAAGCAGCTCACTGGTCCTCGTCGGTGGCAAAGACTCCGTCAAGAAAACTAAAGGCGTCAGCTACACGCCGTTTGTGAAAAACCCAGAAGTCCCTGGAAAGAGGGCTTTCCTCAACTATTACTACTACGTCGGCCTCCGCCGCATCACTGTGGGAGGGCGGCGCGTGAAAATTCCGTACAGATACCTAAGGCTTGACAAGAACGGCTCCGGCGGGACCATTGTCGATTCTGGGACCACCCTCACGCATATGGCGCCTGAAGTGTTAGAGCGTGTGGCGGGAGAGTTTGAGAAGCTGACGAAGGGCTACAAGAGGGCGGAGGAAGTGGAGGCTTTGACTAGGTTGAGGCCGTGCTATAATGTTTCCGGGATTGAAACGCCGATGTTTCCAAGCCTGACGTTTCACTTCAAGGGAGGGGCTGAGATGGCGCTGCCGGAGGAGAATTACATGGCGCCGGCCGCTTGGGAGGTGCTGTGCTTGGCGATTCGGAGTGATAATTTGCCTGTGATCTCGTCTGGGCCTTCTATAATTCTGGGGAGTTTCCAAATGCAGAATTATCATGTGGAGTTTGATTTGCAGAATGAGAGGTTTGGGTTCAAGCAACAGCAATGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

464

Amino Acids

51.33

Weight (kDa)

9.37

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022454)

