Cytochrome p450
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52970 AT3G52970 |
| fragaria_vesca | FvH4_6g17540 FvH4_6g17540 |
| malus_domestica | MD14G1093800.v1.1 |
| prunus_persica | Prupe.7G120200_v2.0.a1 |
| pyrus_communis | pycom14g09130 pycom14g09150 |
| rosa_chinensis | RchiOBHm_Chr3g0471791 |
| rosa_laevigata | RLG00000024134 |
| rosa_multiflora | Rmu_sc0019096.1_g000001 Rmu_sc0019097.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00409550 |
| rosa_rugosa | Rorug03G0119900 |
| rosa_samantha | Rh3DG178100 |
| rosa_wichuraiana | Rw3G016920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 956, 1494 |
| AarI | CACCTGC | 1 cut(s) | 935 |
| AatII | GACGTC | 1 cut(s) | 253 |
| Acc36I | ACCTGC | 2 cut(s) | 83, 935 |
| AccB1I | GGYRCC | 3 cut(s) | 273, 1365, 1382 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 466, 1393 |
| AciI | CCGC | 1 cut(s) | 338 |
| AclWI | GGATC | 3 cut(s) | 396, 409, 1676 |
| AcoI | YGGCCR | 2 cut(s) | 1338, 1531 |
| AcsI | RAATTY | 3 cut(s) | 108, 587, 1389 |
| AcyI | GRCGYC | 1 cut(s) | 250 |
| AdeI | CACNNNGTG | 1 cut(s) | 466 |
| AfaI | GTAC | 5 cut(s) | 627, 688, 1029, 1572, 1689 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 308, 466, 546, 787, 1336, 1393, 1718 |
| AgsI | TTSAA | 7 cut(s) | 454, 938, 1083, 1202, 1259, 1453, 1696 |
| AhlI | ACTAGT | 1 cut(s) | 1558 |
| AjiI | CACGTC | 2 cut(s) | 1418, 1431 |
| AjnI | CCWGG | 1 cut(s) | 1323 |
| AleI | CACNNNNGTG | 2 cut(s) | 416, 1150 |
| AluBI | AGCT | 4 cut(s) | 96, 1168, 1210, 1240 |
| AluI | AGCT | 4 cut(s) | 96, 1168, 1210, 1240 |
| Alw21I | GWGCWC | 4 cut(s) | 165, 413, 581, 1145 |
| Alw26I | GTCTC | 2 cut(s) | 113, 1567 |
| Alw44I | GTGCAC | 1 cut(s) | 577 |
| AlwI | GGATC | 3 cut(s) | 396, 409, 1676 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1127 |
| Ama87I | CYCGRG | 1 cut(s) | 284 |
| ApaI | GGGCCC | 1 cut(s) | 338 |
| ApaLI | GTGCAC | 1 cut(s) | 577 |
| ApeKI | GCWGC | 2 cut(s) | 671, 1501 |
| ApoI | RAATTY | 3 cut(s) | 108, 587, 1389 |
| AspLEI | GCGC | 2 cut(s) | 561, 573 |
| AsuC2I | CCSGG | 2 cut(s) | 285, 286 |
| AsuHPI | GGTGA | 3 cut(s) | 518, 959, 1058 |
| AvaI | CYCGRG | 1 cut(s) | 284 |
| AvaII | GGWCC | 5 cut(s) | 469, 769, 778, 1327, 1438 |
| AxyI | CCTNAGG | 1 cut(s) | 1298 |
| BaeGI | GKGCMC | 5 cut(s) | 276, 338, 581, 1368, 1547 |
| BalI | TGGCCA | 1 cut(s) | 1340 |
| BamHI | GGATCC | 1 cut(s) | 401 |
| BanI | GGYRCC | 3 cut(s) | 273, 1365, 1382 |
| BanII | GRGCYC | 3 cut(s) | 338, 1065, 1476 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 225, 257 |
| BauI | CACGAG | 1 cut(s) | 1138 |
| Bbv12I | GWGCWC | 4 cut(s) | 165, 413, 581, 1145 |
| BbvI | GCAGC | 2 cut(s) | 658, 1513 |
| BccI | CCATC | 7 cut(s) | 288, 638, 692, 724, 989, 1043, 1657 |
