Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

8196553 .. 8199526

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCTACCAGAGGAAAGCTACCCTCTTTTTTCAAAATTGTTCCGAGTGATCGGTTCACTAACAAGTTGAAAATACCAACAGAATTTCTCCAGCATTTCCATGGAAATGTGCCTCACCAGTGCCATCTTCAAACCGCAGCCCGAACTTGTCTTGTTCATGTGGAAGTGGTCAATAACAAGTTCTATTTCCAGAAGGGGTGGAATGAATTTCTTCAAGAGAATGGTGTAAAGTATGGGCAACTTTTAGTCTTCCATTATGGTGGAAACTCACACTTCCATGTTGATATCTTTGGAAAAAACACCTGTGGAGAGCTGTTTGTAATGCCTGAAACAGAAGTATCTCTTGAAATCTCAGATGAATCTCCAGTGTCAAGCCCTCTGCCAAGTTCGAGTGGTAAAGCAAGAATGAAAAACAAAGAGGCACGTTGGTCCAAATCAGAAATGAAAAAGAAAGATAGAGGAGGCACATCTAGCACACAAAGATTCATAGAAAAGGGTTTGTGGGAAGCTCGCATCAGAGCTGAAGCATTCAAATCAGAAAACCCTTCTGCTTTCTTAGTTTCCATGAAGCCCTCCTACATGAAGTTCAAATTTGTGTGGTTGCCAGCAGAGTTCACCATGCTAGTGAAGCCATTTATTGAGAACTCTGGTGATGTTTTCATTCGGGTTTCAAATGGGAGAGTGAGGACATGGCGGGCTCAATTGACTTGTGATAATGTTGCTACCAAAAGATGCAAATTACATGTTTTAATCGAAGTTGTCATTTTCCACACAAAAGAAGCAGAAACACAGAGCTTATCACCAGACATTTTTGATAATGAGGATCATGAAAATGATGAGGAGGGTGATGATGAAAGTGAAGATGAAGAAGAAACTGAAGATGAGGAGGAGGAGGAGGAAGATGACGATTCTAGTGAAACACTTAGCTGTGTTCCACTAGGCTCCAGAACAGTATCTTCAAGGCTTCACAAGAGAAGGAGAAACTGGACAAGTTCTATTGCTAAATCACAAAGCAACATAAAAAGTGGTGGTGGCTTGTCTAGAGCTGAAAGGACCCTAAATGCTATAGCTCTAGGGAAAGCTAATGCTTTCAAATCTGAGTCTGCCAGCCCTTCTTTTGTGGTTTCATTGGGTTCCTCATACGCCGGTGGAAGTTATGTGAATTTTCCATGCAGTTTTTCTGAGAAATATATTACTGAACGGCGCCCTAATCACATCATCCTTTGGGTTGAGTCTGTTGAGAAGAGCTTTTGGATCAATGTCAATTATATTGGGAGGACAACCAGATTACAAGCTGGTTGGTCTGAATTTGCGCGAGTCAATAATCTGAAAATGGGCGATGTTTGTGTCTTTGTGTTGACCAATACCAAAACTTTTGAATTTGACGTTGAAATTTTCCACTTAACAGATGTTTGCACCTCATCACAGGGGAAAAGAAAGCAGCTGAGGACTGATTCAACACACAGGAAACAGAAGTCTAGAAAGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

498

Amino Acids

56.64

Weight (kDa)

