Rh2BG170200

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000593
Physical Location & Seq
Reverse (-)
15028734 .. 15031710
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG170200.1

Sequence Viewer

Length: 711 bp
ATGGCACCAAGAAGAAAACTACCCTCTTTTTTCAAAATTGTTCCGGGTGATCAGTTCACTAACAAGTTGAAAATCCCAAGAGAATTTCTCCAGCATTTCCATGGTAACATACCTCACCAGTGCCGTCTTCAAACGGCAGCCCGAACTTGGGCTGTCGATGTGGAAGAGGTTAATAACAAGTTCTATTTCCAAAAGGGGTGGAATGAATTTGTGCAAGACAATGGCTTAAAGTATGGTGAACTTCTAGTCTTCCATTATGCTGGAAACTCAGACTTCCATGTGGATATCTTTGGAAAAAATACCTGTGGAAAGCTGTTTGTAATGCCTGAGATAGAAGAAGCTAATGAAGAAGATGATGATGTATCTCTTCAAATCTCAGACGACTCTCCAGAGTCAAGTCCTCCACCACAAAAGAAATACAAAACAAGTTCGAGTGATAAAGGACAGATGAAAAACAAAGAAGCACATTGGTCCAAATCAAAAATGAAAAAGAAAGATAAAGGAGGCACCTCTAGCACACAAAGATTCACAAGACAAAAACTTGAGCCACGGTGGAGAGCTCATGTGAGAGCTGAAGCATTCAAATTCAAAAACCCTTCTGCTTTCTTGGTTTCCATGAAGCCCTCCTACATCAAGTATAAATTTGTGGTAAGCCCTCCTGAACTCTTGCAAACTTGTATATATATAATTATATATTGTTCGGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

236

Amino Acids

27.4

Weight (kDa)

9.21

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 10 - 99 5e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 506
AcsI RAATTY 4 cut(s) 83, 206, 584, 641
AcuI CTGAAG 1 cut(s) 594
AfiI CCNNNNNNNGG 2 cut(s) 147, 148
AgsI TTSAA 6 cut(s) 34, 70, 131, 371, 583, 589
AluBI AGCT 4 cut(s) 313, 341, 560, 572
AluI AGCT 4 cut(s) 313, 341, 560, 572
Alw21I GWGCWC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 4 cut(s) 83, 206, 584, 641
AspS9I GGNCC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 3 cut(s) 59, 107, 248
AvaII GGWCC 1 cut(s) 471
BanI GGYRCC 2 cut(s) 4, 506
BanII GRGCYC 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BbsI GAAGAC 2 cut(s) 119, 241
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 108, 150
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 2 cut(s) 245, 513
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 6, 508
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 119, 241
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpmI CTGGAG 2 cut(s) 74, 372
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 100, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 148
Bse1I ACTGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 100, 548
BseLI CCNNNNNNNGG 2 cut(s) 147, 148
BseMII CTCAG 3 cut(s) 282, 318, 390
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 149
BshNI GGYRCC 2 cut(s) 4, 506
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 147, 148
BsmI GAATGC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 100
BspCNI CTCAG 3 cut(s) 281, 319, 389
BspLI GGNNCC 2 cut(s) 6, 508
BspT107I GGYRCC 2 cut(s) 4, 506
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 100, 548
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 159, 372
BstDEI CTNAG 3 cut(s) 268, 327, 376
BstDSI CCRYGG 2 cut(s) 100, 548
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 119, 241
BstXI CCANNNNNNTGG 1 cut(s) 260
BtgI CCRYGG 2 cut(s) 100, 548
BtsIMutI CAGTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 4 cut(s) 101, 278, 563, 616
DdeI CTNAG 3 cut(s) 268, 327, 376
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 159, 372
EarI CTCTTC 2 cut(s) 159, 372
Ecl136II GAGCTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 562
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 560
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 104, 281, 566, 619
FatI CATG 4 cut(s) 100, 277, 562, 615
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 245, 513
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 2 cut(s) 74, 372
HapII CCGG 1 cut(s) 44
Hin1II CATG 4 cut(s) 104, 281, 566, 619
HinfI GANTC 3 cut(s) 383, 392, 525
HpaII CCGG 1 cut(s) 44
HphI GGTGA 3 cut(s) 59, 107, 248
Hpy166II GTNNAC 2 cut(s) 57, 239
Hpy188I TCNGA 3 cut(s) 271, 379, 703
Hpy188III TCNNGA 2 cut(s) 389, 659
Hpy8I GTNNAC 2 cut(s) 57, 239
HpyAV CCTTC 1 cut(s) 606
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4V TGCA 2 cut(s) 214, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 513
HpyF3I CTNAG 3 cut(s) 268, 327, 376
Hsp92II CATG 4 cut(s) 104, 281, 566, 619
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 57, 104, 131, 246, 316, 339, 402, 672
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 2 cut(s) 245, 513
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 8 cut(s) 24, 119, 176, 241, 347, 359, 359, 362
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 6 cut(s) 36, 83, 206, 584, 641, 687
MlyI GAGTC 2 cut(s) 377, 401
MnlI CCTC 8 cut(s) 34, 123, 160, 411, 497, 520, 634, 666
MseI TTAA 2 cut(s) 171, 227
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 513
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 100
NdeII GATC 1 cut(s) 49
NlaIII CATG 4 cut(s) 104, 281, 566, 619
NlaIV GGNNCC 2 cut(s) 6, 508
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 525
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 2 cut(s) 377, 400
PpsI GAGTC 2 cut(s) 377, 400
Psp124BI GAGCTC 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 6, 508
PspPI GGNCC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 2 cut(s) 171, 227
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 2 cut(s) 377, 401
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 562
SetI ASST 8 cut(s) 115, 171, 305, 315, 343, 512, 562, 574
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 6 cut(s) 36, 83, 206, 584, 641, 687
SspMI CTAG 2 cut(s) 245, 513
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 156, 431
TasI AATT 6 cut(s) 36, 83, 206, 584, 641, 687
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 2 cut(s) 171, 227
Tru9I TTAA 2 cut(s) 171, 227
TscAI CASTG 1 cut(s) 125
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 5 cut(s) 219, 360, 464, 500, 632
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 4 cut(s) 83, 206, 584, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 2 cut(s) 245, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.