Prupe.6G336000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022242
Physical Location & Seq
Reverse (-)
29204073 .. 29205053
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G336000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 222 bp
ATGCCGGGTTGGGGACCGCCGCCGGGAGGACCTCCAGGGCCGGCAGGGCCATGTGGCTGCTGTGCTTTCTGTTGTGATGGAATTTTCAGGCTTTTTTCTTCATGTTTCTATCTCTTGTGCTGCTGTTGCATCCTAGAGAACTGCTGTGGACCTATGTTTGGTGGGCCACCTGGACCCCCTGGCCCACCTGGCGGGCCCCCTGGACCTCCCCCGCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.25

Weight (kDa)

4.37

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04150
malus_domestica MD00G1051100.v1.1
prunus_persica Prupe.6G336000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0452741

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 17, 20, 192, 212
AcsI RAATTY 1 cut(s) 81
AfiI CCNNNNNNNGG 6 cut(s) 11, 23, 26, 158, 191, 216
AjnI CCWGG 5 cut(s) 34, 169, 178, 187, 199
AoxI GGCC 5 cut(s) 38, 47, 164, 181, 194
ApaI GGGCCC 1 cut(s) 198
ApeKI GCWGC 2 cut(s) 57, 120
ApoI RAATTY 1 cut(s) 81
AsuC2I CCSGG 2 cut(s) 6, 24
AvaII GGWCC 5 cut(s) 14, 29, 149, 173, 203
BaeGI GKGCMC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 44, 107
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 5 cut(s) 36, 171, 180, 189, 201
BcnI CCSGG 2 cut(s) 6, 24
BfaI CTAG 1 cut(s) 134
BglI GCCNNNNNGGC 2 cut(s) 46, 189
BisI GCNGC 3 cut(s) 20, 58, 121
BlsI GCNGC 3 cut(s) 21, 59, 122
Bme1390I CCNGG 7 cut(s) 6, 24, 36, 171, 180, 189, 201
Bme18I GGWCC 5 cut(s) 14, 29, 149, 173, 203
BmiI GGNNCC 4 cut(s) 15, 175, 196, 197
BmrFI CCNGG 7 cut(s) 6, 24, 36, 171, 180, 189, 201
BmsI GCATC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 6, 24
BsaJI CCNNGG 4 cut(s) 35, 178, 199, 215
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 23, 26, 158, 191, 216
Bse118I RCCGGY 1 cut(s) 40
BseBI CCWGG 5 cut(s) 36, 171, 180, 189, 201
BseDI CCNNGG 4 cut(s) 35, 178, 199, 215
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 6 cut(s) 11, 23, 26, 158, 191, 216
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 2 cut(s) 44, 107
BshFI GGCC 5 cut(s) 40, 49, 166, 183, 196
BsiSI CCGG 3 cut(s) 5, 23, 41
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 6 cut(s) 11, 23, 26, 158, 191, 216
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 5 cut(s) 40, 49, 166, 183, 196
Bsp120I GGGCCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 198
BspACI CCGC 4 cut(s) 17, 20, 192, 212
BspANI GGCC 5 cut(s) 40, 49, 166, 183, 196
BspLI GGNNCC 4 cut(s) 15, 175, 196, 197
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 4 cut(s) 35, 178, 199, 215
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 5 cut(s) 36, 171, 180, 189, 201
BstC8I GCNNGC 2 cut(s) 42, 194
BstF5I GGATG 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 46, 126, 189
BstNI CCWGG 5 cut(s) 36, 171, 180, 189, 201
BstSCI CCNGG 7 cut(s) 4, 22, 34, 169, 178, 187, 199
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 44, 107
BsuRI GGCC 5 cut(s) 40, 49, 166, 183, 196
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 42, 194
Cfr10I RCCGGY 1 cut(s) 40
CviAII CATG 2 cut(s) 51, 102
CviJI RGCY 7 cut(s) 40, 49, 57, 91, 166, 183, 196
CviKI_1 RGCY 7 cut(s) 40, 49, 57, 91, 166, 183, 196
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 5 cut(s) 14, 29, 149, 173, 203
EcoO109I RGGNCCY 2 cut(s) 29, 195
EcoRII CCWGG 5 cut(s) 34, 169, 178, 187, 199
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 54, 105
FaiI YATR 3 cut(s) 52, 103, 155
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 50, 101
FauI CCCGC 2 cut(s) 185, 219
Fnu4HI GCNGC 3 cut(s) 20, 58, 121
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 20, 58, 121
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 20, 58, 121
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 5 cut(s) 40, 49, 166, 183, 196
HapII CCGG 3 cut(s) 5, 23, 41
Hin1II CATG 2 cut(s) 54, 105
HpaII CCGG 3 cut(s) 5, 23, 41
Hpy166II GTNNAC 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 126, 189
Hsp92II CATG 2 cut(s) 54, 105
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 44, 107
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 134
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 81
MnlI CCTC 3 cut(s) 20, 42, 216
MroNI GCCGGC 1 cut(s) 40
MspI CCGG 3 cut(s) 5, 23, 41
MspR9I CCNGG 7 cut(s) 6, 24, 36, 171, 180, 189, 201
MvaI CCWGG 5 cut(s) 36, 171, 180, 189, 201
MwoI GCNNNNNNNGC 3 cut(s) 46, 126, 189
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 2 cut(s) 6, 24
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 54, 105
NlaIV GGNNCC 4 cut(s) 15, 175, 196, 197
PdiI GCCGGC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 21, 59, 122
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 5 cut(s) 34, 169, 178, 187, 199
PspGI CCWGG 5 cut(s) 34, 169, 178, 187, 199
PspN4I GGNNCC 4 cut(s) 15, 175, 196, 197
PspOMI GGGCCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 29
SatI GCNGC 3 cut(s) 20, 58, 121
ScrFI CCNGG 7 cut(s) 6, 24, 36, 171, 180, 189, 201
SduI GDGCHC 1 cut(s) 198
SetI ASST 5 cut(s) 34, 154, 172, 190, 208
SfaNI GCATC 1 cut(s) 138
SfiI GGCCNNNNNGGCC 1 cut(s) 46
SinI GGWCC 5 cut(s) 14, 29, 149, 173, 203
Sse9I AATT 1 cut(s) 81
SsiI CCGC 4 cut(s) 17, 20, 192, 212
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 7 cut(s) 4, 22, 34, 169, 178, 187, 199
StyI CCWWGG 1 cut(s) 215
TasI AATT 1 cut(s) 81
TauI GCSGC 1 cut(s) 22
TseI GCWGC 2 cut(s) 57, 120
TspDTI ATGAA 1 cut(s) 90
VpaK11BI GGWCC 5 cut(s) 14, 29, 149, 173, 203
XapI RAATTY 1 cut(s) 81
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.