Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

13401471 .. 13404054

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCAACAGAAAGAAACCCCTCGTTTTTCAAGGTTCTTCAGGGTGATCAGTTCTCTATCAAATTGAAAATCCCTAGAGCATTTCTCCAGTATTTTAATGCAAAGGTACCTCCCAAGTGCTTTCTTCAAACCCTAGGTCAAACTTGGCTTGTTGATGTGGAAAAGGTTAATCACAAGTTCTATTTCCAACTGGGGTGGAATCGCTTTGTGCAAGACAATGGCTTGAAGTATGGTCAACTTCTAGTCTTCCGTTATGCTGGAAACTCAAACTTCCATGTGGACATATTTGGAATAAATACCTGCAAAAATCTGTGTGTACTTCCTGAGATGGAAGAAGCTAATGAATATGATGATGATGTATCTCTTGAGATCTTGGACGACTTTCCACCCTGTCAAAGAAAAACAGAGGAGAAATCTTTGCTTTCATGTCCTCTGCCTCGCAAGAAAAACAAAACAAGTTCTAGTGGTAGAGCAGATATCACCCCTAACTTTAGAAAGAGGGTTCCACATCTTGAGAAGTCACAAATGAAAAGGAAAAAGGCACATTGGTTCAAATCAGAAATGATAGATAATTCTGATACTGATTCTGGTGATGAAGATGATCATGATGAGGAGGATGACGACGAAAATGAAGATGATGAAGAAGAAGAAGAAGAAACTCAAGATGAAGAGGTTGAGGAGGAAGATGATGGTGATTCTGTTGGAACCCTCAACGATTCTCTACCATGCTCAAGAACAGTGGGGAAATATACATTAGCATCGAGGCTGCACCAGAGAGGGAGAAAGATTTCTAGTGCAAAAGCAAAAACCAACATCAAAACTGTTGATGGCTTGTCTAGAGAGGAAAAGATCCTAAAAGTTATAGCTCTACAAAGAGCTAATGCTTTCAAATCTAATTCTGTCAACCCTTGTTTCATGGTTTCCTTGTCTGCCACATATGCTTGTGGAGCTTTTCTGAATTTGCCACGGAGTTTTGCTGCAGTACATTTTACTAATCCGCAGCCTAGCCATGTCATCCTTTGGGTTGAGAAGAGCTCTTGGTTTGTCAAGGTCAGTTATATTGGGACTGCAACGAGATTACAGGCCGGCTGGTCTGAATTTGTGCATGTCAATAATTTGAAGATTGGTGATGCTTGTGTTTTTGTCTTGACGGATGCCATCAATTTTCAATATGATGTTGAAATATTCCGCGTTACAGATGCTGTTTGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

404

Amino Acids

46.09

Weight (kDa)

