pycom02g12600

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000593
Physical Location & Seq
Reverse (-)
9229187 .. 9231052
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12600.5

Sequence Viewer

Length: 1203 bp
ATGAATTTCATTGTCACTCTTTGGATTGATAATCTACATCCGAGTCTTTTGTTACAGCAAATCCCGGCGGCTTTTCTCGTGCATTTTAATGGAAACGTACCTCAGCAGTTCCACCTTCGAACCTCAGCTGGGACTTGGTGTGTTAATGTGGAAAAAATTAATGACAGGTTCTTTTTCCAAAAGGGTTGGAAGAAATTTGTTCATGACAATGGTTTAGAGATTTGTGAATTCCTTGTTTTTCGATATGCCTTTAATTTGAGATTCTACGTTGACATATATGGAAGAAATGGCTGCAAAAAAGAGTTTGTAACAGTCACTGGGAAAACCGAGAGACCACATGAAAAGGGACATGATCATGTAATTCAGAGAAAGACCCCAAGAAATCATGAAAATCAGAATGTAGATAATCGAGGCCTAAAAGGCTCCACTTATGGAACTAGGACTAATCAAGTAACTACTCCCATACAAGATGAAGGCTATGAAGCAACTGATGATATTGATTCTCAAACATTGATGCATCCGCGGTGGCTACAAGTACTGGGAAAGCTTATTCCCGTCGGAGAGACAATGTTTTTGGATCTGAAAACCCTTTTTTCAAGGTTGAAATGCGGGACACGTATATCCATAGATCCTAGTACCATTACCCTTCGGGTTTCAGATGGGAGAACTTGGCGAGTGAAAGTGGGATTTCAAACAAGAGGGTGCCAATTCTTAGCTGGTTGGATCACATTTGTGCGAGACAATGAGTTAGATGTTGGCGATGTGTGTGTCTTTGTCTTGATTAACAAGATTGAATTTATATTTGAAGCTGTCTTTTACCGCAAGGAAGAAGCTGAAAATCATCACATCTCGTCCCTAGCAGAGCCAACGGTTTCAATTCTGCAAACCCTTTTTTTCAAAGTTGTAATGCCGTACTCCTCTATCCATCACCGTAATATGTGTGTGCCATATAAGTTTGTCAAGACACATCTCGCTGACCACCCTAGTAACCTTACCCTTTGTGTTTCGGATGGGAGAACTTGGCCTGTCAATTTGGTGTATGAAGGTCCAAAAGGCAGATTCATAGGCGGGTGGTCGGCATTTAGGCAAGACAATGATTTGAAACTTGATGATGTTTGTGTCTTTGTCTTGGTTAACAAGGTTGAGCTATTTGAAGTTGCCTTTTACCGCAAGCCAGAAGCTGCGAATATTTGCGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

401

Amino Acids

46.17

Weight (kDa)

