Prupe.6G189400_v2.0.a1

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0020129
Physical Location & Seq
Forward (+)
19728616 .. 19728960
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G189400.1

Sequence Viewer

Length: 345 bp
ATGCAAATATTTGTTAAGACGCTGACCGGAAAGACTATCACTCTTAAGGTGAAGGGTTCGGATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAGCATCCAGAAGGAATCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGGTATGCAGATCTTTGTTAAGACCTTGACTGGCAAGACCATCACTCTTGATGTGGAGAGCTCTGATACCATAGACAATGTGTTATGTGTTTTTGTTTGGCTCTGTCCTGGGGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

115

Amino Acids

12.68

Weight (kDa)

8.6

Isoelectric Point (pI)

14.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020129)

Species Orthologous Gene IDs
prunus_persica Prupe.2G096200_v2.0.a1 Prupe.6G189400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0396371
rosa_rugosa Rorug03G0349500
rosa_samantha Rh4AG067700 Rh4CG073600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 148, 285
AluI AGCT 2 cut(s) 148, 285
Alw21I GWGCWC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 149, 272
BciT130I CCWGG 1 cut(s) 333
BciVI GTATCC 1 cut(s) 55
BfaI CTAG 2 cut(s) 149, 343
BfrI CTTAAG 1 cut(s) 44
BfuI GTATCC 1 cut(s) 55
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 189, 211
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 160, 180
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 333
BstAFI CTTAAG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 160, 180
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuI GTATCC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 160, 180
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 28
CviJI RGCY 4 cut(s) 127, 148, 285, 325
CviKI_1 RGCY 4 cut(s) 127, 148, 285, 325
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 287
FaiI YATR 5 cut(s) 68, 177, 230, 296, 310
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 2 cut(s) 167, 167
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 2 cut(s) 149, 343
GluI GCNGC 1 cut(s) 146
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 28
HinfI GANTC 3 cut(s) 88, 105, 191
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 61, 289
Hpy188III TCNNGA 4 cut(s) 92, 113, 184, 272
HpyAV CCTTC 3 cut(s) 46, 95, 181
HpyCH4V TGCA 3 cut(s) 4, 202, 232
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 7 cut(s) 40, 123, 126, 131, 197, 240, 318
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 189, 211
MaeI CTAG 2 cut(s) 149, 343
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 287
MnlI CCTC 4 cut(s) 117, 120, 145, 215
MseI TTAA 3 cut(s) 15, 45, 243
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
NdeII GATC 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 88, 105, 191
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 162
PspPPI RGGWCCY 1 cut(s) 162
PsuI RGATCY 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 74
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 3 cut(s) 15, 45, 243
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 287
SetI ASST 6 cut(s) 51, 150, 200, 226, 251, 287
SfaNI GCATC 2 cut(s) 189, 211
SinI GGWCC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 149, 343
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 331
TfiI GAWTC 3 cut(s) 88, 105, 191
Tru1I TTAA 3 cut(s) 15, 45, 243
Tru9I TTAA 3 cut(s) 15, 45, 243
TseI GCWGC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 203
Tth111I GACNNNGTC 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 162
XspI CTAG 2 cut(s) 149, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.