5.24

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 96	1.6e-13	B3 DNA binding domain
B3	PF02362	319 - 398	3.2e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	1191
AciI	CCGC	2 cut(s)	998, 1189
AclWI	GGATC	1 cut(s)	844
AcsI	RAATTY	2 cut(s)	958, 1097
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	3 cut(s)	108, 318, 984
AgsI	TTSAA	9 cut(s)	31, 67, 128, 226, 553, 889, 1120, 1169, 1181
AluBI	AGCT	5 cut(s)	338, 866, 878, 950, 1035
AluI	AGCT	5 cut(s)	338, 866, 878, 950, 1035
Alw21I	GWGCWC	1 cut(s)	1037
AlwI	GGATC	1 cut(s)	844
AlwNI	CAGNNNCTG	1 cut(s)	1202
AoxI	GGCC	1 cut(s)	1083
ApeKI	GCWGC	3 cut(s)	766, 977, 1000
ApoI	RAATTY	2 cut(s)	958, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
Asp700I	GAANNNNTTC	1 cut(s)	787
Asp718I	GGTACC	1 cut(s)	106
AspA2I	CCTAGG	1 cut(s)	133
AsuHPI	GGTGA	5 cut(s)	56, 472, 602, 704, 1139
AvrII	CCTAGG	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	1037
BbvI	GCAGC	3 cut(s)	753, 964, 1012
BccI	CCATC	4 cut(s)	322, 683, 821, 1166
BclI	TGATCA	2 cut(s)	46, 601
BfaI	CTAG	8 cut(s)	75, 134, 242, 462, 792, 837, 1005, 1213
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	767, 978, 1001
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	3 cut(s)	768, 979, 1002
BmiI	GGNNCC	3 cut(s)	108, 504, 706
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	4 cut(s)	767, 1120, 1144, 1189
BmuI	ACTGGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	238
BplI	GAGNNNNNCTC	4 cut(s)	69, 101, 1019, 1051
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	4 cut(s)	386, 533, 645, 715
BsaJI	CCNNGG	2 cut(s)	133, 965
Bse118I	RCCGGY	1 cut(s)	1085
Bse1I	ACTGG	2 cut(s)	88, 195
BseDI	CCNNGG	2 cut(s)	133, 965
BseGI	GGATG	3 cut(s)	622, 1014, 1159
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	88, 195
BseRI	GAGGAG	3 cut(s)	422, 626, 692
BseXI	GCAGC	3 cut(s)	753, 964, 1012
BsgI	GTGCAG	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	1191
BshFI	GGCC	1 cut(s)	1085
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	1037
BsiSI	CCGG	1 cut(s)	1086
BslFI	GGGAC	1 cut(s)	1078
BsmFI	GGGAC	1 cut(s)	1078
BsnI	GGCC	1 cut(s)	1085
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp143I	GATC	4 cut(s)	46, 369, 601, 849
BspACI	CCGC	2 cut(s)	998, 1189
BspANI	GGCC	1 cut(s)	1085
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	1191
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	108, 504, 706
BspMAI	CTGCAG	1 cut(s)	982
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	844
BspQI	GCTCTTC	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	1085
BsrI	ACTGG	2 cut(s)	88, 195
BssAI	RCCGGY	1 cut(s)	1085
BssECI	CCNNGG	2 cut(s)	133, 965
BssMI	GATC	4 cut(s)	46, 369, 601, 849
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	739, 823
Bst6I	CTCTTC	2 cut(s)	663, 1025
BstC8I	GCNNGC	1 cut(s)	1087
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	965
BstF5I	GGATG	3 cut(s)	622, 1014, 1159
BstFNI	CGCG	1 cut(s)	1191
BstKTI	GATC	4 cut(s)	49, 372, 604, 852
BstMBI	GATC	4 cut(s)	46, 369, 601, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	938, 947
BstNSI	RCATGY	1 cut(s)	1109
BstSFI	CTRYAG	1 cut(s)	978
BstUI	CGCG	1 cut(s)	1191
BstV1I	GCAGC	3 cut(s)	753, 964, 1012
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	369, 849
BstYI	RGATCY	2 cut(s)	369, 849
BsuRI	GGCC	1 cut(s)	1085
BtgI	CCRYGG	1 cut(s)	965
BtsCI	GGATG	3 cut(s)	622, 1014, 1159
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	1087
CaiI	CAGNNNCTG	1 cut(s)	1202
CciI	TCATGA	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	1085
Csp6I	GTAC	3 cut(s)	107, 317, 983
CspCI	CAANNNNNGTGG	4 cut(s)	176, 211, 720, 755
CviAII	CATG	7 cut(s)	275, 426, 605, 726, 916, 1010, 1106
CviQI	GTAC	3 cut(s)	107, 317, 983
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	4 cut(s)	48, 371, 603, 851
DpnII	GATC	4 cut(s)	46, 369, 601, 849
Eam1104I	CTCTTC	2 cut(s)	663, 1025
EarI	CTCTTC	2 cut(s)	663, 1025
Ecl136II	GAGCTC	1 cut(s)	1035
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	1037
Eco32I	GATATC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	1035
Eco57I	CTGAAG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	1035
