Prupe.7G144300_v2.0.a1

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014372
Physical Location & Seq
Forward (+)
15810351 .. 15813813
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G144300.1

Sequence Viewer

Length: 1578 bp
ATGCAATCTGCTTTCTACACAGCCTCCAACTCCCACCAGTTTCCTCTTCCATGGAAAATCCATGAAACCCAATTGACAGCTCAGAGACCATTCCCTAAGAGGCTCAAAACCTGCTTCAAAGCCCCAACCTTTACCAATTCATTGAGAACTTCAATTGGATATGAACCAGAAGAAAGCCTTGGCAAAGAACCAGGACCCGCCACGCCGGGTCATCTTCCGGTGGTGATTCGGAGGTCAGGTAGAGTTTCTAGGTACTTCTGGGATGGCAGTTGTTTGCAGTTAGTTGGAGTAGATGGCGGTGCGGCGTCGTTTAGTTTCAATTTCGAAGATGGGTTCCGAAAATTGTATAGAATCTGTAGTTTGGCTGTTAGGGATTTCTTTATCCCTAAACAAGTTAGTGGAAATTACATGGATTATGTGAAATGGAAGTTCTTGCACCGGGTTTTCAGTTCGGCACTACAGGTCCTCGCCACTCAGGCAATGTTTCGAGCTATTGGCATTGGGTACTCTCGTTCACTTCCAGCAGCTGCTGCCCTTAATTGGCTCTTGAAGGAGGGACTTGGACGGCTGAGTAGGTGCATCTACACTGCTAGTCTAGCATCTGCTTTTGATACCAATTTGAAGAGAGTTAGGTTTTCAACATCAGTGCTATTCAGTTTGAGCCTTGGAGTTGAGTTGTTGACCCCTGCATTTCCGCAATACTTCTTGGTTCTGGCATCCTTGGCCAACATGGCAAAACAAATAAGCTTGGCTTGCTATCTAGCGACTGGTTCCGCTGTTCATCGAAGTTTTGCAATAGCAGATAACCTTGGTGAAGTTTCTGCAAAGGCACAGATTCAAACAGTGTGCTTTGATAACCTTGGCCTTTTGCTCGCTGCACTGTTAAATATGTTGTTCAAGAACAGCCAAAGATTGCAAACAGCCTTGCCCTTTTTTGTATACCCCATTTTCTCAGTGATTGACCTCTTTGCAATATATCAAGGGCTTAAACATGTCCATTTACAAACATTAACTAAGGATAGACTTGAAATTCTACTAAATACTTGGATTGAGTTAGGTTATGTTCCTGCACCTGCAGAAGTTAGTAAAGAGGAAGGAATTGATTTCCTAAGGAGCAAAGACAAAGGATTATGGCCTACCAGAATAGGGTACTTGGATCCCAAGAATCAGATCCCTGAGTTGTCCATGATGACAATGCGTTCTACAAGTGGTGAGGATTATTACTTAATATCCATGGAGATGTTCTACACAAGAATTAGAAGAAGTAGGCGACAAGGCATCCTTATTTGTGTACGGGAAGGAGCCAGGACAACAGATATTGTCATGGGTTTGTTACAGGCATGCTATATCCGCAAATCCCTCCTTATGAACAAGTATAGGTGGGAGAATTTGTTTGATGCTGGAGATGAATTAGAGTCAGCTCTGAAGGAGTGGTCTAAATTAATTGAGGAGTGCAAGCGCCGTGCACAAGGCGACATGTGCCTCTTGAACAAGCAAATGCTGACTTTGGGTTGGGCTACGAAAAACGTTTTATTGAGTTCGCAAGAACAGATTCGATACAGTTTTGTAGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

526

Amino Acids

59.49

Weight (kDa)

