pycom14g09150

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015413
Physical Location & Seq
Reverse (-)
10761548 .. 10762990
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g09150.2

Sequence Viewer

Length: 1200 bp
ATGTGCGGTGTTCGTAAAAAGTGTATCGATGGAATGCTCCAATTCATAATGGACGCCTCTAGTAGGACGTCGTCAGAAATTAGTGCCAGTACTGATGGCATTGATCTGGGCAGGTTCATATTCTTGATGGCCTTTAATCTGATCGGGAACCTCATCTTTTCCAAAGATCTATTGGACCCAAAGTCGGAGAGAGGGGCTATGTTTTTTTACCATGCAGGTAAAGTTATGGAGTTGGCTGGGAAACCTAATATGGCAGATTTCTTTCCAATTTTGCGGTGGCTTGACCCGCAAGGCATTAGGAGAAACACCCAATTCCACGTGGAAAAGGCCTTTGAAATTGCAGGTGAGTTTATCAAAGAAAGAATGGAAAGCACGGAGAATGGTGGATGTGATGGCATAGAGAAAGCGAAGGACTTTTTGGATGTGCTTTTGGAGTACCGTGGTGATGGAGTTGATGAGGCCTCTGGGTTCACTTCTCCAAGAACCATCAACGTCATTGTCTTTGATGATTCCAATTCTGAATCTCTTATTTTGAGGCTCAATTTCTGTGAAAATAATTTGATATTATTTCAGGAGATGTTCACTGCTGGAACTGACACAACTACAAGCACCTTAGAGTGGGCAATGGCTGAGCTTCTAACCAGCCCCAAAGCCCTAAAGAAAGCTCAAGCCGAGCTAAGAAGCACCATATCTCCAGGCAACAAGCTTCAAGAGAAAGACATTGAAAATCTCCCATACCTCAAAGCAGTCATCAAAGAAACCCTAAGACTCCACCCACCTCTCCCTTTCTTAGTTCCACACATGGCCATGGAGTCCTGCAAAATGCTAGGGCACCACATTCCGAAAGACACTCAAATTCTAGTGAATGCTTGGGCCATTGGACGTGACCCAAAGACATGGGAAGACCCTTTGCTTTACAAGCCGGAGAGGTTCTTGAAGCCCGACATGGTCGATTATAAAGGACACAATTTTGAGTTCATACCGTTTGGTTCTGGTCGTCGGATATGCCCTGCAGTGCCACTAGTCTCTAGGGTACTCCCTTTGGCTCTAGGGTCGCTCTTACACTCGTTTGATTGGGTTTTGCCGAGCGGGCTTAAACCAGAGAACATTGATATGACTGAAAGGATGGGAATAACACTGAGAAAATCTGTCCCTTTGAAGGTTATACCTATACCTTACAATGGGCATGTGGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

400

Amino Acids

44.89

Weight (kDa)

