Prupe.7G060000_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0024572
Physical Location & Seq
Reverse (-)
9899902 .. 9901514
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G060000.1

Sequence Viewer

Length: 387 bp
ATGGGCTTGAAGTCACCAGCAAGTGAGACGGCAGAGTTCGTGTCTGTATTCCGTTCAGGAAGCTGTTCTGAGAAAGGCCCTAAACAATACATGGAGGATGAGTATATTTGTGTAGATGATCTTCATGAACATCTTGGTCAAATGGAAAACTTGCCTTCTCCTGGGGCATTTTATGGGGTCTTTGACGGACACAATGGTGTTGATGCAGCATCGTTTATTAAAAAAAACATCCTTAGATTCATTGTTGAAGACTCTCACTTCCCATCAGGCATTAGAAAGGCAGTTAGGAGCGCCTTTGTGAAGGCTGATCATGCATTTGCAGATGCTAGCTCTGTTGATAAGTCCTCTGGTACCACTGCTTTGACTGCCCTTATTTTAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

129

Amino Acids

13.82

Weight (kDa)

5.67

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024572)

Species Orthologous Gene IDs
prunus_persica Prupe.7G060000_v2.0.a1
rosa_multiflora Rmu_sc0035013.1_g000001 Rmu_sc0035014.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 10, 248
AjnI CCWGG 1 cut(s) 160
AleI CACNNNNGTG 1 cut(s) 195
AluBI AGCT 2 cut(s) 63, 330
AluI AGCT 2 cut(s) 63, 330
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 6
AsuNHI GCTAGC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 193, 218, 313
BmtI GCTAGC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 103, 228
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 118, 307
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 2 cut(s) 118, 307
Bst2UI CCWGG 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 69, 233
BstF5I GGATG 2 cut(s) 103, 228
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 121, 310
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 2 cut(s) 118, 307
BstMWI GCNNNNNNNGC 2 cut(s) 311, 365
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 103, 228
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 328
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 351
CviAII CATG 3 cut(s) 91, 125, 311
CviJI RGCY 5 cut(s) 6, 63, 78, 305, 330
CviKI_1 RGCY 5 cut(s) 6, 63, 78, 305, 330
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 69, 233
DpnI GATC 2 cut(s) 120, 309
DpnII GATC 2 cut(s) 118, 307
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 3 cut(s) 94, 128, 314
FaiI YATR 5 cut(s) 92, 105, 126, 174, 312
FatI CATG 3 cut(s) 90, 124, 310
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 110, 215
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 78
HhaI GCGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 94, 128, 314
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 2 cut(s) 237, 251
HphI GGTGA 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 57, 125
HpyAV CCTTC 2 cut(s) 165, 295
HpyCH4V TGCA 3 cut(s) 206, 314, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 365
HpyF3I CTNAG 2 cut(s) 69, 233
Hsp92II CATG 3 cut(s) 94, 128, 314
HspAI GCGC 1 cut(s) 291
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 118, 307
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 6 cut(s) 30, 42, 147, 174, 252, 333
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 3 cut(s) 193, 218, 313
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 120, 309
MboI GATC 2 cut(s) 118, 307
MboII GAAGA 2 cut(s) 113, 260
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 2 cut(s) 88, 355
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 311, 365
NdeII GATC 2 cut(s) 118, 307
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 94, 128, 314
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 195
PagI TCATGA 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 118, 307
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 162
SetI ASST 2 cut(s) 65, 332
SfaNI GCATC 3 cut(s) 193, 218, 313
SmiMI CAYNNNNRTG 1 cut(s) 195
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 160
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 113, 141, 229
TspGWI ACGGA 2 cut(s) 41, 201
TspRI CASTG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.