Rorug02G0219900

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000593
Physical Location & Seq
Forward (+)
21208478 .. 21215429
6952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0219900.1

Sequence Viewer

Length: 2928 bp
ATGTCTGGGTTATCGTGCACGAAGCTGACCCTATTCACCGTCGCCGGAGTTGCGATTCAACTCGTCGGCCTCTCTCTCTTCGTCTTCGGCTTCTTCCCCGTCAAGCCAACTCTTCCCGGCCACAGTGGTGCGGAGAGTTTTCGAGCACCCACTTGCAATTCGATTCGAAATGAGAGCCAGAGTGATCTGCCTCCTCATCACCTCAGGTCACTCTATAAGGAACTGTCTGGAATCCCACCTGCATTTGACAGGCTAGTACTAATGGTTATTGATGGTCTTCCAGCTGAGTTTGTTCTAGGCAAGGATGGTGAGCCTCCAAGGAAGGATTTAATGGAGGCTATGCCGTATACTCAGTCATTGCTTGGAAATGGAATGGCAATCGGGTACCATGCAAAAGCCGCACCTCCAACTGTTACAATGCCTCGTTTGAAGGCTATGGTATCTGGAGCAATTGGGGGATTCCTCGATGTGGCTTTGAATTTCAACACACAGGCTATGGTGGATGACAATCTTCTGGGCCAGTTTTTCAAGATTGGTTGGAAAATGGTGATGCTCGGTGATGAAACATGGCTCAAGTTGTTTCCCGGATTATTTATGAGGCATGATGGAGTCAGCAGTTTCTTCGTCAAAGATACTGTACAAGTGGATCAAAATGTTTCTAGACATCTGGGCCATGAGCTTAGCAGAGATGACTGGAATTTTCTGATTCTTCATTATCTCGGCTTAGATCATGTTGGACATACTGGTGGGCGCAACAGTGCCTTGATGGTCCCAAAACTTACAGAGATGGATGAGGTGGTGAAGATGATTCATATGACTAATATACTGAATCAAAAGAACGATCAAGGACAGACACTCTTGGTCGTAGTAAGTGACCACGGTATGACTGATAGTGGTAATCATGGAGGGTCCTCATATGAAGAAACGGACTCTTTAGCACTATTTATTGGCCTGAAAAATGACGTCTCTGATTATTTGTCGTCTACGCATAACAATGTTGACCAGGTTGACATCGCACCAACTTTAGCTCTTCTATTAGGTGTGCCAATTCCAAAGAACAATGTTGGTGTTCTAATTCCAGAAATCTTTGGGTATTTGAGTGAAGACCAGCAGCTGAAGGCACTGGAGTTGAATTCCTGGCAATTAGTTAGATTATTGCAAGCACAAATACCTGGTTTATCATGTCGAAATCATCCCTGTGATGGCTTAGGTGGTGATCAAGAGTCCAGAGTAACTAAGTGTTATGGGAGTATAGAAAGGATGTGCTGTTGCTTATATACGAATGCTGCACTTCTCAAAAAGTCCTGGATGTCTAAGGAAGTTTCCAGGTCTAATAGTCGGAAAGACTACACCAGCACTGTTGCAGCATACTATGAGTTTCTGAGAACTGCAAGTGAGTGGCTATCACGCAGAGCAACTGATAAACCTGTAAGCCTGCTTACTCTTGGAATAGCTGCAATGCTCCTATCTTGTCTGATACTGTTAAGCCTTCTGTTTCACATCTACAAAGAAGTCTACACTAGAGAGATGCAATGCCCTTTTGACTTAAAGAGCATCATGCAGACCTGGTGTCTAGAAGAGACATTTATTTTGGGTGTTACATTGATTCTCATTATAAGTATGACATCAAGTTCTTTGGTAGAGGAAGAGCAGTATATTTGGCATTTTATGGCTTCCACATTGCATTTATTACTATTGCGTAAAGCAATACAAAGTTGTGTACACAGTTTTTCCAGGGGACAAAACAAAACAAGTGGTCTTCAAATGAGTTCCATCTGTGTGCTTCTAATTTCTGGGAGGATATTGAGAGGTTGGCACCAAGGAGGCGTGAATTGGACCAATCTTCCTGACATATCTAAGTGGCTTGAGCAGGCTGGGAACGACAATGTAAAATCAGTTCAGCTAGTTGCATGCCTTCTAGTGATCGCCTTAAGCTTATATGCTCTTGTTTTATTTGGATCAAACAGGAATATAGTTCTGGTCATTGGATTTAGCTTTCTTGTGTCTGGGTTGTTGGTTGTGCAAAATATCCTTAAACATCAGGATGGCATGTTTGCCTCATCCAGTTACAGTGCTACCACATTGGTACAGATAATTTATGCAATTCTTGGTGTTTCCACAAGTGGGACAGTTATTGCCTTGCCATGGCTTGTACCTTTTTCAATATCTGAGACTGGCTTGAGTTATGATGTGTACATGTCATCTGCTTCTAGTGAAGTTCAGAATAAGTCACTGCTGATGAAGTTAAGAGAATCTTTATATCTAATTGGGTGGGCATACATATCCTGCTGGTGTCTTCTGCAGCTTTTGCTCCAACAAACAATTAACTCAATGCCTATACTCCTGCTACTTGTGCAAACTTTGGCCAGCATGCTGTATTTTTCTTATAGTGGGTTGCACCACAACCAGTGGGTTGAGGTTTCTGCATTTTACTTTTTGGGAATGGCAGGCCATTTTGCTCTAGGAAACAGCAATTCTCTAGCTACTATTGATGTTGCCGGAGCCTTTATTGGCATCTCAAGTCACTCAACAGTACTTTCTGGAATTTTAATGTTCATTGTAACCTATGCTTCCCCAATGCTATTCATTCTTAGCATGGTGATGTATATCTCTTTGAAGGACACAAGCTATTTTGTATCTCCGTCTGATGCAGATTTAAGACAAATCCTCAAAATGATGATTGGCTTTCCTTGTCTGGTTCCACTGGGCTTGAACTCCATTCTATTGACAGCGTACACCATCGTATTGGTGTTTATGAGCAACCATCTTTTTGTCTGGAGCGTCTTTTCTCCAAAGTACATCTATGTTTGTACTACAACCATATGTGTGTATGTTGGAGTCTCTGTCATAGCTGCAACTGTAACATATGCATATTTGGTGCTGGGGTTAAGGAAAAAGAAGCAATATAAGCTTAGCCACCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

975

Amino Acids

107.88

Weight (kDa)

6.82

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosphodiest PF01663 220 - 298 2.9e-07 Type I phosphodiesterase / nucleotide pyrophosphatase
PIGO_PIGG PF19316 526 - 956 6.2e-28 GPI ethanolamine phosphate transferase membrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1616
AarI CACCTGC 1 cut(s) 247
AatII GACGTC 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 247
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 384, 1815
AccI GTMKAC 3 cut(s) 347, 983, 1515
AciI CCGC 2 cut(s) 131, 399
AclWI GGATC 2 cut(s) 654, 1966
AcoI YGGCCR 2 cut(s) 118, 2364
AcsI RAATTY 4 cut(s) 478, 697, 1132, 2544
AcuI CTGAAG 1 cut(s) 1136
AcyI GRCGYC 1 cut(s) 963
AfiI CCNNNNNNNGG 4 cut(s) 469, 1202, 2124, 2145
AflII CTTAAG 1 cut(s) 1930
AflIII ACRYGT 1 cut(s) 2196
AhdI GACNNNNNGTC 1 cut(s) 1569
AjnI CCWGG 7 cut(s) 1002, 1136, 1171, 1304, 1325, 1565, 1733
AleI CACNNNNGTG 1 cut(s) 126
Alw21I GWGCWC 2 cut(s) 20, 148
Alw26I GTCTC 4 cut(s) 970, 1574, 2165, 2845
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 2 cut(s) 654, 1966
AlwNI CAGNNNCTG 1 cut(s) 1114
AoxI GGCC 7 cut(s) 67, 118, 517, 670, 949, 2364, 2449
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 6 cut(s) 1111, 1286, 1364, 1454, 2302, 2852
ApoI RAATTY 4 cut(s) 478, 697, 1132, 2544
ArsI GACNNNNNNTTYG 2 cut(s) 1573, 1605
Asp718I GGTACC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 753
AspS9I GGNCC 5 cut(s) 517, 670, 769, 909, 1836
AsuC2I CCSGG 2 cut(s) 117, 585
AsuHPI GGTGA 8 cut(s) 28, 191, 320, 559, 569, 811, 1226, 2611
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 3 cut(s) 769, 909, 1836
