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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37070 AT2G37070 AT3G53320 |
| fragaria_vesca | FvH4_6g15330 FvH4_6g15330 FvH4_6g15330 |
| malus_domestica | MD04G1104400.v1.1 MD12G1124300.v1.1 |
| prunus_persica | Prupe.6G241300_v2.0.a1 Prupe.6G241300_v2.0.a1 Prupe.6G241300_v2.0.a1 |
| pyrus_communis | pycom04g09930 pycom12g12270 |
| rosa_chinensis | RchiOBHm_Chr3g0468801 |
| rosa_laevigata | RLG00000024408 |
| rosa_multiflora | Rmu_sc0001639.1_g000024 |
| rosa_roxburghii | Rroxscaffold_6G00412550 |
| rosa_rugosa | Rorug03G0096600 |
| rosa_samantha | Rh3AG146300 Rh3BG168900 Rh3DG167200 |
| rosa_wichuraiana | Rw3G013760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 54 |
| AatII | GACGTC | 1 cut(s) | 69 |
| Acc16I | TGCGCA | 1 cut(s) | 287 |
| Acc36I | ACCTGC | 1 cut(s) | 1690 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1529 |
| AccI | GTMKAC | 2 cut(s) | 377, 2048 |
| AccIII | TCCGGA | 1 cut(s) | 1502 |
| AciI | CCGC | 3 cut(s) | 750, 1103, 2222 |
| AclWI | GGATC | 4 cut(s) | 356, 369, 438, 1349 |
| AcsI | RAATTY | 4 cut(s) | 346, 423, 435, 712 |
| AcuI | CTGAAG | 2 cut(s) | 387, 1754 |
| AcyI | GRCGYC | 2 cut(s) | 49, 66 |
| AfaI | GTAC | 2 cut(s) | 278, 1033 |
| AflII | CTTAAG | 1 cut(s) | 922 |
| AflIII | ACRYGT | 1 cut(s) | 722 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 70 |
| AjiI | CACGTC | 1 cut(s) | 193 |
| AjnI | CCWGG | 7 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1808, 1840 |
| Alw21I | GWGCWC | 1 cut(s) | 1480 |
| Alw44I | GTGCAC | 1 cut(s) | 1476 |
| AlwI | GGATC | 4 cut(s) | 356, 369, 438, 1349 |
| Aor13HI | TCCGGA | 1 cut(s) | 1502 |
| AoxI | GGCC | 4 cut(s) | 30, 501, 1648, 1946 |
| ApaLI | GTGCAC | 1 cut(s) | 1476 |
| ApeKI | GCWGC | 7 cut(s) | 40, 1210, 1338, 1787, 1940, 2018, 2243 |
| ApoI | RAATTY | 4 cut(s) | 346, 423, 435, 712 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1033 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 4 cut(s) | 950, 1251, 1648, 1946 |
| AsuC2I | CCSGG | 1 cut(s) | 1668 |
| AsuHPI | GGTGA | 8 cut(s) | 310, 661, 972, 1218, 1364, 1462, 1512, 1558 |
| AsuII | TTCGAA | 1 cut(s) | 617 |
| AsuNHI | GCTAGC | 1 cut(s) | 1310 |
| AvaII | GGWCC | 2 cut(s) | 950, 1251 |
| BaeGI | GKGCMC | 2 cut(s) | 1480, 1627 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanII | GRGCYC | 2 cut(s) | 904, 1988 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1090, 1122 |
| BauI | CACGAG | 1 cut(s) | 753 |
| Bbv12I | GWGCWC | 1 cut(s) | 1480 |
| BbvI | GCAGC | 7 cut(s) | 52, 1197, 1350, 1774, 1927, 2005, 2230 |
| BccI | CCATC | 5 cut(s) | 673, 1141, 1343, 2033, 2177 |
| BceAI | ACGGC | 1 cut(s) | 1501 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2182, 2216 |
| BciT130I | CCWGG | 7 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640 |