9.37

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23470
fragaria_vesca FvH4_1g14600 FvH4_1g14600 FvH4_1g14600
malus_domestica MD02G1159600.v1.1
prunus_persica Prupe.7G144300_v2.0.a1
pyrus_communis pycom02g12590
rosa_chinensis RchiOBHm_Chr2g0103381
rosa_laevigata RLG00000017232
rosa_multiflora Rmu_sc0002434.1_g000009
rosa_roxburghii Rroxscaffold_2G00139670
rosa_rugosa Rorug02G0114700
rosa_samantha Rh2AG162800 Rh2BG169900 Rh2CG170000 Rh2DG168900
rosa_wichuraiana Rw2G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1081
Acc36I ACCTGC 2 cut(s) 119, 1081
AccI GTMKAC 1 cut(s) 939
AciI CCGC 6 cut(s) 198, 297, 302, 695, 774, 1351
AclI AACGTT 1 cut(s) 1527
AclWI GGATC 3 cut(s) 1151, 1164, 1165
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 2 cut(s) 1029, 1387
AcuI CTGAAG 1 cut(s) 1445
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 4 cut(s) 254, 506, 1151, 1293
AfiI CCNNNNNNNGG 2 cut(s) 540, 1146
AflIII ACRYGT 2 cut(s) 991, 1476
AjnI CCWGG 2 cut(s) 190, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 80, 491, 527, 747, 1421
AluI AGCT 5 cut(s) 80, 491, 527, 747, 1421
Alw21I GWGCWC 1 cut(s) 1468
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 1464
AlwI GGATC 3 cut(s) 1151, 1164, 1165
AlwNI CAGNNNCTG 2 cut(s) 527, 530
AoxI GGCC 3 cut(s) 723, 862, 1133
ApaLI GTGCAC 1 cut(s) 1464
ApeKI GCWGC 4 cut(s) 524, 527, 530, 875
ApoI RAATTY 2 cut(s) 1029, 1387
AseI ATTAAT 1 cut(s) 1442
Asp700I GAANNNNTTC 1 cut(s) 1551
AspLEI GCGC 1 cut(s) 1461
AspS9I GGNCC 2 cut(s) 194, 463
AsuC2I CCSGG 2 cut(s) 207, 440
AsuHPI GGTGA 3 cut(s) 235, 824, 1223
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 2 cut(s) 194, 463
AxyI CCTNAGG 1 cut(s) 1109
BaeGI GKGCMC 1 cut(s) 1468
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BalI TGGCCA 1 cut(s) 725
BamHI GGATCC 1 cut(s) 1156
Bbv12I GWGCWC 1 cut(s) 1468
BbvI GCAGC 4 cut(s) 514, 517, 536, 862
BccI CCATC 3 cut(s) 257, 287, 323
BceAI ACGGC 2 cut(s) 581, 1446
BciT130I CCWGG 2 cut(s) 192, 1306
BcnI CCSGG 2 cut(s) 207, 440
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 4 cut(s) 249, 591, 596, 761
BfmI CTRYAG 3 cut(s) 355, 458, 1074
BfoI RGCGCY 1 cut(s) 1462
BfuAI ACCTGC 2 cut(s) 119, 1081
BglI GCCNNNNNGGC 2 cut(s) 476, 731
BisI GCNGC 5 cut(s) 303, 525, 528, 531, 876
BlsI GCNGC 5 cut(s) 304, 526, 529, 532, 877
Bme1390I CCNGG 4 cut(s) 192, 207, 440, 1306
Bme18I GGWCC 2 cut(s) 194, 463
BmgT120I GGNCC 2 cut(s) 194, 463
BmiI GGNNCC 5 cut(s) 196, 335, 772, 1158, 1303
BmrFI CCNGG 4 cut(s) 192, 207, 440, 1306
BmsI GCATC 5 cut(s) 588, 608, 725, 1287, 1387
BpmI CTGGAG 1 cut(s) 1422
Bpu14I TTCGAA 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 207, 440
BsaHI GRCGYC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 223, 253, 1376, 1406