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 2366
BanI GGYRCC 2 cut(s) 384, 1815
BbsI GAAGAC 5 cut(s) 76, 269, 1110, 1751, 2288
Bbv12I GWGCWC 2 cut(s) 20, 148
BbvI GCAGC 6 cut(s) 1123, 1273, 1376, 1441, 2314, 2839
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 7 cut(s) 1004, 1138, 1173, 1306, 1327, 1567, 1735
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 2 cut(s) 117, 585
BcoDI GTCTC 4 cut(s) 970, 1574, 2165, 2845
BfmI CTRYAG 1 cut(s) 2300
BfrI CTTAAG 1 cut(s) 1930
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 7 cut(s) 399, 1112, 1287, 1365, 1455, 2303, 2853
BlpI GCTNAGC 2 cut(s) 680, 2912
BlsI GCNGC 7 cut(s) 400, 1113, 1288, 1366, 1456, 2304, 2854
BmcAI AGTACT 2 cut(s) 258, 2535
Bme1390I CCNGG 9 cut(s) 117, 585, 1004, 1138, 1173, 1306, 1327, 1567, 1735
Bme18I GGWCC 3 cut(s) 769, 909, 1836
BmeRI GACNNNNNGTC 1 cut(s) 1569
BmgT120I GGNCC 5 cut(s) 517, 670, 769, 909, 1836
BmiI GGNNCC 6 cut(s) 386, 771, 910, 1817, 2503, 2700
BmrFI CCNGG 9 cut(s) 117, 585, 1004, 1138, 1173, 1306, 1327, 1567, 1735
BmrI ACTGGG 1 cut(s) 2714
BmsI GCATC 5 cut(s) 540, 1518, 1563, 2523, 2638
BmuI ACTGGG 1 cut(s) 2714
BpiI GAAGAC 5 cut(s) 76, 269, 1110, 1751, 2288
BpmI CTGGAG 3 cut(s) 465, 1145, 2797
Bpu10I CCTNAGC 1 cut(s) 1207
Bpu1102I GCTNAGC 2 cut(s) 680, 2912
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 4 cut(s) 557, 1886, 2200, 2503
BpuMI CCSGG 2 cut(s) 117, 585
BsaBI GATNNNNATC 2 cut(s) 507, 2606
BsaHI GRCGYC 1 cut(s) 963
BsaJI CCNNGG 5 cut(s) 317, 877, 1734, 1819, 2144
BsaXI ACNNNNNCTCC 2 cut(s) 2829, 2859
Bsc4I CCNNNNNNNGG 4 cut(s) 469, 1202, 2124, 2145
Bse1I ACTGG 8 cut(s) 520, 698, 748, 1128, 2064, 2179, 2407, 2709
Bse21I CCTNAGG 1 cut(s) 203
Bse3DI GCAATG 4 cut(s) 356, 1464, 1538, 1679
Bse8I GATNNNNATC 2 cut(s) 507, 2606
BseBI CCWGG 7 cut(s) 1004, 1138, 1173, 1306, 1327, 1567, 1735
BseDI CCNNGG 5 cut(s) 317, 877, 1734, 1819, 2144
BseGI GGATG 8 cut(s) 310, 508, 796, 1192, 1266, 1314, 2050, 2060
BseJI GATNNNNATC 2 cut(s) 507, 2606
BseLI CCNNNNNNNGG 4 cut(s) 469, 1202, 2124, 2145
BseMI GCAATG 4 cut(s) 356, 1464, 1538, 1679
BseMII CTCAG 5 cut(s) 217, 276, 365, 1373, 2160
BseNI ACTGG 8 cut(s) 520, 698, 748, 1128, 2064, 2179, 2407, 2709
BseRI GAGGAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 6 cut(s) 1123, 1273, 1376, 1441, 2314, 2839
BseYI CCCAGC 2 cut(s) 1874, 2881
BsgI GTGCAG 1 cut(s) 1272