6.04

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52970 AT3G52970
fragaria_vesca FvH4_6g17540 FvH4_6g17540
malus_domestica MD14G1093800.v1.1
prunus_persica Prupe.7G120200_v2.0.a1
pyrus_communis pycom14g09130 pycom14g09150
rosa_chinensis RchiOBHm_Chr3g0471791
rosa_laevigata RLG00000024134
rosa_multiflora Rmu_sc0019096.1_g000001 Rmu_sc0019097.1_g000001
rosa_roxburghii Rroxscaffold_6G00409550
rosa_rugosa Rorug03G0119900
rosa_samantha Rh3DG178100
rosa_wichuraiana Rw3G016920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 957
AarI CACCTGC 1 cut(s) 332
AatII GACGTC 1 cut(s) 71
Acc36I ACCTGC 3 cut(s) 102, 206, 332
AccB1I GGYRCC 1 cut(s) 831
AccBSI CCGCTC 1 cut(s) 1089
AciI CCGC 4 cut(s) 6, 274, 287, 1089
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 855
AcvI CACGTG 1 cut(s) 319
AcyI GRCGYC 2 cut(s) 54, 68
AfaI GTAC 3 cut(s) 91, 437, 1035
AfiI CCNNNNNNNGG 5 cut(s) 63, 184, 618, 1159, 1181
AgsI TTSAA 5 cut(s) 335, 710, 725, 937, 1159
AhdI GACNNNNNGTC 1 cut(s) 181
AhlI ACTAGT 1 cut(s) 1021
AjiI CACGTC 1 cut(s) 884
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 634, 665, 676, 706
AluI AGCT 4 cut(s) 634, 665, 676, 706
Alw26I GTCTC 1 cut(s) 1030
AoxI GGCC 5 cut(s) 129, 327, 459, 804, 873
ApoI RAATTY 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 175, 873
AsuHPI GGTGA 2 cut(s) 356, 455
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 834
BalI TGGCCA 1 cut(s) 806
BanI GGYRCC 1 cut(s) 831
BbrPI CACGTG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 909
BccI CCATC 7 cut(s) 23, 89, 121, 386, 440, 494, 1120
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 1030
BcuI ACTAGT 1 cut(s) 1021
BfaI CTAG 6 cut(s) 60, 827, 860, 1022, 1029, 1049
BfmI CTRYAG 1 cut(s) 1011
BfuAI ACCTGC 3 cut(s) 102, 206, 332
BglI GCCNNNNNGGC 1 cut(s) 1090
BglII AGATCT 1 cut(s) 166
BlpI GCTNAGC 1 cut(s) 630
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 884
BmgT120I GGNCC 2 cut(s) 175, 873
BmiI GGNNCC 3 cut(s) 149, 177, 833
BmrFI CCNGG 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 909
BpmI CTGGAG 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 319
BsaHI GRCGYC 2 cut(s) 54, 68
BsaJI CCNNGG 2 cut(s) 439, 807
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 184, 618, 1159, 1181
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 439, 807
BseGI GGATG 3 cut(s) 392, 427, 1131
BseLI CCNNNNNNNGG 5 cut(s) 63, 184, 618, 1159, 1181
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 2 cut(s) 621, 1130
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 834
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 5 cut(s) 131, 329, 461, 806, 875
BshNI GGYRCC 1 cut(s) 831
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 1 cut(s) 1136
BslI CCNNNNNNNGG 5 cut(s) 63, 184, 618, 1159, 1181
BsmAI GTCTC 1 cut(s) 1030
BsmFI GGGAC 1 cut(s) 1136
BsmI GAATGC 2 cut(s) 39, 871
BsnI GGCC 5 cut(s) 131, 329, 461, 806, 875
Bsp1286I GDGCHC 1 cut(s) 834
Bsp143I GATC 3 cut(s) 103, 141, 166
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 4 cut(s) 6, 274, 287, 1089
BspANI GGCC 5 cut(s) 131, 329, 461, 806, 875
BspCNI CTCAG 2 cut(s) 622, 1131
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 149, 177, 833
BspMAI CTGCAG 1 cut(s) 1015
BspMI ACCTGC 3 cut(s) 102, 206, 332
BspT107I GGYRCC 1 cut(s) 831
BsrBI CCGCTC 1 cut(s) 1089
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 439, 807
BssMI GATC 3 cut(s) 103, 141, 166
BssNI GRCGYC 2 cut(s) 54, 68
BssT1I CCWWGG 1 cut(s) 807
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 2 cut(s) 440, 984
BstACI GRCGYC 2 cut(s) 54, 68
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 1091
BstDEI CTNAG 6 cut(s) 613, 630, 677, 764, 790, 1139
BstDSI CCRYGG 2 cut(s) 439, 807
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 392, 427, 1131
BstKTI GATC 3 cut(s) 106, 144, 169
BstMAI GTCTC 1 cut(s) 1030
BstMBI GATC 3 cut(s) 103, 141, 166
BstMWI GCNNNNNNNGC 3 cut(s) 286, 919, 1090
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 1190
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 1 cut(s) 834
BstV2I GAAGAC 1 cut(s) 909
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 897
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 5 cut(s) 131, 329, 461, 806, 875
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 439, 807
BtrI CACGTC 1 cut(s) 884
BtsCI GGATG 3 cut(s) 392, 427, 1131
BtsI GCAGTG 2 cut(s) 582, 1020
BtsIMutI CAGTG 3 cut(s) 582, 1020, 1136
BveI ACCTGC 3 cut(s) 102, 206, 332
Cac8I GCNNGC 1 cut(s) 1091
Cfr13I GGNCC 2 cut(s) 175, 873
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 62
Csp6I GTAC 3 cut(s) 90, 436, 1034
