Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0022468

Physical Location & Seq

Genomic Coordinates Reverse (-)

27947672 .. 27950369

Gene Structure 2698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0287000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGGCGAAGAAGGAGCTGATGGCGTCAGCGCCGTGGAGGGTACAAGAAGAAGAGGAGGAAGAATTCAGCGACGCGAAGCTGAAAGTGACACGGCAGCAGGCGGGGGCGGAATCAACCATGCACGTCCCTCGCAAGAAAACCAAGCGCGCTCAGGACTATCAAGACGACGACGACTCCCTCACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCACCGTAACTATCAGTTCCTTCAACGAGTTTTTAGCATTGATACTATCGTGAAACCTCTTCCACCTTCCATGGCTTACAATGTCTCCCGCAACTTGAACTTCTTCACTCGCATTTTCACCCAGTTTTTTGATCCTGAAGGTATAGCAAATGCGCAGAAATCACTTGGTATAGGACAGGAAGAGAAAGCCCGTCGCGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko00460 ko00500 ko00940 ko01100 ko01110 ko01120 map00230 map00460 map00500 map00940 map01100 map01110 map01120

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

140

Amino Acids

16.38

Weight (kDa)

7.94

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022468)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G156300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0235001
rosa_rugosa	Rorug07G0287000
rosa_samantha	Rh7CG463000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
AccII	CGCG	3 cut(s)	80, 153, 414
AciI	CCGC	4 cut(s)	107, 113, 208, 307
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	242, 316
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	4 cut(s)	22, 85, 205, 216
AluI	AGCT	4 cut(s)	22, 85, 205, 216
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	4 cut(s)	37, 153, 155, 373
AsuHPI	GGTGA	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	22, 113
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmgBI	CACGTC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	334
Bpu10I	CCTNAGC	2 cut(s)	156, 201
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	38, 288
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 287, 317
Bse1I	ACTGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	38, 288
BseMII	CTCAG	3 cut(s)	170, 180, 192
BseNI	ACTGG	1 cut(s)	340
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	3 cut(s)	80, 153, 414
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	192, 349
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	4 cut(s)	107, 113, 208, 307
BspCNI	CTCAG	3 cut(s)	169, 181, 193
BspFNI	CGCG	3 cut(s)	80, 153, 414
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	38, 288
BssHII	GCGCGC	1 cut(s)	151
BssMI	GATC	2 cut(s)	192, 349
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	3 cut(s)	51, 282, 393
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	105, 153
BstDEI	CTNAG	3 cut(s)	156, 189, 201
BstDSI	CCRYGG	2 cut(s)	38, 288
BstFNI	CGCG	3 cut(s)	80, 153, 414
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	4 cut(s)	37, 153, 155, 373
BstKTI	GATC	2 cut(s)	195, 352
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	192, 349
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	3 cut(s)	80, 153, 414
BstV1I	GCAGC	1 cut(s)	112
BtgI	CCRYGG	2 cut(s)	38, 288
BtrI	CACGTC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	105, 153
CfoI	GCGC	4 cut(s)	37, 153, 155, 373
CseI	GACGC	3 cut(s)	18, 86, 403
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	124, 289
CviJI	RGCY	6 cut(s)	22, 85, 205, 216, 293, 407
CviKI_1	RGCY	6 cut(s)	22, 85, 205, 216, 293, 407
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	156, 189, 201
DpnI	GATC	2 cut(s)	194, 351
DpnII	GATC	2 cut(s)	192, 349
Eam1104I	CTCTTC	3 cut(s)	51, 282, 393
EarI	CTCTTC	3 cut(s)	51, 282, 393
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	127, 292
FaiI	YATR	4 cut(s)	125, 290, 362, 389
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	123, 288
FauI	CCCGC	2 cut(s)	100, 314
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	4 cut(s)	36, 152, 154, 372
GluI	GCNGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	38
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	3 cut(s)	18, 86, 403
HhaI	GCGC	4 cut(s)	37, 153, 155, 373
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	127, 292
Hin6I	GCGC	4 cut(s)	35, 151, 153, 371
HinP1I	GCGC	4 cut(s)	35, 151, 153, 371
HinfI	GANTC	2 cut(s)	116, 179
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	1 cut(s)	328
Hpy188III	TCNNGA	4 cut(s)	158, 167, 268, 353
Hpy99I	CGWCG	4 cut(s)	80, 176, 179, 414
HpyAV	CCTTC	4 cut(s)	10, 248, 294, 350
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	127
HpyF3I	CTNAG	3 cut(s)	156, 189, 201
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	127, 292
HspAI	GCGC	4 cut(s)	35, 151, 153, 371
Kzo9I	GATC	2 cut(s)	192, 349
LmnI	GCTCC	2 cut(s)	19, 210
LpnPI	CCDG	6 cut(s)	89, 143, 213, 353, 366, 380
Lsp1109I	GCAGC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	91, 224
MalI	GATC	2 cut(s)	194, 351
MboI	GATC	2 cut(s)	192, 349
MboII	GAAGA	7 cut(s)	25, 65, 68, 77, 269, 313, 410
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	36, 52, 55, 144, 194, 285
MroXI	GAANNNNTTC	1 cut(s)	320
MspI	CCGG	1 cut(s)	418
MvnI	CGCG	3 cut(s)	80, 153, 414
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	192, 349
NlaIII	CATG	2 cut(s)	127, 292
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	372
PauI	GCGCGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	207
PteI	GCGCGC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	192, 349
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	24, 87, 132, 207, 218, 277, 286, 361
SfcI	CTRYAG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	4 cut(s)	107, 113, 208, 307
SstI	GAGCTC	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	5, 195
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	116
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.