BshFI GGCC 7 cut(s) 69, 120, 519, 672, 951, 2366, 2451
BshNI GGYRCC 2 cut(s) 384, 1815
BsiHKAI GWGCWC 2 cut(s) 20, 148
BsiSI CCGG 4 cut(s) 45, 117, 585, 2499
BslFI GGGAC 3 cut(s) 755, 1752, 2140
BslI CCNNNNNNNGG 4 cut(s) 469, 1202, 2124, 2145
BsmAI GTCTC 4 cut(s) 970, 1574, 2165, 2845
BsmBI CGTCTC 1 cut(s) 970
BsmFI GGGAC 3 cut(s) 755, 1752, 2140
BsmI GAATGC 1 cut(s) 1288
BsnI GGCC 7 cut(s) 69, 120, 519, 672, 951, 2366, 2451
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 20, 148
Bsp1407I TGTACA 3 cut(s) 637, 1720, 2193
Bsp143I GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
Bsp1720I GCTNAGC 2 cut(s) 680, 2912
Bsp19I CCATGG 1 cut(s) 2144
BspACI CCGC 2 cut(s) 131, 399
BspANI GGCC 7 cut(s) 69, 120, 519, 672, 951, 2366, 2451
BspCNI CTCAG 5 cut(s) 216, 277, 364, 1374, 2161
BspLI GGNNCC 6 cut(s) 386, 771, 910, 1817, 2503, 2700
BspMAI CTGCAG 1 cut(s) 2304
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 2 cut(s) 654, 1966
BspQI GCTCTTC 2 cut(s) 1035, 1641
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 2 cut(s) 384, 1815
BspTI CTTAAG 1 cut(s) 1930
BsrDI GCAATG 4 cut(s) 356, 1464, 1538, 1679
BsrGI TGTACA 3 cut(s) 637, 1720, 2193
BsrI ACTGG 8 cut(s) 520, 698, 748, 1128, 2064, 2179, 2407, 2709
BssECI CCNNGG 5 cut(s) 317, 877, 1734, 1819, 2144
BssMI GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
BssNAI GTATAC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 963
BssT1I CCWWGG 3 cut(s) 317, 1819, 2144
Bst1107I GTATAC 1 cut(s) 348
Bst2UI CCWGG 7 cut(s) 1004, 1138, 1173, 1306, 1327, 1567, 1735
Bst6I CTCTTC 5 cut(s) 83, 117, 1035, 1572, 1641
BstACI GRCGYC 1 cut(s) 963
BstAFI CTTAAG 1 cut(s) 1930
BstAPI GCANNNNNTGC 1 cut(s) 2308
BstAUI TGTACA 3 cut(s) 637, 1720, 2193
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 7 cut(s) 1161, 1436, 1872, 1912, 2368, 2372, 2449
BstDSI CCRYGG 2 cut(s) 877, 2144
BstF5I GGATG 8 cut(s) 310, 508, 796, 1192, 1266, 1314, 2050, 2060
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 7 cut(s) 187, 649, 730, 844, 1219, 1926, 1961
BstMAI GTCTC 4 cut(s) 970, 1574, 2165, 2845
BstMBI GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
BstMWI GCNNNNNNNGC 5 cut(s) 50, 398, 2308, 2353, 2908
BstNI CCWGG 7 cut(s) 1004, 1138, 1173, 1306, 1327, 1567, 1735
BstNSI RCATGY 4 cut(s) 1914, 2053, 2200, 2374
BstSCI CCNGG 9 cut(s) 115, 583, 1002, 1136, 1171, 1304, 1325, 1565, 1733
BstSFI CTRYAG 1 cut(s) 2300