| BceAI | ACGGC | 3 cut(s) | 391, 552, 1518 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 1 cut(s) | 1325 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcnI | CCSGG | 2 cut(s) | 285, 286 |
| BcoDI | GTCTC | 2 cut(s) | 113, 1567 |
| BcuI | ACTAGT | 1 cut(s) | 1558 |
| BfaI | CTAG | 8 cut(s) | 398, 473, 1068, 1148, 1361, 1559, 1566, 1586 |
| BfmI | CTRYAG | 1 cut(s) | 1119 |
| BfoI | RGCGCY | 1 cut(s) | 574 |
| BfuAI | ACCTGC | 2 cut(s) | 83, 935 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 362, 556 |
| BisI | GCNGC | 2 cut(s) | 672, 1502 |
| BlsI | GCNGC | 2 cut(s) | 673, 1503 |
| Bme1390I | CCNGG | 3 cut(s) | 285, 286, 1325 |
| Bme18I | GGWCC | 5 cut(s) | 469, 769, 778, 1327, 1438 |
| BmeT110I | CYCGRG | 1 cut(s) | 284 |
| BmgBI | CACGTC | 2 cut(s) | 1418, 1431 |
| BmrFI | CCNGG | 3 cut(s) | 285, 286, 1325 |
| BmrI | ACTGGG | 1 cut(s) | 335 |
| BmsI | GCATC | 5 cut(s) | 601, 615, 658, 906, 1721 |
| BmuI | ACTGGG | 1 cut(s) | 335 |
| BpmI | CTGGAG | 1 cut(s) | 1213 |
| BpuEI | CTTGAG | 1 cut(s) | 1652 |
| BpuMI | CCSGG | 2 cut(s) | 285, 286 |
| Bsa29I | ATCGAT | 2 cut(s) | 609, 642 |
| BsaAI | YACGTR | 2 cut(s) | 29, 629 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1667 |
| BsaHI | GRCGYC | 1 cut(s) | 250 |
| BsaI | GGTCTC | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 5 cut(s) | 284, 373, 1042, 1341, 1717 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 80, 110 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 308, 466, 546, 787, 1336, 1393, 1718 |
| Bse118I | RCCGGY | 1 cut(s) | 476 |
| Bse1I | ACTGG | 1 cut(s) | 330 |
| Bse21I | CCTNAGG | 1 cut(s) | 1298 |
| Bse3DI | GCAATG | 1 cut(s) | 1164 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1667 |
| BseBI | CCWGG | 1 cut(s) | 1325 |
| BseCI | ATCGAT | 2 cut(s) | 609, 642 |
| BseDI | CCNNGG | 5 cut(s) | 284, 373, 1042, 1341, 1717 |
| BseGI | GGATG | 5 cut(s) | 673, 1515, 1545, 1668, 1736 |
| BseJI | GATNNNNATC | 1 cut(s) | 1667 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 308, 466, 546, 787, 1336, 1393, 1718 |
| BseMI | GCAATG | 1 cut(s) | 1164 |
| BseMII | CTCAG | 4 cut(s) | 57, 1312, 1449, 1647 |
| BseNI | ACTGG | 1 cut(s) | 330 |
| BseRI | GAGGAG | 2 cut(s) | 50, 275 |
| BseSI | GKGCMC | 5 cut(s) | 276, 338, 581, 1368, 1547 |
| BseXI | GCAGC | 2 cut(s) | 658, 1513 |
| BseYI | CCCAGC | 1 cut(s) | 839 |
| BsgI | GTGCAG | 1 cut(s) | 674 |
| Bsh1285I | CGRYCG | 1 cut(s) | 481 |
| BshNI | GGYRCC | 3 cut(s) | 273, 1365, 1382 |
| BshVI | ATCGAT | 2 cut(s) | 609, 642 |
| BsiEI | CGRYCG | 1 cut(s) | 481 |
| BsiHKAI | GWGCWC | 4 cut(s) | 165, 413, 581, 1145 |
| BsiHKCI | CYCGRG | 1 cut(s) | 284 |
| BsiSI | CCGG | 2 cut(s) | 285, 477 |