CviAII CATG 6 cut(s) 212, 802, 808, 897, 946, 1187
CviQI GTAC 3 cut(s) 90, 436, 1034
DdeI CTNAG 6 cut(s) 613, 630, 677, 764, 790, 1139
DpnI GATC 3 cut(s) 105, 143, 168
DpnII GATC 3 cut(s) 103, 141, 166
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 804
Eam1105I GACNNNNNGTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 807
Eco147I AGGCCT 2 cut(s) 329, 461
Eco47I GGWCC 1 cut(s) 175
Eco72I CACGTG 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 6 cut(s) 215, 805, 811, 900, 949, 1190
FaqI GGGAC 1 cut(s) 1136
FatI CATG 6 cut(s) 211, 801, 807, 896, 945, 1186
FauI CCCGC 2 cut(s) 294, 1082
FokI GGATG 3 cut(s) 399, 434, 1138
FspBI CTAG 6 cut(s) 60, 827, 860, 1022, 1029, 1049
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 5 cut(s) 131, 329, 461, 806, 875
HapII CCGG 1 cut(s) 923
HgaI GACGC 1 cut(s) 62
Hin1I GRCGYC 2 cut(s) 54, 68
Hin1II CATG 6 cut(s) 215, 805, 811, 900, 949, 1190
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 5 cut(s) 509, 521, 768, 812, 1194
HpaII CCGG 1 cut(s) 923
HphI GGTGA 2 cut(s) 356, 455
Hpy166II GTNNAC 2 cut(s) 471, 582
Hpy188I TCNGA 6 cut(s) 76, 141, 187, 520, 843, 1002
Hpy188III TCNNGA 5 cut(s) 124, 145, 572, 710, 934
Hpy8I GTNNAC 2 cut(s) 471, 582
Hpy99I CGWCG 2 cut(s) 73, 1002
HpyAV CCTTC 2 cut(s) 403, 1153
HpyCH4III ACNGT 2 cut(s) 440, 984
HpyCH4IV ACGT 4 cut(s) 68, 318, 492, 883
HpyCH4V TGCA 4 cut(s) 215, 341, 819, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 919, 1090
HpyF3I CTNAG 6 cut(s) 613, 630, 677, 764, 790, 1139
HpySE526I ACGT 4 cut(s) 68, 318, 492, 883
Hsp92I GRCGYC 2 cut(s) 54, 68
Hsp92II CATG 6 cut(s) 215, 805, 811, 900, 949, 1190
Kzo9I GATC 3 cut(s) 103, 141, 166
LmnI GCTCC 1 cut(s) 42
MaeI CTAG 6 cut(s) 60, 827, 860, 1022, 1029, 1049
MaeII ACGT 4 cut(s) 68, 318, 492, 883
MaeIII GTNAC 1 cut(s) 884
MalI GATC 3 cut(s) 105, 143, 168
MbiI CCGCTC 1 cut(s) 1089
MboI GATC 3 cut(s) 103, 141, 166
MboII GAAGA 1 cut(s) 914
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 834
MlsI TGGCCA 1 cut(s) 806
MluNI TGGCCA 1 cut(s) 806
MlyI GAGTC 2 cut(s) 762, 821
MmeI TCCRAC 2 cut(s) 165, 980
MnlI CCTC 9 cut(s) 67, 161, 185, 451, 472, 528, 749, 789, 921
Mox20I TGGCCA 1 cut(s) 806
MscI TGGCCA 1 cut(s) 806
MseI TTAA 2 cut(s) 135, 1095
MslI CAYNNNNRTG 2 cut(s) 806, 1112
Msp20I TGGCCA 1 cut(s) 806
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 39, 871
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 3 cut(s) 286, 919, 1090
NcoI CCATGG 1 cut(s) 807
NdeII GATC 3 cut(s) 103, 141, 166
NlaIII CATG 6 cut(s) 215, 805, 811, 900, 949, 1190
NlaIV GGNNCC 3 cut(s) 149, 177, 833
NmeAIII GCCGAG 2 cut(s) 697, 1110
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 1 cut(s) 1190
PaqCI CACCTGC 1 cut(s) 332
PceI AGGCCT 2 cut(s) 329, 461
PctI GAATGC 2 cut(s) 39, 871
PfeI GAWTC 3 cut(s) 509, 521, 1194
PflFI GACNNNGTC 2 cut(s) 70, 947
PleI GAGTC 2 cut(s) 762, 820
PmaCI CACGTG 1 cut(s) 319
PmlI CACGTG 1 cut(s) 319
PpsI GAGTC 2 cut(s) 762, 820
Ppu21I YACGTR 1 cut(s) 319
PsiI TTATAA 1 cut(s) 957
Psp6I CCWGG 1 cut(s) 694
PspCI CACGTG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 149, 177, 833
PspPI GGNCC 2 cut(s) 175, 873
PstI CTGCAG 1 cut(s) 1015
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 2 cut(s) 70, 947
RsaI GTAC 3 cut(s) 91, 437, 1035
RsaNI GTAC 3 cut(s) 90, 436, 1034
RseI CAYNNNNRTG 2 cut(s) 806, 1112
SaqAI TTAA 2 cut(s) 135, 1095
Sau3AI GATC 3 cut(s) 103, 141, 166
Sau96I GGNCC 2 cut(s) 175, 873
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 762, 821
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 1 cut(s) 834
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 806, 1112
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 1021
SseBI AGGCCT 2 cut(s) 329, 461
SsiI CCGC 4 cut(s) 6, 274, 287, 1089
SspMI CTAG 6 cut(s) 60, 827, 860, 1022, 1029, 1049
StuI AGGCCT 2 cut(s) 329, 461
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 2 cut(s) 440, 984
TaiI ACGT 4 cut(s) 71, 321, 495, 886
TaqI TCGA 2 cut(s) 27, 951
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 3 cut(s) 509, 521, 1194
Tru1I TTAA 2 cut(s) 135, 1095
Tru9I TTAA 2 cut(s) 135, 1095
TscAI CASTG 3 cut(s) 589, 1020, 1143
TseFI GTSAC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 3 cut(s) 34, 106, 967
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 3 cut(s) 589, 1020, 1143
Tth111I GACNNNGTC 2 cut(s) 70, 947
VpaK11BI GGWCC 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 855
XceI RCATGY 1 cut(s) 1190
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 273
XspI CTAG 6 cut(s) 60, 827, 860, 1022, 1029, 1049
ZraI GACGTC 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.