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 6 cut(s) 1123, 1273, 1376, 1441, 2314, 2839
BstV2I GAAGAC 5 cut(s) 76, 269, 1110, 1751, 2288
BstXI CCANNNNNNTGG 1 cut(s) 2746
BstZ17I GTATAC 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 7 cut(s) 69, 120, 519, 672, 951, 2366, 2451
BtgI CCRYGG 2 cut(s) 877, 2144
BtgZI GCGATG 1 cut(s) 997
BtsCI GGATG 8 cut(s) 310, 508, 796, 1192, 1266, 1314, 2050, 2060
BtsI GCAGTG 1 cut(s) 2231
BtsIMutI CAGTG 8 cut(s) 130, 763, 1121, 1356, 2077, 2231, 2414, 2702
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 7 cut(s) 1161, 1436, 1872, 1912, 2368, 2372, 2449
CaiI CAGNNNCTG 1 cut(s) 1114
CfoI GCGC 1 cut(s) 753
Cfr13I GGNCC 5 cut(s) 517, 670, 769, 909, 1836
CseI GACGC 1 cut(s) 2770
CsiI ACCWGGT 3 cut(s) 1002, 1171, 1565
CspCI CAANNNNNGTGG 4 cut(s) 1735, 1770, 2691, 2726
DpnI GATC 7 cut(s) 186, 648, 729, 843, 1218, 1925, 1960
DpnII GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
DriI GACNNNNNGTC 1 cut(s) 1569
EaeI YGGCCR 2 cut(s) 118, 2364
Eam1104I CTCTTC 5 cut(s) 83, 117, 1035, 1572, 1641
Eam1105I GACNNNNNGTC 1 cut(s) 1569
EarI CTCTTC 5 cut(s) 83, 117, 1035, 1572, 1641
Eco130I CCWWGG 3 cut(s) 317, 1819, 2144
Eco47I GGWCC 3 cut(s) 769, 909, 1836
Eco57I CTGAAG 1 cut(s) 1136
Eco81I CCTNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 7 cut(s) 1002, 1136, 1171, 1304, 1325, 1565, 1733
EcoT14I CCWWGG 3 cut(s) 317, 1819, 2144
EcoT22I ATGCAT 1 cut(s) 2872
ErhI CCWWGG 3 cut(s) 317, 1819, 2144
Esp3I CGTCTC 1 cut(s) 970
FalI AAGNNNNNCTT 2 cut(s) 2239, 2271
FaqI GGGAC 3 cut(s) 755, 1752, 2140
FauNDI CATATG 4 cut(s) 813, 916, 2822, 2866
FbaI TGATCA 1 cut(s) 1216
FblI GTMKAC 3 cut(s) 347, 983, 1515
Fnu4HI GCNGC 7 cut(s) 399, 1112, 1287, 1365, 1455, 2303, 2853
FokI GGATG 8 cut(s) 317, 515, 803, 1179, 1273, 1321, 2047, 2057
Fsp4HI GCNGC 7 cut(s) 399, 1112, 1287, 1365, 1455, 2303, 2853
GlaI GCGC 1 cut(s) 752
GluI GCNGC 7 cut(s) 399, 1112, 1287, 1365, 1455, 2303, 2853
GsaI CCCAGC 2 cut(s) 1878, 2885
GsuI CTGGAG 3 cut(s) 465, 1145, 2797
HaeIII GGCC 7 cut(s) 69, 120, 519, 672, 951, 2366, 2451
HapII CCGG 4 cut(s) 45, 117, 585, 2499
HgaI GACGC 1 cut(s) 2770
HhaI GCGC 1 cut(s) 753
Hin1I GRCGYC 1 cut(s) 963
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HincII GTYRAC 2 cut(s) 1000, 1009
HindII GTYRAC 2 cut(s) 1000, 1009
HindIII AAGCTT 2 cut(s) 1933, 2909
HpaII CCGG 4 cut(s) 45, 117, 585, 2499
HphI GGTGA 8 cut(s) 28, 191, 320, 559, 569, 811, 1226, 2611