| BslFI | GGGAC | 1 cut(s) | 1313 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 308, 466, 546, 787, 1336, 1393, 1718 |
| BsmAI | GTCTC | 2 cut(s) | 113, 1567 |
| BsmFI | GGGAC | 1 cut(s) | 1313 |
| Bso31I | GGTCTC | 1 cut(s) | 113 |
| BsoBI | CYCGRG | 1 cut(s) | 284 |
| Bsp120I | GGGCCC | 1 cut(s) | 334 |
| Bsp143I | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| Bsp19I | CCATGG | 1 cut(s) | 1341 |
| BspACI | CCGC | 1 cut(s) | 338 |
| BspCNI | CTCAG | 4 cut(s) | 58, 1311, 1450, 1648 |
| BspDI | ATCGAT | 2 cut(s) | 609, 642 |
| BspHI | TCATGA | 1 cut(s) | 384 |
| BspMAI | CTGCAG | 1 cut(s) | 1123 |
| BspMI | ACCTGC | 2 cut(s) | 83, 935 |
| BspPI | GGATC | 3 cut(s) | 396, 409, 1676 |
| BspT107I | GGYRCC | 3 cut(s) | 273, 1365, 1382 |
| BspTNI | GGTCTC | 1 cut(s) | 113 |
| BsrDI | GCAATG | 1 cut(s) | 1164 |
| BsrFI | RCCGGY | 1 cut(s) | 476 |
| BsrI | ACTGG | 1 cut(s) | 330 |
| BssAI | RCCGGY | 1 cut(s) | 476 |
| BssECI | CCNNGG | 5 cut(s) | 284, 373, 1042, 1341, 1717 |
| BssMI | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| BssNI | GRCGYC | 1 cut(s) | 250 |
| BssSI | CACGAG | 1 cut(s) | 1138 |
| BssT1I | CCWWGG | 2 cut(s) | 1341, 1717 |
| Bst2BI | CACGAG | 1 cut(s) | 1138 |
| Bst2UI | CCWGG | 1 cut(s) | 1325 |
| Bst4CI | ACNGT | 3 cut(s) | 415, 1043, 1090 |
| Bst6I | CTCTTC | 1 cut(s) | 1081 |
| BstACI | GRCGYC | 1 cut(s) | 250 |
| BstBAI | YACGTR | 2 cut(s) | 29, 629 |
| BstC8I | GCNNGC | 3 cut(s) | 338, 363, 527 |
| BstDEI | CTNAG | 8 cut(s) | 66, 765, 1021, 1211, 1298, 1458, 1656, 1676 |
| BstDSI | CCRYGG | 3 cut(s) | 373, 1042, 1341 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1716 |
| BstF5I | GGATG | 5 cut(s) | 673, 1515, 1545, 1668, 1736 |
| BstH2I | RGCGCY | 1 cut(s) | 574 |
| BstHHI | GCGC | 2 cut(s) | 561, 573 |
| BstKTI | GATC | 4 cut(s) | 404, 423, 534, 1671 |
| BstMAI | GTCTC | 2 cut(s) | 113, 1567 |
| BstMBI | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| BstMCI | CGRYCG | 1 cut(s) | 481 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 362, 522, 556, 1453 |
| BstNI | CCWGG | 1 cut(s) | 1325 |
| BstNSI | RCATGY | 2 cut(s) | 565, 1727 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 3 cut(s) | 283, 284, 1323 |
| BstSFI | CTRYAG | 1 cut(s) | 1119 |
| BstSLI | GKGCMC | 5 cut(s) | 276, 338, 581, 1368, 1547 |
| BstV1I | GCAGC | 2 cut(s) | 658, 1513 |
| BstX2I | RGATCY | 1 cut(s) | 401 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 193, 297, 1431 |
| BstYI | RGATCY | 1 cut(s) | 401 |
| Bsu15I | ATCGAT | 2 cut(s) | 609, 642 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1298 |
| BsuTUI | ATCGAT | 2 cut(s) | 609, 642 |
| BtgI | CCRYGG | 3 cut(s) | 373, 1042, 1341 |
| BtrI | CACGTC | 2 cut(s) | 1418, 1431 |
| BtsCI | GGATG | 5 cut(s) | 673, 1515, 1545, 1668, 1736 |
| BtsI | GCAGTG | 1 cut(s) | 1116 |
