Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035013.1

Orthogroup ID

OG0024572

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 351

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035013.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

atttgttaatatagatgcatttgaacaggtatttgatggccacggaggcacagatgcagcatcgtttatcagaagcaacattcttagattcatagttgaggattctcattttccaacttgtttggagagggctattaagagtgcctacgtgaaagctgatcatgcatttgcagatgcaagttctctggatatctcctctggcaccactgctctgactgcccttgtttcgggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061392 GO:0061416 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097305 GO:0104004 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

78

Amino Acids

8.35

Weight (kDa)

5.03

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024572)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G060000_v2.0.a1
rosa_multiflora	Rmu_sc0035013.1_g000001 Rmu_sc0035014.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	24
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	203
BmsI	GCATC	4 cut(s)	5, 44, 69, 164
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 162, 216
BstV1I	GCAGC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	3 cut(s)	40, 132, 156
CviKI_1	RGCY	3 cut(s)	40, 132, 156
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	191
EcoT22I	ATGCAT	2 cut(s)	20, 167
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	12, 93, 163
FatI	CATG	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	2 cut(s)	88, 102
Hpy188I	TCNGA	2 cut(s)	72, 214
Hpy188III	TCNNGA	2 cut(s)	186, 229
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	18, 57, 165, 171, 177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 162, 216
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	158
LpnPI	CCDG	3 cut(s)	12, 171, 184
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	4 cut(s)	5, 44, 69, 164
MaeII	ACGT	1 cut(s)	148
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	40
MluNI	TGGCCA	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	39, 92, 121, 206
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	2 cut(s)	20, 167
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	2 cut(s)	7, 136
Msp20I	TGGCCA	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	46, 162, 216
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	203
NsiI	ATGCAT	2 cut(s)	20, 167
PfeI	GAWTC	2 cut(s)	88, 102
PkrI	GCNGC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	7, 136
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	158
SetI	ASST	4 cut(s)	31, 151, 158, 237
SfaNI	GCATC	4 cut(s)	5, 44, 69, 164
SgeI	CNNG	9 cut(s)	39, 54, 130, 161, 174, 190, 198, 211, 234
TaiI	ACGT	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	88, 102
Tru1I	TTAA	2 cut(s)	7, 136
Tru9I	TTAA	2 cut(s)	7, 136
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	212
Zsp2I	ATGCAT	2 cut(s)	20, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.