Species Orthologous Gene IDs
prunus_persica Prupe.6G136800_v2.0.a1 Prupe.6G140800_v2.0.a1 Prupe.8G051600_v2.0.a1
pyrus_communis pycom03g10710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 284, 1027, 1225
AccI GTMKAC 1 cut(s) 583
AccII CGCG 4 cut(s) 618, 651, 693, 939
AcoI YGGCCR 2 cut(s) 720, 1230
AcsI RAATTY 4 cut(s) 163, 486, 731, 945
AcuI CTGAAG 1 cut(s) 1053
AcyI GRCGYC 3 cut(s) 831, 1028, 1226
AfaI GTAC 4 cut(s) 526, 545, 621, 953
AfiI CCNNNNNNNGG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 4 cut(s) 457, 1148, 1183, 1372
AjnI CCWGG 1 cut(s) 868
AluBI AGCT 7 cut(s) 153, 252, 279, 701, 783, 837, 1069
AluI AGCT 7 cut(s) 153, 252, 279, 701, 783, 837, 1069
AoxI GGCC 7 cut(s) 688, 694, 720, 907, 1121, 1230, 1292
ApeKI GCWGC 6 cut(s) 37, 348, 598, 639, 780, 1204
ApoI RAATTY 4 cut(s) 163, 486, 731, 945
ArsI GACNNNNNNTTYG 2 cut(s) 798, 830
AspLEI GCGC 6 cut(s) 470, 653, 939, 1030, 1204, 1228
AspS9I GGNCC 6 cut(s) 688, 695, 790, 990, 1008, 1292
AsuC2I CCSGG 2 cut(s) 529, 1141
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 3 cut(s) 790, 990, 1008
AxyI CCTNAGG 1 cut(s) 962
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 3 cut(s) 284, 1027, 1225
BanII GRGCYC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 6 cut(s) 24, 360, 585, 626, 792, 1191
BccI CCATC 2 cut(s) 110, 1192
BceAI ACGGC 4 cut(s) 574, 829, 994, 1108
BciT130I CCWGG 1 cut(s) 870
BcnI CCSGG 2 cut(s) 529, 1141
BfaI CTAG 1 cut(s) 1113
BfoI RGCGCY 3 cut(s) 1031, 1205, 1229
BglI GCCNNNNNGGC 1 cut(s) 719
Bme1390I CCNGG 3 cut(s) 529, 870, 1141
Bme18I GGWCC 3 cut(s) 790, 990, 1008
BmgT120I GGNCC 6 cut(s) 688, 695, 790, 990, 1008, 1292
BmiI GGNNCC 7 cut(s) 286, 341, 982, 991, 1009, 1029, 1227
BmrFI CCNGG 3 cut(s) 529, 870, 1141
BmsI GCATC 3 cut(s) 375, 524, 927
BoxI GACNNNNGTC 1 cut(s) 995
Bpu10I CCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 529, 1141
BsaHI GRCGYC 3 cut(s) 831, 1028, 1226
BsaJI CCNNGG 3 cut(s) 539, 691, 868
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 1232, 1262
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse118I RCCGGY 1 cut(s) 1228
Bse1I ACTGG 3 cut(s) 325, 361, 792
Bse21I CCTNAGG 1 cut(s) 962
Bse3DI GCAATG 2 cut(s) 675, 1388
BseBI CCWGG 1 cut(s) 870
BseDI CCNNGG 3 cut(s) 539, 691, 868
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 2 cut(s) 675, 1388
BseMII CTCAG 2 cut(s) 163, 1185
BseNI ACTGG 3 cut(s) 325, 361, 792
BseRI GAGGAG 2 cut(s) 204, 1226
BseX3I CGGCCG 1 cut(s) 1230
BseXI GCAGC 6 cut(s) 24, 360, 585, 626, 792, 1191
BseYI CCCAGC 1 cut(s) 697
BsgI GTGCAG 1 cut(s) 584
Bsh1236I CGCG 4 cut(s) 618, 651, 693, 939
Bsh1285I CGRYCG 1 cut(s) 1233
BshFI GGCC 7 cut(s) 690, 696, 722, 909, 1123, 1232, 1294
BshNI GGYRCC 3 cut(s) 284, 1027, 1225
BsiEI CGRYCG 1 cut(s) 1233
BsiSI CCGG 5 cut(s) 529, 984, 1140, 1208, 1229
BslFI GGGAC 3 cut(s) 851, 1003, 1021
BslI CCNNNNNNNGG 1 cut(s) 671
BsmFI GGGAC 3 cut(s) 851, 1003, 1021
BsnI GGCC 7 cut(s) 690, 696, 722, 909, 1123, 1232, 1294
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 1281
BspANI GGCC 7 cut(s) 690, 696, 722, 909, 1123, 1232, 1294
BspCNI CTCAG 2 cut(s) 162, 1186
BspFNI CGCG 4 cut(s) 618, 651, 693, 939
BspLI GGNNCC 7 cut(s) 286, 341, 982, 991, 1009, 1029, 1227
BspT104I TTCGAA 1 cut(s) 515
BspT107I GGYRCC 3 cut(s) 284, 1027, 1225
BsrDI GCAATG 2 cut(s) 675, 1388
BsrFI RCCGGY 1 cut(s) 1228
BsrI ACTGG 3 cut(s) 325, 361, 792
BssAI RCCGGY 1 cut(s) 1228
BssECI CCNNGG 3 cut(s) 539, 691, 868
BssMI GATC 1 cut(s) 1281
BssNI GRCGYC 3 cut(s) 831, 1028, 1226
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 4 cut(s) 69, 397, 524, 925
