Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

13417383 .. 13418275

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCACCAAGAAGAAAACTACCCTCTTTTTTCAAAATTGTTCCGGCTGATCAGTTCACTAACAAGTTGAAAATCCCAAGAGAATTTATCCAGCATTTCCATGGAAACATACCTCACCAGTGCCGTCTTCAAACGGCAGCCCGAACTTGGGCTGTCGATGTGGAAGAGGTTAATAACAAGTTCTATTTCCAAAAGGGGTGGAATGAATTTGTGCAAGACAATGGCTTAAAGTATGGTGAACTTCTAGTCTTCCATTATGCTGGAAACTCAGACTTCCATGTGGATATCTTCGGAAAAAATACCTGTGGAAAGCTGTTTGTACTGCCTGAGATAGAAGAAGCTAATGAAGAAGATGATGATGTATCTCTTCAAATCTCAGACGACTCTCCAGTGTCAAGTCCTCCACCACAAAAGAAATACAAAACAAGTTCGAGTGCTAAAGGACAGATGAAAAACAAAGAGGCACATTGGTCCAAATCAAAAATGAAAAGTAGGGTATTAAGTAGTTATTGTTGTACCAAGTTATATTTGTTTACTGCCATTTCTGTTTCTAGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

186

Amino Acids

21.33

Weight (kDa)

8.8

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 99	7.9e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	83, 206
AfaI	GTAC	2 cut(s)	321, 517
AfiI	CCNNNNNNNGG	2 cut(s)	147, 148
AgsI	TTSAA	4 cut(s)	34, 70, 131, 371
AluBI	AGCT	2 cut(s)	313, 341
AluI	AGCT	2 cut(s)	313, 341
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	83, 206
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	107, 248
AvaII	GGWCC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	119, 241
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	108, 150
BclI	TGATCA	1 cut(s)	49
BfaI	CTAG	2 cut(s)	245, 552
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	119, 241
BpmI	CTGGAG	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 148
Bse1I	ACTGG	2 cut(s)	118, 389
BseDI	CCNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	147, 148
BseMII	CTCAG	3 cut(s)	282, 318, 390
BseNI	ACTGG	2 cut(s)	118, 389
BseXI	GCAGC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	147, 148
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	100
BspCNI	CTCAG	3 cut(s)	281, 319, 389
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	118, 389
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	159, 372
BstDEI	CTNAG	3 cut(s)	268, 327, 376
BstDSI	CCRYGG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	2 cut(s)	119, 241
BstXI	CCANNNNNNTGG	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	125, 396
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	320, 516
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	2 cut(s)	101, 278
CviJI	RGCY	6 cut(s)	47, 140, 152, 225, 313, 341
CviKI_1	RGCY	6 cut(s)	47, 140, 152, 225, 313, 341
CviQI	GTAC	2 cut(s)	320, 516
DdeI	CTNAG	3 cut(s)	268, 327, 376
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	159, 372
EarI	CTCTTC	2 cut(s)	159, 372
Eco130I	CCWWGG	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	104, 281
FaiI	YATR	7 cut(s)	102, 110, 234, 258, 279, 526, 557
FatI	CATG	2 cut(s)	100, 277
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	2 cut(s)	245, 552
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	104, 281
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	107, 248
Hpy166II	GTNNAC	3 cut(s)	57, 239, 534
Hpy188I	TCNGA	3 cut(s)	271, 293, 379
Hpy8I	GTNNAC	3 cut(s)	57, 239, 534
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	268, 327, 376
Hsp92II	CATG	2 cut(s)	104, 281
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	57, 104, 131, 246, 316, 339, 402
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	245, 552
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	9 cut(s)	24, 119, 176, 241, 280, 347, 359, 359, 362
MluCI	AATT	3 cut(s)	36, 83, 206
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	34, 123, 160, 411, 454
MseI	TTAA	3 cut(s)	171, 227, 500
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	104, 281
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	471
RsaI	GTAC	2 cut(s)	321, 517
RsaNI	GTAC	2 cut(s)	320, 516
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	171, 227, 500
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	377
SetI	ASST	5 cut(s)	115, 171, 305, 315, 343
SinI	GGWCC	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	36, 83, 206
SspMI	CTAG	2 cut(s)	245, 552
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	2 cut(s)	156, 431
TasI	AATT	3 cut(s)	36, 83, 206
TatI	WGTACW	1 cut(s)	319
Tru1I	TTAA	3 cut(s)	171, 227, 500
Tru9I	TTAA	3 cut(s)	171, 227, 500
TscAI	CASTG	2 cut(s)	125, 396
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	4 cut(s)	219, 360, 464, 500
TspRI	CASTG	2 cut(s)	125, 396
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	2 cut(s)	83, 206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	2 cut(s)	245, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.