| BtsIMutI | CAGTG | 1 cut(s) | 1116 |
| BveI | ACCTGC | 2 cut(s) | 83, 935 |
| Cac8I | GCNNGC | 3 cut(s) | 338, 363, 527 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1127 |
| CciI | TCATGA | 1 cut(s) | 384 |
| CfoI | GCGC | 2 cut(s) | 561, 573 |
| Cfr10I | RCCGGY | 1 cut(s) | 476 |
| Cfr9I | CCCGGG | 1 cut(s) | 284 |
| ClaI | ATCGAT | 2 cut(s) | 609, 642 |
| CseI | GACGC | 1 cut(s) | 663 |
| Csp6I | GTAC | 5 cut(s) | 626, 687, 1028, 1571, 1688 |
| CviQI | GTAC | 5 cut(s) | 626, 687, 1028, 1571, 1688 |
| DdeI | CTNAG | 8 cut(s) | 66, 765, 1021, 1211, 1298, 1458, 1656, 1676 |
| DpnI | GATC | 4 cut(s) | 403, 422, 533, 1670 |
| DpnII | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| DraIII | CACNNNGTG | 1 cut(s) | 466 |
| EaeI | YGGCCR | 2 cut(s) | 1338, 1531 |
| Eam1104I | CTCTTC | 1 cut(s) | 1081 |
| EarI | CTCTTC | 1 cut(s) | 1081 |
| Eco130I | CCWWGG | 2 cut(s) | 1341, 1717 |
| Eco147I | AGGCCT | 2 cut(s) | 57, 932 |
| Eco24I | GRGCYC | 3 cut(s) | 338, 1065, 1476 |
| Eco31I | GGTCTC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 5 cut(s) | 469, 769, 778, 1327, 1438 |
| Eco81I | CCTNAGG | 1 cut(s) | 1298 |
| Eco88I | CYCGRG | 1 cut(s) | 284 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1716 |
| EcoO109I | RGGNCCY | 2 cut(s) | 769, 1438 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 587 |
| EcoRII | CCWGG | 1 cut(s) | 1323 |
| EcoT14I | CCWWGG | 2 cut(s) | 1341, 1717 |
| EcoT38I | GRGCYC | 3 cut(s) | 338, 1065, 1476 |
| ErhI | CCWWGG | 2 cut(s) | 1341, 1717 |
| FaqI | GGGAC | 1 cut(s) | 1313 |
| FauI | CCCGC | 1 cut(s) | 345 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 2 cut(s) | 672, 1502 |
| FokI | GGATG | 4 cut(s) | 680, 1502, 1552, 1675 |
| FriOI | GRGCYC | 3 cut(s) | 338, 1065, 1476 |
| Fsp4HI | GCNGC | 2 cut(s) | 672, 1502 |
| FspBI | CTAG | 8 cut(s) | 398, 473, 1068, 1148, 1361, 1559, 1566, 1586 |
| GlaI | GCGC | 2 cut(s) | 560, 572 |
| GluI | GCNGC | 2 cut(s) | 672, 1502 |
| GsaI | CCCAGC | 1 cut(s) | 843 |
| GsuI | CTGGAG | 1 cut(s) | 1213 |
| HaeII | RGCGCY | 1 cut(s) | 574 |
| HapII | CCGG | 2 cut(s) | 285, 477 |
| HgaI | GACGC | 1 cut(s) | 663 |
| HhaI | GCGC | 2 cut(s) | 561, 573 |
| Hin1I | GRCGYC | 1 cut(s) | 250 |
| Hin6I | GCGC | 2 cut(s) | 559, 571 |
| HinP1I | GCGC | 2 cut(s) | 559, 571 |
| HincII | GTYRAC | 1 cut(s) | 1399 |
| HindII | GTYRAC | 1 cut(s) | 1399 |
| HinfI | GANTC | 2 cut(s) | 347, 1346 |
| HpaII | CCGG | 2 cut(s) | 285, 477 |
| HphI | GGTGA | 3 cut(s) | 518, 959, 1058 |
| Hpy166II | GTNNAC | 4 cut(s) | 579, 626, 1116, 1399 |
| Hpy188I | TCNGA | 4 cut(s) | 679, 744, 790, 1539 |
| Hpy188III | TCNNGA | 5 cut(s) | 385, 595, 727, 901, 1083 |
| Hpy8I | GTNNAC | 4 cut(s) | 579, 626, 1116, 1399 |