| BciVI | GTATCC | 1 cut(s) | 325 |
| BclI | TGATCA | 1 cut(s) | 1393 |
| BcnI | CCSGG | 1 cut(s) | 1668 |
| BfmI | CTRYAG | 2 cut(s) | 1344, 1941 |
| BfrI | CTTAAG | 1 cut(s) | 922 |
| BfuAI | ACCTGC | 1 cut(s) | 1690 |
| BfuI | GTATCC | 1 cut(s) | 325 |
| BglII | AGATCT | 1 cut(s) | 1325 |
| BisI | GCNGC | 7 cut(s) | 41, 1211, 1339, 1788, 1941, 2019, 2244 |
| BlpI | GCTNAGC | 1 cut(s) | 212 |
| BlsI | GCNGC | 7 cut(s) | 42, 1212, 1340, 1789, 1942, 2020, 2245 |
| BmcAI | AGTACT | 1 cut(s) | 1033 |
| Bme1390I | CCNGG | 8 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640, 1668 |
| Bme18I | GGWCC | 2 cut(s) | 950, 1251 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 70 |
| BmgBI | CACGTC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 4 cut(s) | 950, 1251, 1648, 1946 |
| BmiI | GGNNCC | 4 cut(s) | 249, 363, 903, 1649 |
| BmrFI | CCNGG | 8 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640, 1668 |
| BmsI | GCATC | 5 cut(s) | 560, 1711, 1787, 2071, 2110 |
| BmtI | GCTAGC | 1 cut(s) | 1314 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1421 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 823, 855 |
| BpmI | CTGGAG | 3 cut(s) | 126, 1220, 1428 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 212 |
| Bpu14I | TTCGAA | 1 cut(s) | 617 |
| BpuEI | CTTGAG | 4 cut(s) | 227, 624, 1795, 2209 |
| BpuMI | CCSGG | 1 cut(s) | 1668 |
| BsaAI | YACGTR | 1 cut(s) | 2138 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1353 |
| BsaHI | GRCGYC | 2 cut(s) | 49, 66 |
| BsaI | GGTCTC | 2 cut(s) | 102, 1854 |
| BsaJI | CCNNGG | 5 cut(s) | 698, 969, 1122, 1638, 1639 |
| BsaWI | WCCGGW | 3 cut(s) | 114, 554, 1502 |
| Bse1I | ACTGG | 4 cut(s) | 321, 895, 1099, 1411 |
| Bse3DI | GCAATG | 1 cut(s) | 905 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1353 |
| BseAI | TCCGGA | 1 cut(s) | 1502 |
| BseBI | CCWGG | 7 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640 |
| BseDI | CCNNGG | 5 cut(s) | 698, 969, 1122, 1638, 1639 |
| BseGI | GGATG | 6 cut(s) | 229, 551, 571, 965, 1588, 1733 |
| BseJI | GATNNNNATC | 1 cut(s) | 1353 |
| BseMI | GCAATG | 1 cut(s) | 905 |
| BseMII | CTCAG | 6 cut(s) | 66, 1269, 1419, 1433, 2094, 2243 |
| BseNI | ACTGG | 4 cut(s) | 321, 895, 1099, 1411 |
| BseSI | GKGCMC | 2 cut(s) | 1480, 1627 |
| BseXI | GCAGC | 7 cut(s) | 52, 1197, 1350, 1774, 1927, 2005, 2230 |
| BseYI | CCCAGC | 1 cut(s) | 1987 |
| BsgI | GTGCAG | 2 cut(s) | 59, 345 |
| BshFI | GGCC | 4 cut(s) | 32, 503, 1650, 1948 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1480 |
| BsiSI | CCGG | 4 cut(s) | 115, 555, 1503, 1667 |
| BslFI | GGGAC | 1 cut(s) | 1791 |
| BsmBI | CGTCTC | 3 cut(s) | 40, 73, 2144 |
| BsmFI | GGGAC | 1 cut(s) | 1791 |
| BsnI | GGCC | 4 cut(s) | 32, 503, 1650, 1948 |
| Bso31I | GGTCTC | 2 cut(s) | 102, 1854 |