Bst6I CTCTTC 2 cut(s) 245, 764
BstACI GRCGYC 3 cut(s) 831, 1028, 1226
BstAPI GCANNNNNTGC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 184, 451, 673, 711, 1230
BstDEI CTNAG 4 cut(s) 149, 157, 962, 1194
BstDSI CCRYGG 1 cut(s) 691
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 4 cut(s) 618, 651, 693, 939
BstH2I RGCGCY 3 cut(s) 1031, 1205, 1229
BstHHI GCGC 6 cut(s) 470, 653, 939, 1030, 1204, 1228
BstKTI GATC 1 cut(s) 1284
BstMBI GATC 1 cut(s) 1281
BstMCI CGRYCG 1 cut(s) 1233
BstMWI GCNNNNNNNGC 9 cut(s) 372, 501, 648, 677, 719, 915, 1027, 1199, 1232
BstNI CCWGG 1 cut(s) 870
BstPAI GACNNNNGTC 1 cut(s) 995
BstSCI CCNGG 3 cut(s) 527, 868, 1139
BstUI CGCG 4 cut(s) 618, 651, 693, 939
BstV1I GCAGC 6 cut(s) 24, 360, 585, 626, 792, 1191
BstXI CCANNNNNNTGG 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 1230
Bsu36I CCTNAGG 1 cut(s) 962
BsuRI GGCC 7 cut(s) 690, 696, 722, 909, 1123, 1232, 1294
BtgI CCRYGG 1 cut(s) 691
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 331, 490
BtsIMutI CAGTG 6 cut(s) 318, 331, 368, 490, 785, 921
Cac8I GCNNGC 5 cut(s) 184, 451, 673, 711, 1230
CfoI GCGC 6 cut(s) 470, 653, 939, 1030, 1204, 1228
Cfr10I RCCGGY 1 cut(s) 1228
Cfr13I GGNCC 6 cut(s) 688, 695, 790, 990, 1008, 1292
Cfr42I CCGCGG 1 cut(s) 694
CseI GACGC 2 cut(s) 624, 820
Csp6I GTAC 4 cut(s) 525, 544, 620, 952
CviAII CATG 3 cut(s) 313, 1222, 1334
CviQI GTAC 4 cut(s) 525, 544, 620, 952
DdeI CTNAG 4 cut(s) 149, 157, 962, 1194
DinI GGCGCC 2 cut(s) 1029, 1227
DpnI GATC 1 cut(s) 1283
DpnII GATC 1 cut(s) 1281
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 2 cut(s) 720, 1230
EagI CGGCCG 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 245, 764
EarI CTCTTC 2 cut(s) 245, 764
EciI GGCGGA 2 cut(s) 902, 1106
EclXI CGGCCG 1 cut(s) 1230
Eco130I CCWWGG 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 3 cut(s) 790, 990, 1008
Eco52I CGGCCG 1 cut(s) 1230
Eco57I CTGAAG 1 cut(s) 1053
Eco81I CCTNAGG 1 cut(s) 962
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 539
EcoT38I GRGCYC 1 cut(s) 184
EgeI GGCGCC 2 cut(s) 1029, 1227
EheI GGCGCC 2 cut(s) 1029, 1227
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 3 cut(s) 316, 1225, 1337
FaqI GGGAC 3 cut(s) 851, 1003, 1021
FatI CATG 3 cut(s) 312, 1221, 1333
FauI CCCGC 5 cut(s) 191, 673, 718, 980, 1045
FauNDI CATATG 1 cut(s) 1023
FblI GTMKAC 1 cut(s) 583
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 184
FspBI CTAG 1 cut(s) 1113
GlaI GCGC 6 cut(s) 469, 652, 938, 1029, 1203, 1227
GsaI CCCAGC 1 cut(s) 701
HaeII RGCGCY 3 cut(s) 1031, 1205, 1229
HaeIII GGCC 7 cut(s) 690, 696, 722, 909, 1123, 1232, 1294
HapII CCGG 5 cut(s) 529, 984, 1140, 1208, 1229
HgaI GACGC 2 cut(s) 624, 820
HhaI GCGC 6 cut(s) 470, 653, 939, 1030, 1204, 1228
Hin1I GRCGYC 3 cut(s) 831, 1028, 1226
Hin1II CATG 3 cut(s) 316, 1225, 1337
Hin6I GCGC 6 cut(s) 468, 651, 937, 1028, 1202, 1226
HinP1I GCGC 6 cut(s) 468, 651, 937, 1028, 1202, 1226
HinfI GANTC 3 cut(s) 809, 1001, 1258
HpaII CCGG 5 cut(s) 529, 984, 1140, 1208, 1229
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 478, 546, 584
Hpy188I TCNGA 2 cut(s) 592, 1263
Hpy188III TCNNGA 2 cut(s) 607, 817
Hpy8I GTNNAC 3 cut(s) 478, 546, 584
Hpy99I CGWCG 4 cut(s) 618, 767, 800, 908
HpyAV CCTTC 4 cut(s) 71, 755, 1069, 1305
HpyCH4III ACNGT 4 cut(s) 69, 397, 524, 925
HpyCH4IV ACGT 2 cut(s) 903, 1172
HpyCH4V TGCA 8 cut(s) 348, 366, 504, 601, 680, 1324, 1351, 1386
HpyF10VI GCNNNNNNNGC 9 cut(s) 372, 501, 648, 677, 719, 915, 1027, 1199, 1232
HpyF3I CTNAG 4 cut(s) 149, 157, 962, 1194
