Rorug01G0208900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000593
Physical Location & Seq
Reverse (-)
29434773 .. 29437083
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0208900.1

Sequence Viewer

Length: 675 bp
ATGGCTAATGGGAGCTTAGAGGAATGGTTGCATCCACTTCAGAGAATTGGTGTGACAAATGAGAGACCAACGAGTTTAATGTTTTCTCAAAGGTTGAACTTTGCTATTGACGTTTCTATGGCATTGGATTATCTCCATAATCATTGTGAAACGCCAATAGTTCACTGTGATCTCAAGCCGAGCAATGTTCTTCTCAATGATGATATGGTCGGGCATGTTGGTGATTTTGGCTGGGTAAGATTCCTTCCCAGAACTTCTGGAAATCAATCAAGCTCTGTCGGAGTTAAAGGAACAATTGGTTATGCTCCTCCAGAGTATGGTATGGGCAATGAAGTTTGGACACAAGGAGATGTGTACAGTTTTGGCATCCTGCTGTTGGAAATGTTCACAGGAAGAAGACCAACAGATAACATGTTCCAGGGAACTTTAAACCTTCATAGCTTTGTCAGAAAAGCTCTGCCTAAGCAAGTGAGAGAGATTGTCGATCCTGTTCTAGTTCCACGGAACATTGAAGCAGAGATTAGCGCTTGGGTAAAAATCGAAGACAGCTTGATTTCAGTTTTAGAAGTTGGTGTTGCTTGTTCGGCAGAGCTGCCTAGAGAACGGTTGGCCATTAGTGATGCTATGGCTGAGATGTGTCGGATAAGAAACAAACTTCATGCAAACTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

224

Amino Acids

25.05

Weight (kDa)

5.63

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 140 4e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 209 4.9e-21 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 317
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 1 cut(s) 356
AfeI AGCGCT 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 317, 376
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 97, 512
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 6 cut(s) 15, 273, 441, 455, 549, 592
AluI AGCT 6 cut(s) 15, 273, 441, 455, 549, 592
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 479
Aor51HI AGCGCT 1 cut(s) 526
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 233
BalI TGGCCA 1 cut(s) 611
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbsI GAAGAC 2 cut(s) 403, 549
BbvI GCAGC 1 cut(s) 579
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 494, 597
BfoI RGCGCY 1 cut(s) 528
BisI GCNGC 1 cut(s) 593
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 40, 375, 610
BpiI GAAGAC 2 cut(s) 403, 549
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 418, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 376
Bse3DI GCAATG 2 cut(s) 190, 334
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 418, 500
BseGI GGATG 2 cut(s) 31, 366
BseLI CCNNNNNNNGG 2 cut(s) 317, 376
BseMI GCAATG 2 cut(s) 190, 334
BseMII CTCAG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 231
BshFI GGCC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 317, 376
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 2 cut(s) 169, 484
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 622
BspPI GGATC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 190, 334
BsrGI TGTACA 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 418, 500
BssMI GATC 2 cut(s) 169, 484
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 167, 359, 606
BstAUI TGTACA 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 16, 462, 630
BstDSI CCRYGG 1 cut(s) 500
BstF5I GGATG 2 cut(s) 31, 366
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 2 cut(s) 172, 487
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 169, 484
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 2 cut(s) 218, 415
BstSCI CCNGG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 579
BstV2I GAAGAC 2 cut(s) 403, 549
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 500
BtsCI GGATG 2 cut(s) 31, 366
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 215, 412, 659
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 3 cut(s) 16, 462, 630
DpnI GATC 2 cut(s) 171, 486
DpnII GATC 2 cut(s) 169, 484
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 58
Eco47III AGCGCT 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 417
FaeI CATG 3 cut(s) 218, 415, 662
FatI CATG 3 cut(s) 214, 411, 658
Fnu4HI GCNGC 1 cut(s) 593
FokI GGATG 2 cut(s) 18, 353
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 2 cut(s) 494, 597
GlaI GCGC 1 cut(s) 526
GluI GCNGC 1 cut(s) 593
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 1 cut(s) 611
HhaI GCGC 1 cut(s) 527
Hin1II CATG 3 cut(s) 218, 415, 662
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HinfI GANTC 1 cut(s) 240
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 3 cut(s) 163, 355, 387
Hpy188I TCNGA 4 cut(s) 42, 281, 449, 642
Hpy188III TCNNGA 2 cut(s) 258, 311
Hpy8I GTNNAC 3 cut(s) 163, 355, 387
HpyAV CCTTC 2 cut(s) 254, 443
HpyCH4III ACNGT 3 cut(s) 167, 359, 606
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 31, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 3 cut(s) 16, 462, 630
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 218, 415, 662
HspAI GCGC 1 cut(s) 525
Kzo9I GATC 2 cut(s) 169, 484
LmnI GCTCC 2 cut(s) 12, 310
LpnPI CCDG 9 cut(s) 217, 243, 262, 324, 375, 383, 404, 431, 501
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 3 cut(s) 40, 375, 610
MaeI CTAG 2 cut(s) 494, 597
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 171, 486
MboI GATC 2 cut(s) 169, 484
MboII GAAGA 4 cut(s) 182, 405, 408, 554
MfeI CAATTG 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 2 cut(s) 45, 294
MluNI TGGCCA 1 cut(s) 611
MmeI TCCRAC 3 cut(s) 259, 357, 620
MnlI CCTC 2 cut(s) 13, 318
Mox20I TGGCCA 1 cut(s) 611
MscI TGGCCA 1 cut(s) 611
MseI TTAA 3 cut(s) 77, 285, 428
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 2 cut(s) 169, 484
NlaIII CATG 3 cut(s) 218, 415, 662
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 2 cut(s) 218, 415
PciI ACATGT 1 cut(s) 411
PfeI GAWTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 1 cut(s) 594
PscI ACATGT 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 417
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 3 cut(s) 77, 285, 428
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 2 cut(s) 169, 484
ScrFI CCNGG 1 cut(s) 419
SetI ASST 9 cut(s) 17, 95, 114, 275, 435, 443, 457, 551, 594
SfaNI GCATC 3 cut(s) 40, 375, 610
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 45, 294
SspMI CTAG 2 cut(s) 494, 597
StyD4I CCNGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 167, 359, 606
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 483, 540
TasI AATT 2 cut(s) 45, 294
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 3 cut(s) 77, 285, 428
Tru9I TTAA 3 cut(s) 77, 285, 428
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 345, 425, 647
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 317
XceI RCATGY 2 cut(s) 218, 415
XspI CTAG 2 cut(s) 494, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.