| Bsp119I | TTCGAA | 1 cut(s) | 617 |
| Bsp1286I | GDGCHC | 4 cut(s) | 904, 1480, 1627, 1988 |
| Bsp13I | TCCGGA | 1 cut(s) | 1502 |
| Bsp143I | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 212 |
| BspACI | CCGC | 3 cut(s) | 750, 1103, 2222 |
| BspANI | GGCC | 4 cut(s) | 32, 503, 1650, 1948 |
| BspCNI | CTCAG | 6 cut(s) | 67, 1268, 1420, 1432, 2095, 2242 |
| BspEI | TCCGGA | 1 cut(s) | 1502 |
| BspLI | GGNNCC | 4 cut(s) | 249, 363, 903, 1649 |
| BspMAI | CTGCAG | 1 cut(s) | 1945 |
| BspMI | ACCTGC | 1 cut(s) | 1690 |
| BspOI | GCTAGC | 1 cut(s) | 1314 |
| BspPI | GGATC | 4 cut(s) | 356, 369, 438, 1349 |
| BspQI | GCTCTTC | 1 cut(s) | 363 |
| BspT104I | TTCGAA | 1 cut(s) | 617 |
| BspTI | CTTAAG | 1 cut(s) | 922 |
| BspTNI | GGTCTC | 2 cut(s) | 102, 1854 |
| BsrDI | GCAATG | 1 cut(s) | 905 |
| BsrI | ACTGG | 4 cut(s) | 321, 895, 1099, 1411 |
| BssECI | CCNNGG | 5 cut(s) | 698, 969, 1122, 1638, 1639 |
| BssMI | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| BssNI | GRCGYC | 2 cut(s) | 49, 66 |
| BssSI | CACGAG | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 1 cut(s) | 969 |
| Bst2BI | CACGAG | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 7 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640 |
| Bst4CI | ACNGT | 3 cut(s) | 741, 1301, 1937 |
| Bst6I | CTCTTC | 1 cut(s) | 363 |
| BstACI | GRCGYC | 2 cut(s) | 49, 66 |
| BstAFI | CTTAAG | 1 cut(s) | 922 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1784 |
| BstBAI | YACGTR | 1 cut(s) | 2138 |
| BstBI | TTCGAA | 1 cut(s) | 617 |
| BstC8I | GCNNGC | 5 cut(s) | 218, 1312, 1610, 1776, 2241 |
| BstF5I | GGATG | 6 cut(s) | 229, 551, 571, 965, 1588, 1733 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 7 cut(s) | 136, 364, 446, 965, 1328, 1357, 1396 |
| BstMBI | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 173, 217, 758, 1242, 1672, 1784 |
| BstNI | CCWGG | 7 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640 |
| BstNSI | RCATGY | 1 cut(s) | 726 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1421 |
| BstSCI | CCNGG | 8 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638, 1666 |
| BstSFI | CTRYAG | 2 cut(s) | 1344, 1941 |
| BstSLI | GKGCMC | 2 cut(s) | 1480, 1627 |
| BstV1I | GCAGC | 7 cut(s) | 52, 1197, 1350, 1774, 1927, 2005, 2230 |
| BstX2I | RGATCY | 3 cut(s) | 361, 443, 1325 |
| BstYI | RGATCY | 3 cut(s) | 361, 443, 1325 |
| BsuI | GTATCC | 1 cut(s) | 325 |
| BsuRI | GGCC | 4 cut(s) | 32, 503, 1650, 1948 |
| BtrI | CACGTC | 1 cut(s) | 193 |
| BtsCI | GGATG | 6 cut(s) | 229, 551, 571, 965, 1588, 1733 |
| BtsIMutI | CAGTG | 3 cut(s) | 328, 447, 1448 |
| BveI | ACCTGC | 1 cut(s) | 1690 |
| Cac8I | GCNNGC | 5 cut(s) | 218, 1312, 1610, 1776, 2241 |
| CfoI | GCGC | 1 cut(s) | 288 |
| Cfr13I | GGNCC | 4 cut(s) | 950, 1251, 1648, 1946 |
| CseI | GACGC | 2 cut(s) | 57, 516 |