Bsc4I CCNNNNNNNGG 2 cut(s) 540, 1146
Bse1I ACTGG 2 cut(s) 37, 772
Bse21I CCTNAGG 1 cut(s) 1109
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 2 cut(s) 192, 1306
BseDI CCNNGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
BseGI GGATG 3 cut(s) 268, 716, 1278
BseLI CCNNNNNNNGG 2 cut(s) 540, 1146
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 5 cut(s) 95, 488, 560, 966, 1167
BseNI ACTGG 2 cut(s) 37, 772
BseRI GAGGAG 1 cut(s) 1463
BseSI GKGCMC 1 cut(s) 1468
BseXI GCAGC 4 cut(s) 514, 517, 536, 862
BsgI GTGCAG 2 cut(s) 861, 1053
BshFI GGCC 3 cut(s) 725, 864, 1135
BsiHKAI GWGCWC 1 cut(s) 1468
BsiSI CCGG 3 cut(s) 206, 218, 439
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 540, 1146
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 3 cut(s) 725, 864, 1135
Bso31I GGTCTC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 1468
Bsp143I GATC 2 cut(s) 1156, 1170
Bsp19I CCATGG 2 cut(s) 50, 1233
BspACI CCGC 6 cut(s) 198, 297, 302, 695, 774, 1351
BspANI GGCC 3 cut(s) 725, 864, 1135
BspCNI CTCAG 5 cut(s) 94, 487, 561, 965, 1168
BspLI GGNNCC 5 cut(s) 196, 335, 772, 1158, 1303
BspMAI CTGCAG 1 cut(s) 1078
BspMI ACCTGC 2 cut(s) 119, 1081
BspPI GGATC 3 cut(s) 1151, 1164, 1165
BspT104I TTCGAA 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 37, 772
BssECI CCNNGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
BssMI GATC 2 cut(s) 1156, 1170
BssNAI GTATAC 1 cut(s) 940
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
Bst1107I GTATAC 1 cut(s) 940
Bst2UI CCWGG 2 cut(s) 192, 1306
Bst4CI ACNGT 3 cut(s) 844, 882, 1562
Bst6I CTCTTC 2 cut(s) 51, 617
BstACI GRCGYC 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 4 cut(s) 754, 873, 1342, 1457
BstDEI CTNAG 8 cut(s) 81, 96, 474, 569, 952, 1014, 1109, 1176
BstDSI CCRYGG 2 cut(s) 50, 1233
BstF5I GGATG 3 cut(s) 268, 716, 1278
BstH2I RGCGCY 1 cut(s) 1462
BstHHI GCGC 1 cut(s) 1461
BstKTI GATC 2 cut(s) 1159, 1173
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 1156, 1170
BstMWI GCNNNNNNNGC 8 cut(s) 476, 530, 596, 722, 731, 753, 1350, 1479
BstNI CCWGG 2 cut(s) 192, 1306
BstNSI RCATGY 3 cut(s) 995, 1344, 1480
BstSCI CCNGG 4 cut(s) 190, 205, 438, 1304
BstSFI CTRYAG 3 cut(s) 355, 458, 1074
BstSLI GKGCMC 1 cut(s) 1468
BstV1I GCAGC 4 cut(s) 514, 517, 536, 862
BstX2I RGATCY 2 cut(s) 1156, 1170
BstYI RGATCY 2 cut(s) 1156, 1170
BstZ17I GTATAC 1 cut(s) 940
Bsu36I CCTNAGG 1 cut(s) 1109
BsuRI GGCC 3 cut(s) 725, 864, 1135
BtgI CCRYGG 2 cut(s) 50, 1233
BtsCI GGATG 3 cut(s) 268, 716, 1278
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 5 cut(s) 585, 651, 849, 878, 960
BveI ACCTGC 2 cut(s) 119, 1081
Cac8I GCNNGC 4 cut(s) 754, 873, 1342, 1457
CaiI CAGNNNCTG 2 cut(s) 527, 530
CfoI GCGC 1 cut(s) 1461
Cfr13I GGNCC 2 cut(s) 194, 463
