Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

23577911 .. 23580265

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAGAAGCTGATGAAGATGATGATCCGTCTGTTGAAATATTGGATGATGTTGCACCATACCCAACAAGTAGAGGAGAGAAATATCAGATATCAAGTCCTCTGCCTCACATTGATTATGATCTTGACATTCAAGATAACATATATGATGAGAATAAGCATGAAAGTTATAAAAATGAAGAAGATGAAAATGAGGAAGATGTTGATAATGAAGATGAGGATGAACATGAAAGTGAGGAAGAAGATGAAGATGAAAGTCTAAGTGAAGAAGAAAATGAAACTGCGGAAGATGTTGATTTTGGAGATGAGGATCAAAATGAAAGTGAAGAAGAAAATGAAAGTGAAGATGAGGATCACAATGATGATGATGATGATGGTGGTGACAAGTACGACGACTCTATTGAAACCTTGAGCGAAAAACCACCATGCTCGAAAACAAGAGGTAAATCTCCATTAGAATTGCAGCTCCGCAAGAGCAAGAGAACATGTTCTAATACTAAAGCTCAAAGCAATATTAAAGATGCAGGTGGCTCTTCCAGAACTGAAAGTTTCCGAAAACCTGAGATACCTAAGAAGATGAATCTAGCTATGGAAGTTGGAAAGCATAATGCTCTTCAGAGAGCTCTTGATTTTAAATCTAAATCTGTAAATCCTTGTCTGGTGCTTCCCATGCGTGCCTCTTATGCCCGTGGAAGTTACTTGAATTTTCCATTTGACTTTGCCAAGAGATATCTTAGGAAGCAGCCTAGTAACGTCACTTTTCTGGCCGATGGTGTATCTTGGCCTGTCAAGTTCCATTATCCCCAAAACCAAACCAGAGCAGTGGCTGGGTGGTCTGCATTTGCGCGAGTCAATAAATTGAAGGTGAGTGATGTGTGTGTCTTTGTGTTGACTGACGACATCAAATTTGTATTTAGTGTCGTGATTTTCCGCATTACAGGTGCTGCAAATTGCACCTTACCATCACCAGGACGAAGGCAAACTGCCACAGCTCAATTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

335

Amino Acids

37.93

Weight (kDa)