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	7 cut(s)	278, 429, 608, 729, 919, 1013, 1109
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	7 cut(s)	274, 425, 604, 725, 915, 1009, 1105
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	2 cut(s)	46, 601
Fnu4HI	GCNGC	3 cut(s)	767, 978, 1001
FokI	GGATG	3 cut(s)	629, 1001, 1166
FriOI	GRGCYC	1 cut(s)	1037
Fsp4HI	GCNGC	3 cut(s)	767, 978, 1001
FspBI	CTAG	8 cut(s)	75, 134, 242, 462, 792, 837, 1005, 1213
GluI	GCNGC	3 cut(s)	767, 978, 1001
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	1085
HapII	CCGG	1 cut(s)	1086
Hin1II	CATG	7 cut(s)	278, 429, 608, 729, 919, 1013, 1109
HincII	GTYRAC	2 cut(s)	236, 904
HindII	GTYRAC	2 cut(s)	236, 904
HinfI	GANTC	4 cut(s)	199, 584, 695, 716
HpaII	CCGG	1 cut(s)	1086
HphI	GGTGA	5 cut(s)	56, 472, 602, 704, 1139
Hpy166II	GTNNAC	4 cut(s)	236, 280, 317, 904
Hpy188I	TCNGA	4 cut(s)	559, 577, 957, 1096
Hpy188III	TCNNGA	8 cut(s)	323, 365, 512, 605, 662, 732, 837, 1147
Hpy8I	GTNNAC	4 cut(s)	236, 280, 317, 904
Hpy99I	CGWCG	1 cut(s)	626
HpyCH4III	ACNGT	2 cut(s)	739, 823
HpyCH4V	TGCA	8 cut(s)	101, 211, 303, 769, 797, 980, 1070, 1105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	938, 947
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	278, 429, 608, 729, 919, 1013, 1109
KpnI	GGTACC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	1085
KroNI	GCCGGC	1 cut(s)	1087
Ksp22I	TGATCA	2 cut(s)	46, 601
Kzo9I	GATC	4 cut(s)	46, 369, 601, 849
LguI	GCTCTTC	1 cut(s)	1025
LmnI	GCTCC	2 cut(s)	947, 1214
Lsp1109I	GCAGC	3 cut(s)	753, 964, 1012
LweI	GCATC	4 cut(s)	767, 1120, 1144, 1189
MaeI	CTAG	8 cut(s)	75, 134, 242, 462, 792, 837, 1005, 1213
MaeIII	GTNAC	2 cut(s)	519, 1192
MalI	GATC	4 cut(s)	48, 371, 603, 851
MboI	GATC	4 cut(s)	46, 369, 601, 849
MflI	RGATCY	2 cut(s)	369, 849
MhlI	GDGCHC	1 cut(s)	1037
MluCI	AATT	7 cut(s)	62, 571, 895, 958, 1097, 1114, 1162
MmeI	TCCRAC	2 cut(s)	211, 682
MroNI	GCCGGC	1 cut(s)	1085
MroXI	GAANNNNTTC	1 cut(s)	787
MseI	TTAA	2 cut(s)	96, 168
MspI	CCGG	1 cut(s)	1086
MvnI	CGCG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	2 cut(s)	938, 947
NaeI	GCCGGC	1 cut(s)	1087
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	4 cut(s)	46, 369, 601, 849
NgoMIV	GCCGGC	1 cut(s)	1085
NlaIII	CATG	7 cut(s)	278, 429, 608, 729, 919, 1013, 1109
NlaIV	GGNNCC	3 cut(s)	108, 504, 706
NmuCI	GTSAC	1 cut(s)	519
NspI	RCATGY	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	1025
PdiI	GCCGGC	1 cut(s)	1087
PdmI	GAANNNNTTC	1 cut(s)	787
PfeI	GAWTC	4 cut(s)	199, 584, 695, 716
PkrI	GCNGC	3 cut(s)	768, 979, 1002
Psp124BI	GAGCTC	1 cut(s)	1037
PspN4I	GGNNCC	3 cut(s)	108, 504, 706
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	1 cut(s)	1202
PsuI	RGATCY	2 cut(s)	369, 849
RsaI	GTAC	3 cut(s)	108, 318, 984
RsaNI	GTAC	3 cut(s)	107, 317, 983
SacI	GAGCTC	1 cut(s)	1037
SapI	GCTCTTC	1 cut(s)	1025
SaqAI	TTAA	2 cut(s)	96, 168
SatI	GCNGC	3 cut(s)	767, 978, 1001
Sau3AI	GATC	4 cut(s)	46, 369, 601, 849
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	4 cut(s)	767, 1120, 1144, 1189
SfcI	CTRYAG	1 cut(s)	978
SmlI	CTYRAG	4 cut(s)	365, 512, 660, 730
SmoI	CTYRAG	4 cut(s)	365, 512, 660, 730
Sse9I	AATT	7 cut(s)	62, 571, 895, 958, 1097, 1114, 1162
SsiI	CCGC	2 cut(s)	998, 1189
SspI	AATATT	1 cut(s)	1185
SspMI	CTAG	8 cut(s)	75, 134, 242, 462, 792, 837, 1005, 1213
SstI	GAGCTC	1 cut(s)	1037
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	739, 823
TaqI	TCGA	1 cut(s)	761
TasI	AATT	7 cut(s)	62, 571, 895, 958, 1097, 1114, 1162
TatI	WGTACW	2 cut(s)	316, 982
TfiI	GAWTC	4 cut(s)	199, 584, 695, 716
Tru1I	TTAA	2 cut(s)	96, 168
Tru9I	TTAA	2 cut(s)	96, 168
TscAI	CASTG	1 cut(s)	744
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	3 cut(s)	766, 977, 1000
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	8 cut(s)	357, 414, 542, 609, 645, 654, 681, 904
TspGWI	ACGGA	3 cut(s)	239, 982, 1166
TspRI	CASTG	1 cut(s)	744
XapI	RAATTY	2 cut(s)	958, 1097
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	1 cut(s)	1109
XmaJI	CCTAGG	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	787
XspI	CTAG	8 cut(s)	75, 134, 242, 462, 792, 837, 1005, 1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.