CseI GACGC 1 cut(s) 294
Csp6I GTAC 4 cut(s) 253, 505, 1150, 1292
CviQI GTAC 4 cut(s) 253, 505, 1150, 1292
DdeI CTNAG 8 cut(s) 81, 96, 474, 569, 952, 1014, 1109, 1176
DpnI GATC 2 cut(s) 1158, 1172
DpnII GATC 2 cut(s) 1156, 1170
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 2 cut(s) 51, 617
EarI CTCTTC 2 cut(s) 51, 617
Eco130I CCWWGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 194, 463
Eco57I CTGAAG 1 cut(s) 1445
Eco81I CCTNAGG 1 cut(s) 1109
EcoO109I RGGNCCY 2 cut(s) 194, 463
EcoRII CCWGG 2 cut(s) 190, 1304
EcoT14I CCWWGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
ErhI CCWWGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 736, 768, 1266, 1298
FaqI GGGAC 1 cut(s) 570
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 5 cut(s) 303, 525, 528, 531, 876
FokI GGATG 3 cut(s) 275, 703, 1265
Fsp4HI GCNGC 5 cut(s) 303, 525, 528, 531, 876
FspBI CTAG 4 cut(s) 249, 591, 596, 761
GlaI GCGC 1 cut(s) 1460
GluI GCNGC 5 cut(s) 303, 525, 528, 531, 876
GsuI CTGGAG 1 cut(s) 1422
HaeII RGCGCY 1 cut(s) 1462
HaeIII GGCC 3 cut(s) 725, 864, 1135
HapII CCGG 3 cut(s) 206, 218, 439
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 1461
Hin1I GRCGYC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 1459
HinP1I GCGC 1 cut(s) 1459
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 745
HinfI GANTC 6 cut(s) 226, 351, 835, 1165, 1415, 1552
HpaII CCGG 3 cut(s) 206, 218, 439
HphI GGTGA 3 cut(s) 235, 824, 1223
Hpy166II GTNNAC 5 cut(s) 515, 681, 940, 1292, 1466
Hpy188I TCNGA 5 cut(s) 84, 231, 338, 1170, 1425
Hpy188III TCNNGA 3 cut(s) 547, 898, 1486
Hpy8I GTNNAC 5 cut(s) 515, 681, 940, 1292, 1466
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 544, 1088, 1292, 1420
HpyCH4III ACNGT 3 cut(s) 844, 882, 1562
HpyCH4IV ACGT 1 cut(s) 1527
HpyF10VI GCNNNNNNNGC 8 cut(s) 476, 530, 596, 722, 731, 753, 1350, 1479
HpyF3I CTNAG 8 cut(s) 81, 96, 474, 569, 952, 1014, 1109, 1176
HpySE526I ACGT 1 cut(s) 1527
Hsp92I GRCGYC 1 cut(s) 305
HspAI GCGC 1 cut(s) 1459
Kzo9I GATC 2 cut(s) 1156, 1170
LmnI GCTCC 2 cut(s) 1113, 1301
Lsp1109I GCAGC 4 cut(s) 514, 517, 536, 862
LweI GCATC 5 cut(s) 588, 608, 725, 1287, 1387
MaeI CTAG 4 cut(s) 249, 591, 596, 761
MaeII ACGT 1 cut(s) 1527
MaeIII GTNAC 1 cut(s) 1332
MalI GATC 2 cut(s) 1158, 1172
MboI GATC 2 cut(s) 1156, 1170
MboII GAAGA 6 cut(s) 38, 182, 206, 338, 634, 1272
MfeI CAATTG 2 cut(s) 71, 153
MflI RGATCY 2 cut(s) 1156, 1170
MhlI GDGCHC 1 cut(s) 1468
MlsI TGGCCA 1 cut(s) 725
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 1 cut(s) 1424
MmeI TCCRAC 2 cut(s) 51, 265
Mox20I TGGCCA 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 1551
MscI TGGCCA 1 cut(s) 725
MseI TTAA 6 cut(s) 537, 884, 987, 1010, 1226, 1442
MslI CAYNNNNRTG 1 cut(s) 1238