4.4

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	227 - 311	1.1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccII	CGCG	1 cut(s)	847
AciI	CCGC	3 cut(s)	284, 469, 931
AclWI	GGATC	3 cut(s)	20, 318, 360
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	2 cut(s)	703, 905
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	968
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	38, 134, 404, 703, 862, 1000
AjnI	CCWGG	1 cut(s)	967
AluBI	AGCT	6 cut(s)	11, 466, 503, 587, 623, 992
AluI	AGCT	6 cut(s)	11, 466, 503, 587, 623, 992
Alw21I	GWGCWC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	20, 318, 360
AlwNI	CAGNNNCTG	2 cut(s)	827, 944
AoxI	GGCC	2 cut(s)	765, 782
ApeKI	GCWGC	3 cut(s)	463, 742, 944
ApoI	RAATTY	2 cut(s)	703, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
Asp700I	GAANNNNTTC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	392, 877, 957
BanII	GRGCYC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	475, 754, 931
BccI	CCATC	3 cut(s)	368, 764, 970
BciT130I	CCWGG	1 cut(s)	969
BfaI	CTAG	2 cut(s)	584, 747
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	3 cut(s)	464, 743, 945
BlsI	GCNGC	3 cut(s)	465, 744, 946
Bme1390I	CCNGG	1 cut(s)	969
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	430
BsaBI	GATNNNNATC	4 cut(s)	24, 120, 309, 351
BsaJI	CCNNGG	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse8I	GATNNNNATC	4 cut(s)	24, 120, 309, 351
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	2 cut(s)	52, 226
BseJI	GATNNNNATC	4 cut(s)	24, 120, 309, 351
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	475, 754, 931
BseYI	CCCAGC	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	767, 784
BsiHKAI	GWGCWC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	968
BsnI	GGCC	2 cut(s)	767, 784
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	25, 121, 310, 352
BspACI	CCGC	3 cut(s)	284, 469, 931
BspANI	GGCC	2 cut(s)	767, 784
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	20, 318, 360
BspQI	GCTCTTC	2 cut(s)	538, 618
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	4 cut(s)	25, 121, 310, 352
Bst2UI	CCWGG	1 cut(s)	969
Bst6I	CTCTTC	2 cut(s)	538, 618
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	4 cut(s)	260, 561, 570, 734
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	52, 226
BstFNI	CGCG	1 cut(s)	847
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	4 cut(s)	28, 124, 313, 355
BstMBI	GATC	4 cut(s)	25, 121, 310, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	670, 683
BstNI	CCWGG	1 cut(s)	969
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	967
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	3 cut(s)	475, 754, 931
BstXI	CCANNNNNNTGG	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	767, 784
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	52, 226
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	2 cut(s)	827, 944
CfoI	GCGC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	5 cut(s)	161, 227, 426, 486, 670
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	4 cut(s)	260, 561, 570, 734
DpnI	GATC	4 cut(s)	27, 123, 312, 354
DpnII	GATC	4 cut(s)	25, 121, 310, 352
DraI	TTTAAA	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	2 cut(s)	538, 618
EarI	CTCTTC	2 cut(s)	538, 618
Ecl136II	GAGCTC	1 cut(s)	623
Eco24I	GRGCYC	1 cut(s)	625
Eco32I	GATATC	2 cut(s)	93, 731
Eco53kI	GAGCTC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	967
EcoRV	GATATC	2 cut(s)	93, 731
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	5 cut(s)	164, 230, 429, 489, 673
FatI	CATG	5 cut(s)	160, 226, 425, 485, 669
Fnu4HI	GCNGC	3 cut(s)	464, 743, 945
FokI	GGATG	2 cut(s)	59, 233
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	3 cut(s)	464, 743, 945
FspBI	CTAG	2 cut(s)	584, 747
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	3 cut(s)	464, 743, 945
GsaI	CCCAGC	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	767, 784
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	5 cut(s)	164, 230, 429, 489, 673
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	3 cut(s)	395, 580, 849
HphI	GGTGA	3 cut(s)	392, 877, 957
Hpy166II	GTNNAC	1 cut(s)	891
Hpy188I	TCNGA	3 cut(s)	90, 554, 618
Hpy188III	TCNNGA	5 cut(s)	125, 134, 537, 626, 922
Hpy8I	GTNNAC	1 cut(s)	891
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	856, 969
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	56, 463, 524, 839, 947, 954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	670, 683
HpyF3I	CTNAG	4 cut(s)	260, 561, 570, 734
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	5 cut(s)	164, 230, 429, 489, 673
HspAI	GCGC	1 cut(s)	845
Kzo9I	GATC	4 cut(s)	25, 121, 310, 352
LguI	GCTCTTC	2 cut(s)	538, 618
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	3 cut(s)	475, 754, 931
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	584, 747
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	4 cut(s)	380, 695, 749, 754
MalI	GATC	4 cut(s)	27, 123, 312, 354
MboI	GATC	4 cut(s)	25, 121, 310, 352
MfeI	CAATTG	1 cut(s)	995
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	6 cut(s)	458, 703, 857, 905, 949, 995
MlyI	GAGTC	2 cut(s)	389, 858
MmeI	TCCRAC	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	2 cut(s)	516, 633
MslI	CAYNNNNRTG	2 cut(s)	231, 360
MspR9I	CCNGG	1 cut(s)	969
MunI	CAATTG	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	2 cut(s)	670, 683
NdeII	GATC	4 cut(s)	25, 121, 310, 352
NlaIII	CATG	5 cut(s)	164, 230, 429, 489, 673
NmuCI	GTSAC	2 cut(s)	380, 754
NspI	RCATGY	1 cut(s)	489
PaqCI	CACCTGC	1 cut(s)	515
PciI	ACATGT	1 cut(s)	485
PciSI	GCTCTTC	2 cut(s)	538, 618
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	465, 744, 946
PleI	GAGTC	2 cut(s)	389, 857
PpsI	GAGTC	2 cut(s)	389, 857
PscI	ACATGT	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	967
PstNI	CAGNNNCTG	2 cut(s)	827, 944
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	231, 360
SacI	GAGCTC	1 cut(s)	625
SapI	GCTCTTC	2 cut(s)	538, 618
SaqAI	TTAA	2 cut(s)	516, 633
SatI	GCNGC	3 cut(s)	464, 743, 945
Sau3AI	GATC	4 cut(s)	25, 121, 310, 352
SchI	GAGTC	2 cut(s)	389, 858
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	231, 360
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	6 cut(s)	458, 703, 857, 905, 949, 995
SsiI	CCGC	3 cut(s)	284, 469, 931
SspI	AATATT	2 cut(s)	42, 514
SspMI	CTAG	2 cut(s)	584, 747
SstI	GAGCTC	1 cut(s)	625
StyD4I	CCNGG	1 cut(s)	967
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	1 cut(s)	431
TasI	AATT	6 cut(s)	458, 703, 857, 905, 949, 995
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	516, 633
Tru9I	TTAA	2 cut(s)	516, 633
TscAI	CASTG	1 cut(s)	828
TseFI	GTSAC	2 cut(s)	380, 754
TseI	GCWGC	3 cut(s)	463, 742, 944
Tsp45I	GTSAC	2 cut(s)	380, 754
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	828
XapI	RAATTY	2 cut(s)	703, 905
XceI	RCATGY	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	2 cut(s)	584, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.