Hpy188I TCNGA 8 cut(s) 705, 970, 1341, 1383, 1476, 2170, 2223, 2647
Hpy99I CGWCG 2 cut(s) 44, 68
HpyAV CCTTC 6 cut(s) 316, 424, 1111, 1499, 1925, 2611
HpyCH4IV ACGT 1 cut(s) 963
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 398, 2308, 2353, 2908
HpySE526I ACGT 1 cut(s) 963
Hsp92I GRCGYC 1 cut(s) 963
HspAI GCGC 1 cut(s) 751
KpnI GGTACC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 1216
Kzo9I GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
LguI GCTCTTC 2 cut(s) 1035, 1641
LmnI GCTCC 5 cut(s) 446, 1467, 2316, 2501, 2778
Lsp1109I GCAGC 6 cut(s) 1123, 1273, 1376, 1441, 2314, 2839
LweI GCATC 5 cut(s) 540, 1518, 1563, 2523, 2638
MabI ACCWGGT 3 cut(s) 1002, 1171, 1565
MaeII ACGT 1 cut(s) 963
MalI GATC 7 cut(s) 186, 648, 729, 843, 1218, 1925, 1960
MboI GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 20, 148
MlsI TGGCCA 1 cut(s) 2366
MluNI TGGCCA 1 cut(s) 2366
MlyI GAGTC 4 cut(s) 618, 923, 1232, 2847
MmeI TCCRAC 6 cut(s) 431, 518, 715, 1319, 2338, 2815
Mox20I TGGCCA 1 cut(s) 2366
Mph1103I ATGCAT 1 cut(s) 2872
MscI TGGCCA 1 cut(s) 2366
MslI CAYNNNNRTG 8 cut(s) 126, 744, 993, 1197, 1778, 2043, 2600, 2825
Msp20I TGGCCA 1 cut(s) 2366
MspA1I CMGCKG 2 cut(s) 284, 1114
MspCI CTTAAG 1 cut(s) 1930
MspI CCGG 4 cut(s) 45, 117, 585, 2499
MspR9I CCNGG 9 cut(s) 117, 585, 1004, 1138, 1173, 1306, 1327, 1567, 1735
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 1288
MvaI CCWGG 7 cut(s) 1004, 1138, 1173, 1306, 1327, 1567, 1735
MwoI GCNNNNNNNGC 5 cut(s) 50, 398, 2308, 2353, 2908
NciI CCSGG 2 cut(s) 117, 585
NcoI CCATGG 1 cut(s) 2144
NdeI CATATG 4 cut(s) 813, 916, 2822, 2866
NdeII GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
NlaIV GGNNCC 6 cut(s) 386, 771, 910, 1817, 2503, 2700
NmeAIII GCCGAG 1 cut(s) 699
NmuCI GTSAC 4 cut(s) 207, 872, 2229, 2522
NsiI ATGCAT 1 cut(s) 2872
NspI RCATGY 4 cut(s) 1914, 2053, 2200, 2374
NspV TTCGAA 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 126
PaeI GCATGC 2 cut(s) 1914, 2374
PaqCI CACCTGC 1 cut(s) 247
PciI ACATGT 1 cut(s) 2196
PciSI GCTCTTC 2 cut(s) 1035, 1641
PctI GAATGC 1 cut(s) 1288
PfeI GAWTC 9 cut(s) 55, 163, 231, 459, 706, 808, 829, 1606, 2252
PfoI TCCNGGA 2 cut(s) 583, 1304
PkrI GCNGC 7 cut(s) 400, 1113, 1288, 1366, 1456, 2304, 2854
PleI GAGTC 4 cut(s) 617, 923, 1231, 2846
PpsI GAGTC 4 cut(s) 617, 923, 1231, 2846
PpuMI RGGWCCY 1 cut(s) 909
PscI ACATGT 1 cut(s) 2196
PsiI TTATAA 1 cut(s) 1616
