Prupe.6G200100_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022443
Physical Location & Seq
Forward (+)
20712848 .. 20713764
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G200100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 714 bp
ATGAAGAAATTGCAATCTTTGTTACGTATTGAATCAGAAGGAAACATTATTAGACTTATTGGAAGTATGACCCAGCTTAAATTCCTTGGCATTACAAATGTGAAAGAAAGAGACGAGGAGGACCTATGTGCCTCAATTCAAGAGATGAAGGTCCTTTCCCGCTTGTTTTTATTTGTATCTCATGGAGAGGAATTTCTTCGAGTTGACGCATTGTCTTCACCGTCTCCCTACCTTGATAGACTTGAATTGGTCGGCAAACTGGAAAAGGTTCCACATTGGTTTTGTTCGCTCCACTCTCTCACATATATGAACCTGCAAGGGTCCAGACTTGAAGAAGATTTACTACCTCATATTGAAGCATTGCCCTCTCTACTTTCTCTTTCCCTTAATAATGCCTCTGTTAGGAAAGAGTTATGTTTCAACAGAGGCTTTGTGAAGCTTCGGCATTTGTGGTTATGGAATCTCGCATTATTAAATAAGATAACTATAGAAAAAGGGGCGATGCCAAATCTCGAGTTCTTAAGCATTCGCCGTTGCTTGACATTAGAAACATTGCCACAGGGTATTGAGCACCTTACTAAACTACAACGATTCAGATTTTATATTGTTTCAGAGAAGTTTAGAGAGTCCATAAAAGAAGGAGGTGTGGATCATCCAAGGATGCTACTCGTCGACGAGAGATGTAAGAAATATACAAACAAGTCCTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

238

Amino Acids

27.61

Weight (kDa)

8.77

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022443)