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 2 cut(s) 527, 776
MspI CCGG 3 cut(s) 206, 218, 439
MspR9I CCNGG 4 cut(s) 192, 207, 440, 1306
MunI CAATTG 2 cut(s) 71, 153
MvaI CCWGG 2 cut(s) 192, 1306
MwoI GCNNNNNNNGC 8 cut(s) 476, 530, 596, 722, 731, 753, 1350, 1479
NciI CCSGG 2 cut(s) 207, 440
NcoI CCATGG 2 cut(s) 50, 1233
NdeII GATC 2 cut(s) 1156, 1170
NlaIV GGNNCC 5 cut(s) 196, 335, 772, 1158, 1303
NspI RCATGY 3 cut(s) 995, 1344, 1480
NspV TTCGAA 1 cut(s) 324
PaeI GCATGC 1 cut(s) 1344
PaqCI CACCTGC 1 cut(s) 1081
PciI ACATGT 2 cut(s) 991, 1476
PdmI GAANNNNTTC 1 cut(s) 1551
PfeI GAWTC 5 cut(s) 226, 351, 835, 1165, 1552
PkrI GCNGC 5 cut(s) 304, 526, 529, 532, 877
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PpuMI RGGWCCY 2 cut(s) 194, 463
PscI ACATGT 2 cut(s) 991, 1476
PshBI ATTAAT 1 cut(s) 1442
Psp1406I AACGTT 1 cut(s) 1527
Psp5II RGGWCCY 2 cut(s) 194, 463
Psp6I CCWGG 2 cut(s) 190, 1304
PspGI CCWGG 2 cut(s) 190, 1304
PspN4I GGNNCC 5 cut(s) 196, 335, 772, 1158, 1303
PspPI GGNCC 2 cut(s) 194, 463
PspPPI RGGWCCY 2 cut(s) 194, 463
PstI CTGCAG 1 cut(s) 1078
PstNI CAGNNNCTG 2 cut(s) 527, 530
PsuI RGATCY 2 cut(s) 1156, 1170
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 4 cut(s) 254, 506, 1151, 1293
RsaNI GTAC 4 cut(s) 253, 505, 1150, 1292
RseI CAYNNNNRTG 1 cut(s) 1238
SaqAI TTAA 6 cut(s) 537, 884, 987, 1010, 1226, 1442
SatI GCNGC 5 cut(s) 303, 525, 528, 531, 876
Sau3AI GATC 2 cut(s) 1156, 1170
Sau96I GGNCC 2 cut(s) 194, 463
SchI GAGTC 1 cut(s) 1424
ScrFI CCNGG 4 cut(s) 192, 207, 440, 1306
SduI GDGCHC 1 cut(s) 1468
SfaNI GCATC 5 cut(s) 588, 608, 725, 1287, 1387
SfcI CTRYAG 3 cut(s) 355, 458, 1074
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 2 cut(s) 194, 463
SmiMI CAYNNNNRTG 1 cut(s) 1238
SphI GCATGC 1 cut(s) 1344
SsiI CCGC 6 cut(s) 198, 297, 302, 695, 774, 1351
SspMI CTAG 4 cut(s) 249, 591, 596, 761
StyD4I CCNGG 4 cut(s) 190, 205, 438, 1304
StyI CCWWGG 7 cut(s) 50, 178, 664, 720, 808, 859, 1233
TaaI ACNGT 3 cut(s) 844, 882, 1562
TaiI ACGT 1 cut(s) 1530
TaqI TCGA 4 cut(s) 324, 487, 784, 1555
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 5 cut(s) 226, 351, 835, 1165, 1552
Tru1I TTAA 6 cut(s) 537, 884, 987, 1010, 1226, 1442
Tru9I TTAA 6 cut(s) 537, 884, 987, 1010, 1226, 1442
TscAI CASTG 5 cut(s) 592, 651, 849, 885, 960
TseI GCWGC 4 cut(s) 524, 527, 530, 875
TspDTI ATGAA 6 cut(s) 78, 129, 177, 770, 1382, 1422
TspRI CASTG 5 cut(s) 592, 651, 849, 885, 960
VneI GTGCAC 1 cut(s) 1464
VpaK11BI GGWCC 2 cut(s) 194, 463
VspI ATTAAT 1 cut(s) 1442
XapI RAATTY 2 cut(s) 1029, 1387
XceI RCATGY 3 cut(s) 995, 1344, 1480
XmiI GTMKAC 1 cut(s) 939
XmnI GAANNNNTTC 1 cut(s) 1551
XspI CTAG 4 cut(s) 249, 591, 596, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.