| Hpy99I | CGWCG | 6 cut(s) | 249, 252, 255, 430, 679, 1539 |
| HpyAV | CCTTC | 7 cut(s) | 248, 496, 515, 1325, 1330, 1619, 1690 |
| HpyCH4III | ACNGT | 3 cut(s) | 415, 1043, 1090 |
| HpyCH4IV | ACGT | 8 cut(s) | 28, 250, 628, 1026, 1401, 1417, 1430, 1485 |
| HpyCH4V | TGCA | 8 cut(s) | 78, 212, 579, 655, 818, 944, 1121, 1600 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 362, 522, 556, 1453 |
| HpyF3I | CTNAG | 8 cut(s) | 66, 765, 1021, 1211, 1298, 1458, 1656, 1676 |
| HpySE526I | ACGT | 8 cut(s) | 28, 250, 628, 1026, 1401, 1417, 1430, 1485 |
| Hsp92I | GRCGYC | 1 cut(s) | 250 |
| HspAI | GCGC | 2 cut(s) | 559, 571 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| LmnI | GCTCC | 5 cut(s) | 101, 160, 1245, 1308, 1471 |
| Lsp1109I | GCAGC | 2 cut(s) | 658, 1513 |
| LweI | GCATC | 5 cut(s) | 601, 615, 658, 906, 1721 |
| MaeI | CTAG | 8 cut(s) | 398, 473, 1068, 1148, 1361, 1559, 1566, 1586 |
| MaeII | ACGT | 8 cut(s) | 28, 250, 628, 1026, 1401, 1417, 1430, 1485 |
| MaeIII | GTNAC | 5 cut(s) | 24, 232, 595, 1418, 1590 |
| MalI | GATC | 4 cut(s) | 403, 422, 533, 1670 |
| MboI | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| MboII | GAAGA | 5 cut(s) | 233, 310, 583, 1068, 1071 |
| MflI | RGATCY | 1 cut(s) | 401 |
| MlsI | TGGCCA | 1 cut(s) | 1340 |
| MluCI | AATT | 6 cut(s) | 108, 587, 870, 914, 939, 1389 |
| MluNI | TGGCCA | 1 cut(s) | 1340 |
| MlyI | GAGTC | 1 cut(s) | 1340 |
| MmeI | TCCRAC | 3 cut(s) | 346, 657, 1517 |
| Mox20I | TGGCCA | 1 cut(s) | 1340 |
| MscI | TGGCCA | 1 cut(s) | 1340 |
| MseI | TTAA | 3 cut(s) | 566, 738, 1275 |
| MslI | CAYNNNNRTG | 5 cut(s) | 155, 191, 416, 1150, 1340 |
| Msp20I | TGGCCA | 1 cut(s) | 1340 |
| MspI | CCGG | 2 cut(s) | 285, 477 |
| MspR9I | CCNGG | 3 cut(s) | 285, 286, 1325 |
| MvaI | CCWGG | 1 cut(s) | 1325 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 362, 522, 556, 1453 |
| NciI | CCSGG | 2 cut(s) | 285, 286 |
| NcoI | CCATGG | 1 cut(s) | 1341 |
| NdeII | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| NmeAIII | GCCGAG | 1 cut(s) | 1231 |
| NmuCI | GTSAC | 4 cut(s) | 24, 595, 1418, 1590 |
| NspI | RCATGY | 2 cut(s) | 565, 1727 |
| OliI | CACNNNNGTG | 2 cut(s) | 416, 1150 |
| PagI | TCATGA | 1 cut(s) | 384 |
| PaqCI | CACCTGC | 1 cut(s) | 935 |
| PceI | AGGCCT | 2 cut(s) | 57, 932 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 250 |
| PfeI | GAWTC | 1 cut(s) | 347 |
| PflFI | GACNNNGTC | 1 cut(s) | 249 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 466, 1393 |
| PkrI | GCNGC | 2 cut(s) | 673, 1503 |
| PleI | GAGTC | 1 cut(s) | 1340 |
| PpsI | GAGTC | 1 cut(s) | 1340 |
| Ppu21I | YACGTR | 2 cut(s) | 29, 629 |
| PpuMI | RGGWCCY | 2 cut(s) | 769, 1438 |
| PsiI | TTATAA | 2 cut(s) | 956, 1494 |
| Psp5II | RGGWCCY | 2 cut(s) | 769, 1438 |
