Prupe.6G358200_v2.0.a1

At4g13230-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
30333108 .. 30333967
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G358200.1

Sequence Viewer

Length: 396 bp
ATGGCAAACCTAACTCTTTTTACCAGCCTCTTGAAATTTGGCCATGTTGCAAGGAACGCCGCTTCAACAACTCCTAGGATTTTTTTGGCTACTGCCCCAAGACGTATTCAAGCAAGTTCATCACAGCAAGACGCAGCTTCAGTAGCCAATGAAGCTAGGAATGCTGCTGAAAATGTAACCCAGACGACCAAAGACATGGCTGGCAAGGTGTCTGCAACAGCACAAGATGTGTCTGAGAAAGCAAAGCAGACAGCGCAAGACGCATGGAGCCAAGCTAAGGGCACAGCCCAGAAGGCCGCAGACACGGTAGTGGGCAAGACCGAAGAATCGAAAGAGTTCGTTAAAGAGAACGCAGAGCAGGTCAAGAAGAGCATGAATACCAAGAACAAGAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.0

Weight (kDa)

9.74

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024412)

Species Orthologous Gene IDs
malus_domestica MD04G1240600.v1.1 MD12G1257600.v1.1
prunus_persica Prupe.6G358200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AciI CCGC 2 cut(s) 60, 297
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 34, 66, 110
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 3 cut(s) 137, 155, 275
AluI AGCT 3 cut(s) 137, 155, 275
AoxI GGCC 2 cut(s) 40, 294
ApeKI GCWGC 2 cut(s) 134, 164
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 42
BbvI GCAGC 2 cut(s) 146, 151
BfaI CTAG 2 cut(s) 75, 156
BfuAI ACCTGC 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 4 cut(s) 60, 135, 165, 297
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 4 cut(s) 61, 136, 166, 298
BmiI GGNNCC 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 146, 151
BshFI GGCC 2 cut(s) 42, 296
BslI CCNNNNNNNGG 1 cut(s) 277
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 2 cut(s) 42, 296
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 2 cut(s) 60, 297
BspANI GGCC 2 cut(s) 42, 296
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 234, 276
BstHHI GCGC 1 cut(s) 256
BstMWI GCNNNNNNNGC 7 cut(s) 56, 143, 152, 161, 253, 260, 293
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 146, 151
BstXI CCANNNNNNTGG 1 cut(s) 196
BsuRI GGCC 2 cut(s) 42, 296
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 256
CseI GACGC 2 cut(s) 140, 269
CviAII CATG 4 cut(s) 44, 196, 264, 373
DdeI CTNAG 2 cut(s) 234, 276
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 4 cut(s) 47, 199, 267, 376
FaiI YATR 4 cut(s) 45, 197, 265, 374
FatI CATG 4 cut(s) 43, 195, 263, 372
Fnu4HI GCNGC 4 cut(s) 60, 135, 165, 297
Fsp4HI GCNGC 4 cut(s) 60, 135, 165, 297
FspBI CTAG 2 cut(s) 75, 156
GlaI GCGC 1 cut(s) 255
GluI GCNGC 4 cut(s) 60, 135, 165, 297
HaeIII GGCC 2 cut(s) 42, 296
HgaI GACGC 2 cut(s) 140, 269
HhaI GCGC 1 cut(s) 256
Hin1II CATG 4 cut(s) 47, 199, 267, 376
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 31, 364
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 50, 215
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 143, 152, 161, 253, 260, 293
HpyF3I CTNAG 2 cut(s) 234, 276
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 47, 199, 267, 376
HspAI GCGC 1 cut(s) 254
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 5 cut(s) 37, 186, 194, 302, 344
Lsp1109I GCAGC 2 cut(s) 146, 151
MaeI CTAG 2 cut(s) 75, 156
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 2 cut(s) 335, 379
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 335
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 7 cut(s) 56, 143, 152, 161, 253, 260, 293
NlaIII CATG 4 cut(s) 47, 199, 267, 376
NlaIV GGNNCC 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 362
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 4 cut(s) 61, 136, 166, 298
PspN4I GGNNCC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 4 cut(s) 60, 135, 165, 297
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 12, 106, 139, 157, 210, 277, 363
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 35
SsiI CCGC 2 cut(s) 60, 297
SspMI CTAG 2 cut(s) 75, 156
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 329
TaqII GACCGA 1 cut(s) 335
TasI AATT 1 cut(s) 35
TauI GCSGC 2 cut(s) 62, 299
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 2 cut(s) 134, 164
TspDTI ATGAA 3 cut(s) 108, 165, 389
XapI RAATTY 1 cut(s) 35
XmaJI CCTAGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 2 cut(s) 75, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.