7.63

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 99	5.2e-11	B3 DNA binding domain
B3	PF02362	383 - 466	2.2e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1203
AccII	CGCG	1 cut(s)	1315
AciI	CCGC	2 cut(s)	135, 694
AclWI	GGATC	2 cut(s)	831, 1262
AcsI	RAATTY	7 cut(s)	83, 206, 590, 1162, 1307, 1379, 1392
AcuI	CTGAAG	2 cut(s)	543, 897
AcyI	GRCGYC	1 cut(s)	1204
AflIII	ACRYGT	1 cut(s)	742
AlwI	GGATC	2 cut(s)	831, 1262
ApeKI	GCWGC	2 cut(s)	137, 1441
ApoI	RAATTY	7 cut(s)	83, 206, 590, 1162, 1307, 1379, 1392
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	1206, 1315
AspS9I	GGNCC	2 cut(s)	429, 1053
AsuHPI	GGTGA	5 cut(s)	107, 607, 662, 792, 857
AvaII	GGWCC	2 cut(s)	429, 1053
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanI	GGYRCC	1 cut(s)	1203
BanII	GRGCYC	1 cut(s)	700
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbsI	GAAGAC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	1445
BbvI	GCAGC	2 cut(s)	149, 1453
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	1217
BfaI	CTAG	7 cut(s)	471, 623, 912, 938, 1041, 1073, 1479
BfmI	CTRYAG	1 cut(s)	1065
BfoI	RGCGCY	1 cut(s)	1207
BisI	GCNGC	2 cut(s)	138, 1442
BlsI	GCNGC	2 cut(s)	139, 1443
Bme18I	GGWCC	2 cut(s)	429, 1053
BmgT120I	GGNCC	2 cut(s)	429, 1053
BmiI	GGNNCC	4 cut(s)	943, 1055, 1135, 1205
BmsI	GCATC	2 cut(s)	522, 722
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	3 cut(s)	74, 348, 928
Bpu10I	CCTNAGC	1 cut(s)	1445
BsaHI	GRCGYC	1 cut(s)	1204
BsaJI	CCNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	3 cut(s)	118, 365, 989
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	1218
BseMII	CTCAG	4 cut(s)	366, 1089, 1173, 1436
BseNI	ACTGG	3 cut(s)	118, 365, 989
BseRI	GAGGAG	6 cut(s)	474, 854, 899, 902, 905, 908
BseXI	GCAGC	2 cut(s)	149, 1453
Bsh1236I	CGCG	1 cut(s)	1315
BshNI	GGYRCC	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	1146
BsmI	GAATGC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	49, 823, 1254
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	2 cut(s)	135, 694
BspCNI	CTCAG	4 cut(s)	365, 1090, 1174, 1437
BspFNI	CGCG	1 cut(s)	1315
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	4 cut(s)	943, 1055, 1135, 1205
BspPI	GGATC	2 cut(s)	831, 1262
BspQI	GCTCTTC	1 cut(s)	1238
BspT107I	GGYRCC	1 cut(s)	1203
BsrFI	RCCGGY	1 cut(s)	1145
BsrI	ACTGG	3 cut(s)	118, 365, 989
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	49, 823, 1254
BssNI	GRCGYC	1 cut(s)	1204
BssT1I	CCWWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	952
Bst6I	CTCTTC	1 cut(s)	1238
BstACI	GRCGYC	1 cut(s)	1204
BstC8I	GCNNGC	4 cut(s)	511, 606, 696, 1108
BstDEI	CTNAG	6 cut(s)	352, 556, 923, 1098, 1182, 1445
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	1218
BstFNI	CGCG	1 cut(s)	1315
BstH2I	RGCGCY	1 cut(s)	1207
BstHHI	GCGC	2 cut(s)	1206, 1315
BstKTI	GATC	3 cut(s)	52, 826, 1257
BstMBI	GATC	3 cut(s)	49, 823, 1254
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 628
BstNSI	RCATGY	1 cut(s)	746
BstSFI	CTRYAG	1 cut(s)	1065
BstUI	CGCG	1 cut(s)	1315
BstV1I	GCAGC	2 cut(s)	149, 1453
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	1353
BtsCI	GGATG	1 cut(s)	1218
BtsIMutI	CAGTG	2 cut(s)	125, 372
Cac8I	GCNNGC	4 cut(s)	511, 606, 696, 1108
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	2 cut(s)	1206, 1315
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	2 cut(s)	429, 1053
DdeI	CTNAG	6 cut(s)	352, 556, 923, 1098, 1182, 1445
DinI	GGCGCC	1 cut(s)	1205
DpnI	GATC	3 cut(s)	51, 825, 1256
DpnII	GATC	3 cut(s)	49, 823, 1254
Eam1104I	CTCTTC	1 cut(s)	1238
EarI	CTCTTC	1 cut(s)	1238
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	700
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	429, 1053
Eco57I	CTGAAG	2 cut(s)	543, 897
EcoO109I	RGGNCCY	1 cut(s)	1053
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	700
EgeI	GGCGCC	1 cut(s)	1205
EheI	GGCGCC	1 cut(s)	1205
ErhI	CCWWGG	1 cut(s)	100
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FauI	CCCGC	1 cut(s)	687