| Psp6I | CCWGG | 1 cut(s) | 1323 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspFI | CCCAGC | 1 cut(s) | 839 |
| PspGI | CCWGG | 1 cut(s) | 1323 |
| PspOMI | GGGCCC | 1 cut(s) | 334 |
| PspPPI | RGGWCCY | 2 cut(s) | 769, 1438 |
| PstI | CTGCAG | 1 cut(s) | 1123 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1127 |
| PsuI | RGATCY | 1 cut(s) | 401 |
| PsyI | GACNNNGTC | 1 cut(s) | 249 |
| RsaI | GTAC | 5 cut(s) | 627, 688, 1029, 1572, 1689 |
| RsaNI | GTAC | 5 cut(s) | 626, 687, 1028, 1571, 1688 |
| RseI | CAYNNNNRTG | 5 cut(s) | 155, 191, 416, 1150, 1340 |
| SaqAI | TTAA | 3 cut(s) | 566, 738, 1275 |
| SatI | GCNGC | 2 cut(s) | 672, 1502 |
| Sau3AI | GATC | 4 cut(s) | 401, 420, 531, 1668 |
| SchI | GAGTC | 1 cut(s) | 1340 |
| ScrFI | CCNGG | 3 cut(s) | 285, 286, 1325 |
| SfaNI | GCATC | 5 cut(s) | 601, 615, 658, 906, 1721 |
| SfcI | CTRYAG | 1 cut(s) | 1119 |
| SinI | GGWCC | 5 cut(s) | 469, 769, 778, 1327, 1438 |
| SmaI | CCCGGG | 1 cut(s) | 286 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 155, 191, 416, 1150, 1340 |
| SmlI | CTYRAG | 1 cut(s) | 1631 |
| SmoI | CTYRAG | 1 cut(s) | 1631 |
| SpeI | ACTAGT | 1 cut(s) | 1558 |
| Sse9I | AATT | 6 cut(s) | 108, 587, 870, 914, 939, 1389 |
| SseBI | AGGCCT | 2 cut(s) | 57, 932 |
| SsiI | CCGC | 1 cut(s) | 338 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 8 cut(s) | 398, 473, 1068, 1148, 1361, 1559, 1566, 1586 |
| StuI | AGGCCT | 2 cut(s) | 57, 932 |
| StyD4I | CCNGG | 3 cut(s) | 283, 284, 1323 |
| StyI | CCWWGG | 2 cut(s) | 1341, 1717 |
| TaaI | ACNGT | 3 cut(s) | 415, 1043, 1090 |
| TaiI | ACGT | 8 cut(s) | 31, 253, 631, 1029, 1404, 1420, 1433, 1488 |
| TaqI | TCGA | 5 cut(s) | 244, 428, 481, 609, 642 |
| TasI | AATT | 6 cut(s) | 108, 587, 870, 914, 939, 1389 |
| TfiI | GAWTC | 1 cut(s) | 347 |
| Tru1I | TTAA | 3 cut(s) | 566, 738, 1275 |
| Tru9I | TTAA | 3 cut(s) | 566, 738, 1275 |
| TscAI | CASTG | 1 cut(s) | 1123 |
| TseFI | GTSAC | 4 cut(s) | 24, 595, 1418, 1590 |
| TseI | GCWGC | 2 cut(s) | 671, 1501 |
| Tsp45I | GTSAC | 4 cut(s) | 24, 595, 1418, 1590 |
| TspDTI | ATGAA | 4 cut(s) | 515, 649, 709, 1504 |
| TspMI | CCCGGG | 1 cut(s) | 284 |
| TspRI | CASTG | 1 cut(s) | 1123 |
| Tth111I | GACNNNGTC | 1 cut(s) | 249 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 466, 1393 |
| VneI | GTGCAC | 1 cut(s) | 577 |
| VpaK11BI | GGWCC | 5 cut(s) | 469, 769, 778, 1327, 1438 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1716 |
| XapI | RAATTY | 3 cut(s) | 108, 587, 1389 |
| XceI | RCATGY | 2 cut(s) | 565, 1727 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 876 |
| XmaI | CCCGGG | 1 cut(s) | 284 |
| XspI | CTAG | 8 cut(s) | 398, 473, 1068, 1148, 1361, 1559, 1566, 1586 |
| ZraI | GACGTC | 1 cut(s) | 251 |