8.45

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 702
AccII CGCG 1 cut(s) 523
AciI CCGC 7 cut(s) 68, 521, 523, 609, 820, 1068, 1168
AclWI GGATC 3 cut(s) 585, 623, 731
AcsI RAATTY 4 cut(s) 4, 194, 227, 794
AfaI GTAC 4 cut(s) 99, 537, 637, 914
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 9 cut(s) 597, 604, 692, 794, 806, 876, 898, 1102, 1154
AleI CACNNNNGTG 1 cut(s) 731
AluBI AGCT 7 cut(s) 128, 547, 716, 809, 833, 1147, 1181
AluI AGCT 7 cut(s) 128, 547, 716, 809, 833, 1147, 1181
Alw26I GTCTC 3 cut(s) 325, 557, 732
AlwI GGATC 3 cut(s) 585, 623, 731
AlwNI CAGNNNCTG 2 cut(s) 317, 1181
AoxI GGCC 2 cut(s) 412, 1022
ApeKI GCWGC 2 cut(s) 291, 1181
ApoI RAATTY 4 cut(s) 4, 194, 227, 794
ArsI GACNNNNNNTTYG 2 cut(s) 556, 588
AseI ATTAAT 1 cut(s) 159
AspLEI GCGC 1 cut(s) 1196
AspS9I GGNCC 1 cut(s) 1046
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 920
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 1046
BanI GGYRCC 1 cut(s) 702
BauI CACGAG 1 cut(s) 77
BbvCI CCTCAGC 2 cut(s) 102, 124
BbvI GCAGC 2 cut(s) 278, 1168
BccI CCATC 3 cut(s) 653, 933, 1004
BceAI ACGGC 1 cut(s) 895
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 325, 557, 732
BfaI CTAG 4 cut(s) 438, 633, 857, 984
BglI GCCNNNNNGGC 1 cut(s) 420
BisI GCNGC 3 cut(s) 69, 292, 1182
BlsI GCNGC 3 cut(s) 70, 293, 1183
BmcAI AGTACT 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 1046
BmgT120I GGNCC 1 cut(s) 1046
BmiI GGNNCC 2 cut(s) 424, 704
BmrFI CCNGG 1 cut(s) 65
BmrI ACTGGG 2 cut(s) 327, 548
BmsI GCATC 2 cut(s) 504, 526
BmuI ACTGGG 2 cut(s) 327, 548
Bpu10I CCTNAGC 2 cut(s) 102, 124
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 322, 543
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 3 cut(s) 37, 517, 1015
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 116, 138
BseNI ACTGG 2 cut(s) 322, 543
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 2 cut(s) 278, 1168
BseYI CCCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 523
BshFI GGCC 2 cut(s) 414, 1024
BshNI GGYRCC 1 cut(s) 702
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 4 cut(s) 145, 360, 625, 838
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 3 cut(s) 325, 557, 732
BsmFI GGGAC 4 cut(s) 145, 360, 625, 838
BsnI GGCC 2 cut(s) 414, 1024
Bso31I GGTCTC 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 118
Bsp143I GATC 4 cut(s) 352, 577, 628, 723
BspACI CCGC 7 cut(s) 68, 521, 523, 609, 820, 1068, 1168
BspANI GGCC 2 cut(s) 414, 1024
BspCNI CTCAG 2 cut(s) 115, 137
BspFNI CGCG 1 cut(s) 523
BspHI TCATGA 2 cut(s) 202, 385
BspLI GGNNCC 2 cut(s) 424, 704
BspPI GGATC 3 cut(s) 585, 623, 731
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 325
BsrI ACTGG 2 cut(s) 322, 543
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 4 cut(s) 352, 577, 628, 723
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 313, 871, 932
BstBAI YACGTR 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 1172
BstDEI CTNAG 3 cut(s) 102, 124, 712
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 37, 517, 1015
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 1196
BstKTI GATC 4 cut(s) 355, 580, 631, 726
BstMAI GTCTC 3 cut(s) 325, 557, 732
BstMBI GATC 4 cut(s) 352, 577, 628, 723
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 2 cut(s) 278, 1168
BstX2I RGATCY 2 cut(s) 577, 628
BstYI RGATCY 2 cut(s) 577, 628
BsuRI GGCC 2 cut(s) 414, 1024
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 774
BtsCI GGATG 3 cut(s) 37, 517, 1015
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 1172
CaiI CAGNNNCTG 2 cut(s) 317, 1181
CciI TCATGA 2 cut(s) 202, 385
CfoI GCGC 1 cut(s) 1196
Cfr13I GGNCC 1 cut(s) 1046
Cfr42I CCGCGG 1 cut(s) 524
Csp6I GTAC 4 cut(s) 98, 536, 636, 913
CviAII CATG 5 cut(s) 203, 338, 350, 356, 386
CviQI GTAC 4 cut(s) 98, 536, 636, 913
DdeI CTNAG 3 cut(s) 102, 124, 712
DpnI GATC 4 cut(s) 354, 579, 630, 725
DpnII GATC 4 cut(s) 352, 577, 628, 723
Eco147I AGGCCT 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 519
FaeI CATG 5 cut(s) 206, 341, 353, 359, 389
FaqI GGGAC 4 cut(s) 145, 360, 625, 838
FatI CATG 5 cut(s) 202, 337, 349, 355, 385
FauI CCCGC 2 cut(s) 602, 1061
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 69, 292, 1182