Species Orthologous Gene IDs
prunus_persica Prupe.2G067900_v2.0.a1 Prupe.6G199200_v2.0.a1 Prupe.6G199900_v2.0.a1 Prupe.6G200100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 672
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 2 cut(s) 80, 191
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 520
AgsI TTSAA 6 cut(s) 32, 140, 245, 332, 356, 421
AhdI GACNNNNNGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 2 cut(s) 76, 439
AluI AGCT 2 cut(s) 76, 439
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 2 cut(s) 105, 228
AlwI GGATC 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 512
ApoI RAATTY 2 cut(s) 80, 191
Asp700I GAANNNNTTC 2 cut(s) 195, 267
AspS9I GGNCC 3 cut(s) 121, 151, 321
AsuHPI GGTGA 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 3 cut(s) 121, 151, 321
BarI GAAGNNNNNNTAC 4 cut(s) 324, 327, 356, 359
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 573
BceAI ACGGC 1 cut(s) 516
BciT130I CCWGG 1 cut(s) 706
BcoDI GTCTC 2 cut(s) 105, 228
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 706
Bme18I GGWCC 3 cut(s) 121, 151, 321
BmeRI GACNNNNNGTC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 3 cut(s) 121, 151, 321
BmiI GGNNCC 2 cut(s) 270, 322
BmrFI CCNGG 1 cut(s) 706
BmsI GCATC 2 cut(s) 492, 651
BpiI GAAGAC 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 85, 656, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 359, 551
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 3 cut(s) 85, 656, 705
BseGI GGATG 2 cut(s) 652, 666
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 359, 551
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 105, 228
BsmBI CGTCTC 2 cut(s) 105, 228
BsmI GAATGC 1 cut(s) 525
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 1 cut(s) 649
BspACI CCGC 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 270, 322
BspMI ACCTGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 657
BspTI CTTAAG 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 359, 551
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 85, 656, 705
BssMI GATC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 85, 656
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 2 cut(s) 652, 666
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 2 cut(s) 105, 228
BstMBI GATC 1 cut(s) 649
BstNI CCWGG 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 704
BstSFI CTRYAG 1 cut(s) 486
BstSNI TACGTA 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 652, 666
BveI ACCTGC 1 cut(s) 321
Cfr13I GGNCC 3 cut(s) 121, 151, 321
CseI GACGC 1 cut(s) 215
CviAII CATG 1 cut(s) 182
CviJI RGCY 3 cut(s) 76, 429, 439
CviKI_1 RGCY 3 cut(s) 76, 429, 439
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DriI GACNNNNNGTC 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 85, 656
Eco47I GGWCC 3 cut(s) 121, 151, 321
Eco88I CYCGRG 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoO109I RGGNCCY 2 cut(s) 121, 151
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 2 cut(s) 85, 656
ErhI CCWWGG 2 cut(s) 85, 656
Esp3I CGTCTC 2 cut(s) 105, 228
FaeI CATG 1 cut(s) 185
FatI CATG 1 cut(s) 181
FauI CCCGC 1 cut(s) 167
FblI GTMKAC 1 cut(s) 672
FokI GGATG 2 cut(s) 639, 673
GsaI CCCAGC 1 cut(s) 76
HgaI GACGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 185
HincII GTYRAC 2 cut(s) 205, 673
HindII GTYRAC 2 cut(s) 205, 673
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 4 cut(s) 32, 460, 591, 626
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 205, 673
Hpy188I TCNGA 3 cut(s) 37, 596, 613
Hpy188III TCNNGA 3 cut(s) 140, 324, 512
Hpy8I GTNNAC 2 cut(s) 205, 673
Hpy99I CGWCG 2 cut(s) 674, 677
HpyAV CCTTC 3 cut(s) 32, 142, 632
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 13, 316
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 6 cut(s) 86, 245, 326, 337, 545, 691
LweI GCATC 2 cut(s) 492, 651
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 21
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 5 cut(s) 16, 188, 207, 344, 347
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 5 cut(s) 8, 80, 135, 191, 245
MlyI GAGTC 1 cut(s) 635
MnlI CCTC 9 cut(s) 109, 112, 142, 181, 357, 376, 406, 419, 635
MroXI GAANNNNTTC 2 cut(s) 195, 267
MseI TTAA 4 cut(s) 78, 387, 473, 521
MslI CAYNNNNRTG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 1 cut(s) 706
NdeII GATC 1 cut(s) 649
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 270, 322
PaeR7I CTCGAG 1 cut(s) 512
PctI GAATGC 1 cut(s) 525
PdmI GAANNNNTTC 2 cut(s) 195, 267
PfeI GAWTC 3 cut(s) 32, 460, 591
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 2 cut(s) 121, 151
Psp5II RGGWCCY 2 cut(s) 121, 151
Psp6I CCWGG 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 2 cut(s) 270, 322
PspPI GGNCC 3 cut(s) 121, 151, 321
PspPPI RGGWCCY 2 cut(s) 121, 151
RseI CAYNNNNRTG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 671
SaqAI TTAA 4 cut(s) 78, 387, 473, 521
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 3 cut(s) 121, 151, 321
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 706
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 2 cut(s) 492, 651
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 512
SgrDI CGTCGACG 1 cut(s) 671
SinI GGWCC 3 cut(s) 121, 151, 321
SlaI CTCGAG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 512, 520
SmoI CTYRAG 2 cut(s) 512, 520
SnaBI TACGTA 1 cut(s) 26
Sse9I AATT 5 cut(s) 8, 80, 135, 191, 245
SsiI CCGC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 2 cut(s) 85, 656
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 28
TaqI TCGA 3 cut(s) 199, 513, 672
TasI AATT 5 cut(s) 8, 80, 135, 191, 245
TfiI GAWTC 3 cut(s) 32, 460, 591
Tru1I TTAA 4 cut(s) 78, 387, 473, 521
Tru9I TTAA 4 cut(s) 78, 387, 473, 521
TspDTI ATGAA 3 cut(s) 17, 161, 323
Vha464I CTTAAG 1 cut(s) 520
VpaK11BI GGWCC 3 cut(s) 121, 151, 321
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 2 cut(s) 80, 191
XhoI CTCGAG 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 2 cut(s) 195, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.