| Csp6I | GTAC | 2 cut(s) | 277, 1032 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 589, 624 |
| CviAII | CATG | 5 cut(s) | 382, 723, 1883, 1907, 2009 |
| CviQI | GTAC | 2 cut(s) | 277, 1032 |
| DpnI | GATC | 7 cut(s) | 135, 363, 445, 964, 1327, 1356, 1395 |
| DpnII | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| DraI | TTTAAA | 1 cut(s) | 1284 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 54 |
| DriI | GACNNNNNGTC | 1 cut(s) | 70 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 363 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 70 |
| EarI | CTCTTC | 1 cut(s) | 363 |
| EciI | GGCGGA | 2 cut(s) | 1092, 2237 |
| Eco130I | CCWWGG | 1 cut(s) | 969 |
| Eco24I | GRGCYC | 2 cut(s) | 904, 1988 |
| Eco31I | GGTCTC | 2 cut(s) | 102, 1854 |
| Eco47I | GGWCC | 2 cut(s) | 950, 1251 |
| Eco57I | CTGAAG | 2 cut(s) | 387, 1754 |
| EcoRI | GAATTC | 2 cut(s) | 346, 423 |
| EcoRII | CCWGG | 7 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638 |
| EcoT14I | CCWWGG | 1 cut(s) | 969 |
| EcoT38I | GRGCYC | 2 cut(s) | 904, 1988 |
| ErhI | CCWWGG | 1 cut(s) | 969 |
| Esp3I | CGTCTC | 3 cut(s) | 40, 73, 2144 |
| FaeI | CATG | 5 cut(s) | 385, 726, 1886, 1910, 2012 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 283, 315, 463, 495, 2059, 2091 |
| FaqI | GGGAC | 1 cut(s) | 1791 |
| FatI | CATG | 5 cut(s) | 381, 722, 1882, 1906, 2008 |
| FauNDI | CATATG | 2 cut(s) | 411, 2128 |
| FbaI | TGATCA | 1 cut(s) | 1393 |
| FblI | GTMKAC | 2 cut(s) | 377, 2048 |
| Fnu4HI | GCNGC | 7 cut(s) | 41, 1211, 1339, 1788, 1941, 2019, 2244 |
| FokI | GGATG | 6 cut(s) | 216, 538, 578, 952, 1575, 1720 |
| FriOI | GRGCYC | 2 cut(s) | 904, 1988 |
| Fsp4HI | GCNGC | 7 cut(s) | 41, 1211, 1339, 1788, 1941, 2019, 2244 |
| FspI | TGCGCA | 1 cut(s) | 287 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GluI | GCNGC | 7 cut(s) | 41, 1211, 1339, 1788, 1941, 2019, 2244 |
| GsaI | CCCAGC | 1 cut(s) | 1991 |
| GsuI | CTGGAG | 3 cut(s) | 126, 1220, 1428 |
| HaeIII | GGCC | 4 cut(s) | 32, 503, 1650, 1948 |
| HapII | CCGG | 4 cut(s) | 115, 555, 1503, 1667 |
| HgaI | GACGC | 2 cut(s) | 57, 516 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1I | GRCGYC | 2 cut(s) | 49, 66 |
| Hin1II | CATG | 5 cut(s) | 385, 726, 1886, 1910, 2012 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HincII | GTYRAC | 1 cut(s) | 1185 |
| HindII | GTYRAC | 1 cut(s) | 1185 |
| HindIII | AAGCTT | 1 cut(s) | 1673 |
| HpaII | CCGG | 4 cut(s) | 115, 555, 1503, 1667 |
| HphI | GGTGA | 8 cut(s) | 310, 661, 972, 1218, 1364, 1462, 1512, 1558 |
| Hpy166II | GTNNAC | 5 cut(s) | 378, 728, 1185, 1478, 2049 |
| Hpy188I | TCNGA | 7 cut(s) | 76, 130, 238, 1258, 2062, 2104, 2204 |
| Hpy8I | GTNNAC | 5 cut(s) | 378, 728, 1185, 1478, 2049 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyCH4III | ACNGT | 3 cut(s) | 741, 1301, 1937 |