Fnu4HI	GCNGC	2 cut(s)	138, 1442
FokI	GGATG	1 cut(s)	1205
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	2 cut(s)	138, 1442
FspBI	CTAG	7 cut(s)	471, 623, 912, 938, 1041, 1073, 1479
GlaI	GCGC	2 cut(s)	1205, 1314
GluI	GCNGC	2 cut(s)	138, 1442
GsuI	CTGGAG	3 cut(s)	74, 348, 928
HaeII	RGCGCY	1 cut(s)	1207
HapII	CCGG	1 cut(s)	1146
HhaI	GCGC	2 cut(s)	1206, 1315
Hin1I	GRCGYC	1 cut(s)	1204
Hin6I	GCGC	2 cut(s)	1204, 1313
HinP1I	GCGC	2 cut(s)	1204, 1313
HincII	GTYRAC	1 cut(s)	1359
HindII	GTYRAC	1 cut(s)	1359
HinfI	GANTC	8 cut(s)	359, 483, 908, 1100, 1232, 1317, 1454, 1486
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	5 cut(s)	107, 607, 662, 792, 857
Hpy166II	GTNNAC	3 cut(s)	57, 615, 1359
Hpy188I	TCNGA	9 cut(s)	45, 355, 439, 518, 538, 1099, 1183, 1306, 1329
Hpy188III	TCNNGA	7 cut(s)	190, 215, 344, 827, 945, 1041, 1479
Hpy8I	GTNNAC	3 cut(s)	57, 615, 1359
HpyAV	CCTTC	4 cut(s)	187, 555, 969, 1122
HpyCH4III	ACNGT	1 cut(s)	952
HpyCH4IV	ACGT	2 cut(s)	424, 1386
HpyCH4V	TGCA	3 cut(s)	735, 1173, 1416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 628
HpyF3I	CTNAG	6 cut(s)	352, 556, 923, 1098, 1182, 1445
HpySE526I	ACGT	2 cut(s)	424, 1386
Hsp92I	GRCGYC	1 cut(s)	1204
HspAI	GCGC	2 cut(s)	1204, 1313
KasI	GGCGCC	1 cut(s)	1203
Kzo9I	GATC	3 cut(s)	49, 823, 1254
LguI	GCTCTTC	1 cut(s)	1238
LmnI	GCTCC	1 cut(s)	947
Lsp1109I	GCAGC	2 cut(s)	149, 1453
LweI	GCATC	2 cut(s)	522, 722
MaeI	CTAG	7 cut(s)	471, 623, 912, 938, 1041, 1073, 1479
MaeII	ACGT	2 cut(s)	424, 1386
MalI	GATC	3 cut(s)	51, 825, 1256
MboI	GATC	3 cut(s)	49, 823, 1254
MfeI	CAATTG	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	700
Mly113I	GGCGCC	1 cut(s)	1204
MlyI	GAGTC	3 cut(s)	1109, 1241, 1326
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	749, 1403
MslI	CAYNNNNRTG	6 cut(s)	99, 105, 258, 276, 623, 831
MspA1I	CMGCKG	1 cut(s)	1444
MspI	CCGG	1 cut(s)	1146
MunI	CAATTG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	527
MvnI	CGCG	1 cut(s)	1315
MwoI	GCNNNNNNNGC	2 cut(s)	471, 628
NarI	GGCGCC	1 cut(s)	1204
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	49, 823, 1254
NlaIV	GGNNCC	4 cut(s)	943, 1055, 1135, 1205
NspI	RCATGY	1 cut(s)	746
PagI	TCATGA	1 cut(s)	826
PciI	ACATGT	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	1238
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	5 cut(s)	359, 483, 908, 1454, 1486
PkrI	GCNGC	2 cut(s)	139, 1443
PleI	GAGTC	3 cut(s)	1108, 1240, 1325
PluTI	GGCGCC	1 cut(s)	1207
PpsI	GAGTC	3 cut(s)	1108, 1240, 1325
PpuMI	RGGWCCY	1 cut(s)	1053
PscI	ACATGT	1 cut(s)	742
Psp5II	RGGWCCY	1 cut(s)	1053
PspN4I	GGNNCC	4 cut(s)	943, 1055, 1135, 1205
PspPI	GGNCC	2 cut(s)	429, 1053
PspPPI	RGGWCCY	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	1444
RseI	CAYNNNNRTG	6 cut(s)	99, 105, 258, 276, 623, 831
SapI	GCTCTTC	1 cut(s)	1238
SaqAI	TTAA	2 cut(s)	749, 1403
SatI	GCNGC	2 cut(s)	138, 1442
Sau3AI	GATC	3 cut(s)	49, 823, 1254
Sau96I	GGNCC	2 cut(s)	429, 1053
SchI	GAGTC	3 cut(s)	1109, 1241, 1326
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	522, 722
SfcI	CTRYAG	1 cut(s)	1065
SfoI	GGCGCC	1 cut(s)	1205
SgrAI	CRCCGGYG	1 cut(s)	1145
SinI	GGWCC	2 cut(s)	429, 1053
SmiMI	CAYNNNNRTG	6 cut(s)	99, 105, 258, 276, 623, 831
SsiI	CCGC	2 cut(s)	135, 694
SspDI	GGCGCC	1 cut(s)	1203
SspMI	CTAG	7 cut(s)	471, 623, 912, 938, 1041, 1073, 1479
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	952
TaiI	ACGT	2 cut(s)	427, 1389
TaqI	TCGA	2 cut(s)	389, 753
TfiI	GAWTC	5 cut(s)	359, 483, 908, 1454, 1486
Tru1I	TTAA	2 cut(s)	749, 1403
Tru9I	TTAA	2 cut(s)	749, 1403
TscAI	CASTG	2 cut(s)	125, 372
TseI	GCWGC	2 cut(s)	137, 1441
TspRI	CASTG	2 cut(s)	125, 372
VpaK11BI	GGWCC	2 cut(s)	429, 1053
XapI	RAATTY	7 cut(s)	83, 206, 590, 1162, 1307, 1379, 1392
XbaI	TCTAGA	2 cut(s)	1040, 1478
XceI	RCATGY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	7 cut(s)	471, 623, 912, 938, 1041, 1073, 1479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.