Prupe.6G156300_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022468
Physical Location & Seq
Reverse (-)
13797045 .. 13799055
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G156300.1

Sequence Viewer

Length: 492 bp
ATGCCAAAAACAGCGCGTGACACTATTCACGTGACGACCAGTCGTCGGGATTGTACGGTTCCTCTTCCTCATGCATCTATGTATCCAATAGCTCCCTGGGGCCTGCAAAGACTGTTGGAATATATGAAGCAAAATTATGGCAATCCCCCTATATATATCCATGAAAATGGTCAACAAACTGCACGCAATTCATCATTGGAGGATAGGTCGAGGGTAAAATATTTGCGTGGACATATCCAAAGTTTGCTTGCAGCTGTAAGGAATGGATCAAATGCCAAAGGCTATTTTATATGGTCCTTCATGGACTCCCTTGAGCTATTGAACGGCTATGAATCAAGCTTTGGCCTATACTACATCGATTTGGACGACCCTGATTTAAAAAGACAACCCAAACTCTCTGCTCATTGGTACTCCCATTTTCTAAAGAGCAAGAACCTCACCAGCTTAGATGGATTTCTTGAATCCCTTTCCCATGGTTACCATTCTCAGTAA

Protein Analysis

164

Amino Acids

18.78

Weight (kDa)

8.95

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022468)

Species Orthologous Gene IDs
prunus_persica Prupe.6G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0235001
rosa_rugosa Rorug07G0287000
rosa_samantha Rh7CG463000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AclWI GGATC 1 cut(s) 274
AcvI CACGTG 1 cut(s) 31
AfaI GTAC 2 cut(s) 55, 410
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 2 cut(s) 322, 461
AhdI GACNNNNNGTC 2 cut(s) 39, 42
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 5 cut(s) 92, 254, 316, 339, 444
AluI AGCT 5 cut(s) 92, 254, 316, 339, 444
AlwI GGATC 1 cut(s) 274
AoxI GGCC 2 cut(s) 100, 343
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 100, 294
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 31
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 93
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 294
BmeRI GACNNNNNGTC 2 cut(s) 39, 42
BmgT120I GGNCC 2 cut(s) 100, 294
BmiI GGNNCC 2 cut(s) 60, 101
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 95, 96, 472
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 95, 96, 472
BseLI CCNNNNNNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 102, 345
BshVI ATCGAT 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 102, 345
Bsp143I GATC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 472
BspANI GGCC 2 cut(s) 102, 345
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 60, 101
BspPI GGATC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 95, 96, 472
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 58, 114
Bst6I CTCTTC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 104, 184, 249
BstDEI CTNAG 2 cut(s) 445, 486
BstDSI CCRYGG 1 cut(s) 472
BstEII GGTNACC 1 cut(s) 476
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 95
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 357
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 102, 345
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 104, 184, 249
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 100, 294
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 2 cut(s) 54, 409
CviAII CATG 4 cut(s) 71, 161, 301, 473
CviJI RGCY 9 cut(s) 92, 102, 254, 282, 316, 327, 339, 345, 444
CviKI_1 RGCY 9 cut(s) 92, 102, 254, 282, 316, 327, 339, 345, 444
CviQI GTAC 2 cut(s) 54, 409
DdeI CTNAG 2 cut(s) 445, 486
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
DraI TTTAAA 1 cut(s) 378
DriI GACNNNNNGTC 2 cut(s) 39, 42
Eam1104I CTCTTC 1 cut(s) 69
Eam1105I GACNNNNNGTC 2 cut(s) 39, 42
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 294
Eco72I CACGTG 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 4 cut(s) 74, 164, 304, 476
FatI CATG 4 cut(s) 70, 160, 300, 472
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 102, 345
HhaI GCGC 1 cut(s) 16
Hin1II CATG 4 cut(s) 74, 164, 304, 476
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 3 cut(s) 305, 332, 461
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 173, 230
Hpy188III TCNNGA 2 cut(s) 47, 458
Hpy8I GTNNAC 2 cut(s) 173, 230
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 58, 114
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 74, 106, 182, 251
HpyF3I CTNAG 2 cut(s) 445, 486
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 74, 164, 304, 476
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 52, 82, 109, 116, 384, 454
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 83
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 17, 31, 476
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 56
MluCI AATT 2 cut(s) 133, 187
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 72, 78, 193, 204, 446
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 16
NcoI CCATGG 1 cut(s) 472
NdeII GATC 1 cut(s) 266
NlaIII CATG 4 cut(s) 74, 164, 304, 476
NlaIV GGNNCC 2 cut(s) 60, 101
NmuCI GTSAC 2 cut(s) 17, 31
NsiI ATGCAT 1 cut(s) 76
PasI CCCWGGG 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 2 cut(s) 332, 461
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 95
PspCI CACGTG 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 60, 101
PspPI GGNCC 2 cut(s) 100, 294
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 55, 410
RsaNI GTAC 2 cut(s) 54, 409
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 2 cut(s) 100, 294
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 97
SetI ASST 8 cut(s) 33, 94, 209, 256, 318, 341, 438, 446
SfaNI GCATC 1 cut(s) 83
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 133, 187
SspI AATATT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 58, 114
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 209, 357
TasI AATT 2 cut(s) 133, 187
TfiI GAWTC 2 cut(s) 332, 461
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TseFI GTSAC 2 cut(s) 17, 31
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 17, 31
TspDTI ATGAA 5 cut(s) 140, 177, 180, 289, 345
VpaK11BI GGWCC 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.