FokI GGATG 3 cut(s) 24, 504, 1022
Fsp4HI GCNGC 3 cut(s) 69, 292, 1182
FspBI CTAG 4 cut(s) 438, 633, 857, 984
GlaI GCGC 1 cut(s) 1195
GluI GCNGC 3 cut(s) 69, 292, 1182
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 414, 1024
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 1196
Hin1II CATG 5 cut(s) 206, 341, 353, 359, 389
Hin6I GCGC 1 cut(s) 1194
HinP1I GCGC 1 cut(s) 1194
HincII GTYRAC 2 cut(s) 271, 1135
HindII GTYRAC 2 cut(s) 271, 1135
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 4 cut(s) 43, 261, 500, 1059
HpaI GTTAAC 1 cut(s) 1135
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 2 cut(s) 271, 1135
Hpy188I TCNGA 7 cut(s) 42, 366, 396, 560, 582, 658, 1009
Hpy188III TCNNGA 4 cut(s) 203, 386, 778, 961
Hpy8I GTNNAC 2 cut(s) 271, 1135
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 4 cut(s) 125, 467, 656, 1037
HpyCH4III ACNGT 3 cut(s) 313, 871, 932
HpyCH4IV ACGT 3 cut(s) 96, 267, 616
HpyCH4V TGCA 4 cut(s) 82, 294, 517, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 3 cut(s) 102, 124, 712
HpySE526I ACGT 3 cut(s) 96, 267, 616
Hsp92II CATG 5 cut(s) 206, 341, 353, 359, 389
HspAI GCGC 1 cut(s) 1194
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 1135
KspI CCGCGG 1 cut(s) 524
Kzo9I GATC 4 cut(s) 352, 577, 628, 723
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 8 cut(s) 78, 114, 151, 303, 524, 702, 1038, 1188
Lsp1109I GCAGC 2 cut(s) 278, 1168
LweI GCATC 2 cut(s) 504, 526
MaeI CTAG 4 cut(s) 438, 633, 857, 984
MaeII ACGT 3 cut(s) 96, 267, 616
MaeIII GTNAC 6 cut(s) 13, 51, 307, 313, 451, 986
MalI GATC 4 cut(s) 354, 579, 630, 725
MboI GATC 4 cut(s) 352, 577, 628, 723
MboII GAAGA 3 cut(s) 202, 294, 839
MflI RGATCY 2 cut(s) 577, 628
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 3 cut(s) 167, 538, 701
MnlI CCTC 5 cut(s) 111, 133, 404, 692, 928
Mph1103I ATGCAT 1 cut(s) 519
MseI TTAA 6 cut(s) 87, 144, 159, 252, 783, 1134
MslI CAYNNNNRTG 4 cut(s) 87, 207, 354, 731
MspA1I CMGCKG 2 cut(s) 128, 523
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 65
NdeII GATC 4 cut(s) 352, 577, 628, 723
NlaIII CATG 5 cut(s) 206, 341, 353, 359, 389
NlaIV GGNNCC 2 cut(s) 424, 704
NmuCI GTSAC 2 cut(s) 13, 313
NsiI ATGCAT 1 cut(s) 519
NspV TTCGAA 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 731
PagI TCATGA 2 cut(s) 202, 385
PceI AGGCCT 1 cut(s) 414
PfeI GAWTC 3 cut(s) 261, 500, 1059
PkrI GCNGC 3 cut(s) 70, 293, 1183
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 617
PshBI ATTAAT 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 424, 704
PspPI GGNCC 1 cut(s) 1046
PstNI CAGNNNCTG 2 cut(s) 317, 1181
PsuI RGATCY 2 cut(s) 577, 628
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 4 cut(s) 99, 537, 637, 914
RsaNI GTAC 4 cut(s) 98, 536, 636, 913
RseI CAYNNNNRTG 4 cut(s) 87, 207, 354, 731
SacII CCGCGG 1 cut(s) 524
SaqAI TTAA 6 cut(s) 87, 144, 159, 252, 783, 1134
SatI GCNGC 3 cut(s) 69, 292, 1182
Sau3AI GATC 4 cut(s) 352, 577, 628, 723
Sau96I GGNCC 1 cut(s) 1046
ScaI AGTACT 1 cut(s) 537
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 65
SfaNI GCATC 2 cut(s) 504, 526
Sfr303I CCGCGG 1 cut(s) 524
SfuI TTCGAA 1 cut(s) 118
SgrBI CCGCGG 1 cut(s) 524
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 4 cut(s) 87, 207, 354, 731
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 7 cut(s) 68, 521, 523, 609, 820, 1068, 1168
SspI AATATT 1 cut(s) 1189
SspMI CTAG 4 cut(s) 438, 633, 857, 984
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 313, 871, 932
TaiI ACGT 3 cut(s) 99, 270, 619
TaqI TCGA 3 cut(s) 118, 241, 409
TatI WGTACW 1 cut(s) 535
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 261, 500, 1059
Tru1I TTAA 6 cut(s) 87, 144, 159, 252, 783, 1134
Tru9I TTAA 6 cut(s) 87, 144, 159, 252, 783, 1134
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 13, 313
TseI GCWGC 2 cut(s) 291, 1181
Tsp45I GTSAC 2 cut(s) 13, 313
TspDTI ATGAA 8 cut(s) 17, 191, 354, 402, 486, 495, 1051, 1056
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 1046
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 4 cut(s) 4, 194, 227, 794
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XspI CTAG 4 cut(s) 438, 633, 857, 984
ZrmI AGTACT 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.