| HpyCH4IV | ACGT | 4 cut(s) | 66, 192, 687, 2137 |
| HpyCH4V | TGCA | 9 cut(s) | 40, 326, 691, 1378, 1478, 1790, 1943, 2021, 2123 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 173, 217, 758, 1242, 1672, 1784 |
| HpySE526I | ACGT | 4 cut(s) | 66, 192, 687, 2137 |
| Hsp92I | GRCGYC | 2 cut(s) | 49, 66 |
| Hsp92II | CATG | 5 cut(s) | 385, 726, 1886, 1910, 2012 |
| HspAI | GCGC | 1 cut(s) | 286 |
| Kpn2I | TCCGGA | 1 cut(s) | 1502 |
| Ksp22I | TGATCA | 1 cut(s) | 1393 |
| Kzo9I | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| LguI | GCTCTTC | 1 cut(s) | 363 |
| LmnI | GCTCC | 3 cut(s) | 907, 1462, 2204 |
| Lsp1109I | GCAGC | 7 cut(s) | 52, 1197, 1350, 1774, 1927, 2005, 2230 |
| LweI | GCATC | 5 cut(s) | 560, 1711, 1787, 2071, 2110 |
| MaeII | ACGT | 4 cut(s) | 66, 192, 687, 2137 |
| MaeIII | GTNAC | 6 cut(s) | 223, 414, 589, 1431, 1518, 2026 |
| MalI | GATC | 7 cut(s) | 135, 363, 445, 964, 1327, 1356, 1395 |
| MboI | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| MboII | GAAGA | 9 cut(s) | 143, 380, 527, 606, 969, 999, 1320, 2129, 2183 |
| MflI | RGATCY | 3 cut(s) | 361, 443, 1325 |
| MhlI | GDGCHC | 4 cut(s) | 904, 1480, 1627, 1988 |
| MlyI | GAGTC | 4 cut(s) | 248, 1268, 1411, 2221 |
| MmeI | TCCRAC | 2 cut(s) | 1873, 2182 |
| MroI | TCCGGA | 1 cut(s) | 1502 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1033 |
| MseI | TTAA | 4 cut(s) | 824, 923, 1283, 1740 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2007 |
| MspCI | CTTAAG | 1 cut(s) | 922 |
| MspI | CCGG | 4 cut(s) | 115, 555, 1503, 1667 |
| MspR9I | CCNGG | 8 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640, 1668 |
| MvaI | CCWGG | 7 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 173, 217, 758, 1242, 1672, 1784 |
| NciI | CCSGG | 1 cut(s) | 1668 |
| NdeI | CATATG | 2 cut(s) | 411, 2128 |
| NdeII | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| NheI | GCTAGC | 1 cut(s) | 1310 |
| NlaIII | CATG | 5 cut(s) | 385, 726, 1886, 1910, 2012 |
| NlaIV | GGNNCC | 4 cut(s) | 249, 363, 903, 1649 |
| NmuCI | GTSAC | 2 cut(s) | 1518, 2026 |
| NsbI | TGCGCA | 1 cut(s) | 287 |
| NspI | RCATGY | 1 cut(s) | 726 |
| NspV | TTCGAA | 1 cut(s) | 617 |
| PasI | CCCWGGG | 1 cut(s) | 1639 |
| PciI | ACATGT | 1 cut(s) | 722 |
| PciSI | GCTCTTC | 1 cut(s) | 363 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1033 |
| PfeI | GAWTC | 6 cut(s) | 83, 452, 652, 1085, 2063, 2249 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1529 |
| PfoI | TCCNGGA | 2 cut(s) | 946, 1088 |
| PkrI | GCNGC | 7 cut(s) | 42, 1212, 1340, 1789, 1942, 2020, 2245 |
| PleI | GAGTC | 4 cut(s) | 247, 1267, 1411, 2221 |
| PpsI | GAGTC | 4 cut(s) | 247, 1267, 1411, 2221 |
| Ppu21I | YACGTR | 1 cut(s) | 2138 |
| PscI | ACATGT | 1 cut(s) | 722 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1421 |