Psp5II RGGWCCY 1 cut(s) 909
Psp6I CCWGG 7 cut(s) 1002, 1136, 1171, 1304, 1325, 1565, 1733
PspFI CCCAGC 2 cut(s) 1874, 2881
PspGI CCWGG 7 cut(s) 1002, 1136, 1171, 1304, 1325, 1565, 1733
PspN4I GGNNCC 6 cut(s) 386, 771, 910, 1817, 2503, 2700
PspPI GGNCC 5 cut(s) 517, 670, 769, 909, 1836
PspPPI RGGWCCY 1 cut(s) 909
PsrI GAACNNNNNNTAC 2 cut(s) 1881, 1913
PstI CTGCAG 1 cut(s) 2304
PstNI CAGNNNCTG 1 cut(s) 1114
PvuII CAGCTG 2 cut(s) 284, 1114
RseI CAYNNNNRTG 8 cut(s) 126, 744, 993, 1197, 1778, 2043, 2600, 2825
SapI GCTCTTC 2 cut(s) 1035, 1641
SatI GCNGC 7 cut(s) 399, 1112, 1287, 1365, 1455, 2303, 2853
Sau3AI GATC 7 cut(s) 184, 646, 727, 841, 1216, 1923, 1958
Sau96I GGNCC 5 cut(s) 517, 670, 769, 909, 1836
ScaI AGTACT 2 cut(s) 258, 2535
SchI GAGTC 4 cut(s) 618, 923, 1232, 2847
ScrFI CCNGG 9 cut(s) 117, 585, 1004, 1138, 1173, 1306, 1327, 1567, 1735
SduI GDGCHC 2 cut(s) 20, 148
SexAI ACCWGGT 3 cut(s) 1002, 1171, 1565
SfaNI GCATC 5 cut(s) 540, 1518, 1563, 2523, 2638
SfcI CTRYAG 1 cut(s) 2300
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 3 cut(s) 769, 909, 1836
SmiMI CAYNNNNRTG 8 cut(s) 126, 744, 993, 1197, 1778, 2043, 2600, 2825
SmlI CTYRAG 5 cut(s) 572, 1865, 1930, 2179, 2518
SmoI CTYRAG 5 cut(s) 572, 1865, 1930, 2179, 2518
SphI GCATGC 2 cut(s) 1914, 2374
SsiI CCGC 2 cut(s) 131, 399
StyD4I CCNGG 9 cut(s) 115, 583, 1002, 1136, 1171, 1304, 1325, 1565, 1733
StyI CCWWGG 3 cut(s) 317, 1819, 2144
TaiI ACGT 1 cut(s) 966
TaqI TCGA 5 cut(s) 142, 161, 166, 465, 1186
TatI WGTACW 7 cut(s) 256, 637, 1720, 2193, 2533, 2796, 2810
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 9 cut(s) 55, 163, 231, 459, 706, 808, 829, 1606, 2252
TscAI CASTG 8 cut(s) 130, 763, 1128, 1363, 2077, 2238, 2414, 2709
TseFI GTSAC 4 cut(s) 207, 872, 2229, 2522
TseI GCWGC 6 cut(s) 1111, 1286, 1364, 1454, 2302, 2852
Tsp45I GTSAC 4 cut(s) 207, 872, 2229, 2522
TspDTI ATGAA 7 cut(s) 576, 701, 800, 933, 2255, 2545, 2575
TspGWI ACGGA 2 cut(s) 941, 2631
TspRI CASTG 8 cut(s) 130, 763, 1128, 1363, 2077, 2238, 2414, 2709
Vha464I CTTAAG 1 cut(s) 1930
VneI GTGCAC 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 769, 909, 1836
XapI RAATTY 4 cut(s) 478, 697, 1132, 2544
XbaI TCTAGA 2 cut(s) 659, 1573
XceI RCATGY 4 cut(s) 1914, 2053, 2200, 2374
XmiI GTMKAC 3 cut(s) 347, 983, 1515
ZraI GACGTC 1 cut(s) 964
ZrmI AGTACT 2 cut(s) 258, 2535
Zsp2I ATGCAT 1 cut(s) 2872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.