HpySE526I ACGT 2 cut(s) 903, 1172
Hsp92I GRCGYC 3 cut(s) 831, 1028, 1226
Hsp92II CATG 3 cut(s) 316, 1225, 1337
HspAI GCGC 6 cut(s) 468, 651, 937, 1028, 1202, 1226
KasI GGCGCC 2 cut(s) 1027, 1225
KroI GCCGGC 1 cut(s) 1228
KroNI GCCGGC 1 cut(s) 1230
KspI CCGCGG 1 cut(s) 694
Kzo9I GATC 1 cut(s) 1281
LmnI GCTCC 3 cut(s) 380, 647, 986
Lsp1109I GCAGC 6 cut(s) 24, 360, 585, 626, 792, 1191
LweI GCATC 3 cut(s) 375, 524, 927
MaeI CTAG 1 cut(s) 1113
MaeII ACGT 2 cut(s) 903, 1172
MalI GATC 1 cut(s) 1283
MboI GATC 1 cut(s) 1281
MboII GAAGA 8 cut(s) 3, 12, 15, 21, 72, 232, 426, 751
MfeI CAATTG 2 cut(s) 370, 716
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 722
MluI ACGCGT 1 cut(s) 616
MluNI TGGCCA 1 cut(s) 722
Mly113I GGCGCC 2 cut(s) 1028, 1226
MlyI GAGTC 1 cut(s) 803
Mox20I TGGCCA 1 cut(s) 722
MroNI GCCGGC 1 cut(s) 1228
MscI TGGCCA 1 cut(s) 722
MseI TTAA 2 cut(s) 173, 332
MslI CAYNNNNRTG 2 cut(s) 923, 1022
Msp20I TGGCCA 1 cut(s) 722
MspA1I CMGCKG 2 cut(s) 671, 693
MspI CCGG 5 cut(s) 529, 984, 1140, 1208, 1229
MspR9I CCNGG 3 cut(s) 529, 870, 1141
MunI CAATTG 2 cut(s) 370, 716
MvaI CCWGG 1 cut(s) 870
MvnI CGCG 4 cut(s) 618, 651, 693, 939
MwoI GCNNNNNNNGC 9 cut(s) 372, 501, 648, 677, 719, 915, 1027, 1199, 1232
NaeI GCCGGC 1 cut(s) 1230
NarI GGCGCC 2 cut(s) 1028, 1226
NciI CCSGG 2 cut(s) 529, 1141
NdeI CATATG 1 cut(s) 1023
NdeII GATC 1 cut(s) 1281
NgoMIV GCCGGC 1 cut(s) 1228
NlaIII CATG 3 cut(s) 316, 1225, 1337
NlaIV GGNNCC 7 cut(s) 286, 341, 982, 991, 1009, 1029, 1227
NspV TTCGAA 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdiI GCCGGC 1 cut(s) 1230
PfeI GAWTC 2 cut(s) 1001, 1258
PflFI GACNNNGTC 1 cut(s) 812
PfoI TCCNGGA 1 cut(s) 1139
PleI GAGTC 1 cut(s) 803
PluTI GGCGCC 2 cut(s) 1031, 1229
PpsI GAGTC 1 cut(s) 803
PshAI GACNNNNGTC 1 cut(s) 995
Psp6I CCWGG 1 cut(s) 868
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 1 cut(s) 868
PspN4I GGNNCC 7 cut(s) 286, 341, 982, 991, 1009, 1029, 1227
PspPI GGNCC 6 cut(s) 688, 695, 790, 990, 1008, 1292
PsyI GACNNNGTC 1 cut(s) 812
RsaI GTAC 4 cut(s) 526, 545, 621, 953
RsaNI GTAC 4 cut(s) 525, 544, 620, 952
RseI CAYNNNNRTG 2 cut(s) 923, 1022
SacII CCGCGG 1 cut(s) 694
SaqAI TTAA 2 cut(s) 173, 332
Sau3AI GATC 1 cut(s) 1281
Sau96I GGNCC 6 cut(s) 688, 695, 790, 990, 1008, 1292
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 529, 870, 1141
SduI GDGCHC 1 cut(s) 184
SfaNI GCATC 3 cut(s) 375, 524, 927
SfoI GGCGCC 2 cut(s) 1029, 1227
Sfr303I CCGCGG 1 cut(s) 694
SfuI TTCGAA 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 694
SinI GGWCC 3 cut(s) 790, 990, 1008
SmiMI CAYNNNNRTG 2 cut(s) 923, 1022
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SspDI GGCGCC 2 cut(s) 1027, 1225
SspI AATATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 1113
StyD4I CCNGG 3 cut(s) 527, 868, 1139
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 4 cut(s) 69, 397, 524, 925
TaiI ACGT 2 cut(s) 906, 1175
TaqI TCGA 3 cut(s) 515, 762, 999
TauI GCSGC 6 cut(s) 671, 693, 696, 918, 937, 1235
TfiI GAWTC 2 cut(s) 1001, 1258
Tru1I TTAA 2 cut(s) 173, 332
Tru9I TTAA 2 cut(s) 173, 332
TscAI CASTG 6 cut(s) 325, 331, 368, 497, 792, 928
TseI GCWGC 6 cut(s) 37, 348, 598, 639, 780, 1204
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 2 cut(s) 802, 939
TspRI CASTG 6 cut(s) 325, 331, 368, 497, 792, 928
Tth111I GACNNNGTC 1 cut(s) 812
VpaK11BI GGWCC 3 cut(s) 790, 990, 1008
XapI RAATTY 4 cut(s) 163, 486, 731, 945
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 668
XmiI GTMKAC 1 cut(s) 583
XspI CTAG 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.