Rorug02G0114700

Vitamin B6 photo-protection and homoeostasis

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
9785303 .. 9788801
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0114700.1

Sequence Viewer

Length: 495 bp
ATGAAGGACGGGGTACGTGGGTTTCATGAGCAGGATACTGAAGTGAAGAAACAGTTTTATACTCGTGATCACTCCAGTAGTCCATTCGTCTACAACAGCAATTTTGATCTGTATAGTGCACCGGCAACTAATTGGAGGGATAGTTTTTTGTGTTATATGGCTCCTACTCCTCCTAAGACAGAAGACCTGCCAGAAGTATGCAGAGAAATCCTTGTTGAATACTCGAAGCAAGTAATGAAGTTGGGGAAGCTATTGTTTGAGTTGTTGTCAGAGGCTCTTGGGCTAAAACTAACTCACTTGAATGATATAGATTGCAGTGAGGGGCTTCTGGTTTTAGGCCATTACTATCCTGCTCGTCCACAACCAGAATTAACAATAGGCACAAGCAAGATAATATTGGTGGTCTTCAAGTCCTTCTGCAAGATAATATTGGTGGTCTTCAAGTCCTTCATCAGAACAACTGGATTGACGTACCCTATGTACCGGGTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.84

Weight (kDa)

7.66

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 3 cut(s) 15, 473, 482
AgsI TTSAA 4 cut(s) 218, 301, 409, 442
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 121
Alw44I GTGCAC 1 cut(s) 117
AoxI GGCC 1 cut(s) 337
ApaLI GTGCAC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 121
BaeI ACNNNNGTAYC 3 cut(s) 27, 38, 60
BanI GGYRCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 3 cut(s) 189, 397, 430
Bbv12I GWGCWC 1 cut(s) 121
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 485
BmiI GGNNCC 2 cut(s) 162, 489
BmrFI CCNGG 1 cut(s) 485
BpiI GAAGAC 3 cut(s) 189, 397, 430
BpmI CTGGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 75, 466
BseNI ACTGG 2 cut(s) 75, 466
BseRI GAGGAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 121
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 2 cut(s) 122, 484
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 67, 106
BspANI GGCC 1 cut(s) 339
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 162, 489
BspMI ACCTGC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 2 cut(s) 75, 466
BssAI RCCGGY 1 cut(s) 121
BssMI GATC 2 cut(s) 67, 106
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 174, 492
BstKTI GATC 2 cut(s) 70, 109
BstMBI GATC 2 cut(s) 67, 106
BstSCI CCNGG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 121
BstV2I GAAGAC 3 cut(s) 189, 397, 430
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 121
Csp6I GTAC 3 cut(s) 14, 472, 481
CviAII CATG 1 cut(s) 26
CviJI RGCY 6 cut(s) 161, 250, 275, 283, 325, 339
CviKI_1 RGCY 6 cut(s) 161, 250, 275, 283, 325, 339
CviQI GTAC 3 cut(s) 14, 472, 481
DdeI CTNAG 2 cut(s) 174, 492
DpnI GATC 2 cut(s) 69, 108
DpnII GATC 2 cut(s) 67, 106
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 1 cut(s) 29
FaiI YATR 8 cut(s) 27, 60, 114, 156, 158, 199, 308, 479
FatI CATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 122, 484
Hin1II CATG 1 cut(s) 29
HpaII CCGG 2 cut(s) 122, 484
Hpy166II GTNNAC 3 cut(s) 91, 119, 359
Hpy188I TCNGA 2 cut(s) 271, 455
Hpy188III TCNNGA 2 cut(s) 26, 65
Hpy8I GTNNAC 3 cut(s) 91, 119, 359
HpyAV CCTTC 2 cut(s) 424, 457
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 2 cut(s) 16, 470
HpyCH4V TGCA 4 cut(s) 119, 201, 315, 420
HpyF3I CTNAG 2 cut(s) 174, 492
HpySE526I ACGT 2 cut(s) 16, 470
Hsp92II CATG 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 2 cut(s) 67, 106
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 17, 88, 135, 200, 204, 314, 363, 378, 447
MaeII ACGT 2 cut(s) 16, 470
MalI GATC 2 cut(s) 69, 108
MboI GATC 2 cut(s) 67, 106
MboII GAAGA 4 cut(s) 58, 194, 397, 430
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 100, 130, 368
MnlI CCTC 4 cut(s) 129, 180, 265, 313
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 2 cut(s) 122, 484
MspR9I CCNGG 1 cut(s) 485
NciI CCSGG 1 cut(s) 485
NdeII GATC 2 cut(s) 67, 106
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 2 cut(s) 162, 489
PagI TCATGA 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 162, 489
RsaI GTAC 3 cut(s) 15, 473, 482
RsaNI GTAC 3 cut(s) 14, 472, 481
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 371
Sau3AI GATC 2 cut(s) 67, 106
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 121
SetI ASST 4 cut(s) 19, 189, 252, 473
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 100, 130, 368
SspI AATATT 2 cut(s) 396, 429
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 2 cut(s) 19, 473
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 100, 130, 368
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 1 cut(s) 322
TspDTI ATGAA 4 cut(s) 14, 17, 251, 439
TspRI CASTG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.