Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035014.1

Orthogroup ID

OG0024572

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 351

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

gtatttgatggccacggtggcacagatgcagcatcgtttatcagaagcaacattcttagattcatagttgaggattctcattttccaacttgtttggagagggctattaagagtgcctacgtgaaagctgatcatgcatttgcagatgcaagttctctggatatctcctctggcaccactgctctgactgcccttgtttcaggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061392 GO:0061416 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097305 GO:0104004 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

69

Amino Acids

7.29

Weight (kDa)

5.79

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024572)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G060000_v2.0.a1
rosa_multiflora	Rmu_sc0035013.1_g000001 Rmu_sc0035014.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	10
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	2
BclI	TGATCA	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	3 cut(s)	16, 41, 136
BsaAI	YACGTR	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 134, 188
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	12, 104, 128
CviKI_1	RGCY	3 cut(s)	12, 104, 128
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	65, 135
FatI	CATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	2 cut(s)	60, 74
Hpy188I	TCNGA	2 cut(s)	44, 186
Hpy188III	TCNNGA	2 cut(s)	158, 201
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	29, 137, 143, 149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 134, 188
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	143, 156, 186
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	16, 41, 136
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	64, 93, 178
Mox20I	TGGCCA	1 cut(s)	12
Mph1103I	ATGCAT	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	18, 134, 188
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	60, 74
PkrI	GCNGC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	3 cut(s)	123, 130, 209
SfaNI	GCATC	3 cut(s)	16, 41, 136
SgeI	CNNG	8 cut(s)	26, 102, 133, 146, 162, 170, 183, 206
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	60, 74
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	184
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.