| Psp6I | CCWGG | 7 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638 |
| PspFI | CCCAGC | 1 cut(s) | 1987 |
| PspGI | CCWGG | 7 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638 |
| PspN4I | GGNNCC | 4 cut(s) | 249, 363, 903, 1649 |
| PspPI | GGNCC | 4 cut(s) | 950, 1251, 1648, 1946 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 565, 597 |
| PstI | CTGCAG | 1 cut(s) | 1945 |
| PsuI | RGATCY | 3 cut(s) | 361, 443, 1325 |
| RsaI | GTAC | 2 cut(s) | 278, 1033 |
| RsaNI | GTAC | 2 cut(s) | 277, 1032 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2007 |
| SapI | GCTCTTC | 1 cut(s) | 363 |
| SaqAI | TTAA | 4 cut(s) | 824, 923, 1283, 1740 |
| SatI | GCNGC | 7 cut(s) | 41, 1211, 1339, 1788, 1941, 2019, 2244 |
| Sau3AI | GATC | 7 cut(s) | 133, 361, 443, 962, 1325, 1354, 1393 |
| Sau96I | GGNCC | 4 cut(s) | 950, 1251, 1648, 1946 |
| ScaI | AGTACT | 1 cut(s) | 1033 |
| SchI | GAGTC | 4 cut(s) | 248, 1268, 1411, 2221 |
| ScrFI | CCNGG | 8 cut(s) | 420, 699, 948, 1090, 1123, 1149, 1640, 1668 |
| SduI | GDGCHC | 4 cut(s) | 904, 1480, 1627, 1988 |
| SfaNI | GCATC | 5 cut(s) | 560, 1711, 1787, 2071, 2110 |
| SfcI | CTRYAG | 2 cut(s) | 1344, 1941 |
| SfuI | TTCGAA | 1 cut(s) | 617 |
| SinI | GGWCC | 2 cut(s) | 950, 1251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2007 |
| SmlI | CTYRAG | 5 cut(s) | 206, 639, 922, 1810, 2188 |
| SmoI | CTYRAG | 5 cut(s) | 206, 639, 922, 1810, 2188 |
| SsiI | CCGC | 3 cut(s) | 750, 1103, 2222 |
| StyD4I | CCNGG | 8 cut(s) | 418, 697, 946, 1088, 1121, 1147, 1638, 1666 |
| StyI | CCWWGG | 1 cut(s) | 969 |
| TaaI | ACNGT | 3 cut(s) | 741, 1301, 1937 |
| TaiI | ACGT | 4 cut(s) | 69, 195, 690, 2140 |
| TaqI | TCGA | 7 cut(s) | 12, 63, 584, 617, 1277, 1464, 2169 |
| TatI | WGTACW | 2 cut(s) | 276, 1031 |
| TfiI | GAWTC | 6 cut(s) | 83, 452, 652, 1085, 2063, 2249 |
| Tru1I | TTAA | 4 cut(s) | 824, 923, 1283, 1740 |
| Tru9I | TTAA | 4 cut(s) | 824, 923, 1283, 1740 |
| TscAI | CASTG | 3 cut(s) | 328, 454, 1448 |
| TseFI | GTSAC | 2 cut(s) | 1518, 2026 |
| TseI | GCWGC | 7 cut(s) | 40, 1210, 1338, 1787, 1940, 2018, 2243 |
| Tsp45I | GTSAC | 2 cut(s) | 1518, 2026 |
| TspDTI | ATGAA | 8 cut(s) | 428, 582, 722, 872, 1026, 1760, 1938, 2145 |
| TspGWI | ACGGA | 1 cut(s) | 2168 |
| TspRI | CASTG | 3 cut(s) | 328, 454, 1448 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1529 |
| Vha464I | CTTAAG | 1 cut(s) | 922 |
| VneI | GTGCAC | 1 cut(s) | 1476 |
| VpaK11BI | GGWCC | 2 cut(s) | 950, 1251 |
| XapI | RAATTY | 4 cut(s) | 346, 423, 435, 712 |
| XbaI | TCTAGA | 1 cut(s) | 959 |
| XceI | RCATGY | 1 cut(s) | 726 |
| XmiI | GTMKAC | 2 cut(s) | 377, 2048 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1033 |
| ZraI | GACGTC | 1 cut(s) | 67 |
| ZrmI | AGTACT | 1 cut(s) | 1033 |