Rh2AG163000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000593
Physical Location & Seq
Reverse (-)
15396418 .. 15399012
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG163000.1

Sequence Viewer

Length: 1128 bp
ATGGCAACAGAAAGAAACCCCTCGTTTTTCAAGGTTCTTCAGGGTGATCAGTTCTCTATCAAATTGAAAATCCCTAGAGCATTTCTCCAGTATTTTAATGGAAAGGTACCTCCCAAGTGCTTTCTTCAAACCCTAGGTCAAACTTGGCTTGTTGATGTGGAAAAGGTTAATCACAAGTTCTATTTCCAACTGGGGTGGAATCGCTTTGTGCAAGACAATGGCTTGAAGTATGGTCAACTTCTAGTCTTCCGTTATGCTGGAAACTCAGACTTCCATGTGGACATATTTGGAATAAATACCTGCAAAAATCTAAAAACAGAGGAGAAATCTTTGCTTTCATGTCCTCTGCCTCGCAAGAAAAACAAAACAAGTTCTATTGGTAGAGCAGATATCACCTCTAACTTTAGAAAGAGGGTTCCACATCTTGAGAAGTCACAAATGAAAAGGAAAAAGGCACATTGGTTCAAATTAGAAATGATAGATAATTCTGATACTGATTCTGGTGATGAAGATGATCATGATGAGGAGGATGACGACGAAAATGAAGATGATGAAGAAGAAGAAGAAGAAACTCAAGATGAAGAGGTTGAGGAGGAAGATGATGGTGATTCTGTTGGAACCCTCAACGATTCTCTACCATGCTCAAGAACAGTGGGGAAATATACATTAGCATCGAGGCTGCACCAGAGAGAGAGAAAGATTTCTAGCGCAAAAGCAAAAACCAACATCAAAACTGTTGATGGCTTGTCTAGAGAGGAAAAGATCCTAAAAGTTATAGCTCTACAAAGAGCTAATGCTTTCAAATCTAATTCTGTCAACCCTTGTTTCATGGTTTCCTTGTCTGCCACATATGCTCATGGAGCTTTTCTGAATTTGCCACGGAGTTTTGCCGCAGTACATTTTACTAATCCACAGCCTAGCCACGTCATCCTTTGGGTTGAGAAGAGCTCTTGGTTTGTCAAGGTCAGTTATATTGGGACTGCAACGAGATTACAGGCCGGCTGGTCTGAATTTGTGCATGTCAAAAATTTGAAGATTGGTGATGCTTGTGTTTTTGTCTTGACGGATGCCATCAATTTTCAATATGATGTTGAAATATTCCGCGTTACAGATGCTGTTTGCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

375

Amino Acids

42.87

Weight (kDa)

5.98

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 9 - 96 5e-14 B3 DNA binding domain
B3 PF02362 287 - 369 4.5e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 1 cut(s) 1104
AciI CCGC 2 cut(s) 891, 1102
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 3 cut(s) 871, 1010, 1027
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 2 cut(s) 108, 897
AgsI TTSAA 9 cut(s) 31, 67, 128, 226, 466, 802, 1033, 1082, 1094
AjiI CACGTC 1 cut(s) 925
AluBI AGCT 4 cut(s) 779, 791, 863, 948
AluI AGCT 4 cut(s) 779, 791, 863, 948
Alw21I GWGCWC 1 cut(s) 950
AlwI GGATC 1 cut(s) 757
AlwNI CAGNNNCTG 1 cut(s) 1115
AoxI GGCC 1 cut(s) 996
ApeKI GCWGC 1 cut(s) 679
ApoI RAATTY 3 cut(s) 871, 1010, 1027
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
Asp700I GAANNNNTTC 1 cut(s) 700
Asp718I GGTACC 1 cut(s) 106
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 1 cut(s) 710
AsuHPI GGTGA 5 cut(s) 56, 385, 515, 617, 1052
AvrII CCTAGG 1 cut(s) 133
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 950
BbvI GCAGC 1 cut(s) 666
BccI CCATC 3 cut(s) 596, 734, 1079
BclI TGATCA 2 cut(s) 46, 514
BfaI CTAG 7 cut(s) 75, 134, 242, 705, 750, 918, 1126
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 2 cut(s) 680, 891
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 2 cut(s) 681, 892
BmgBI CACGTC 1 cut(s) 925
BmiI GGNNCC 3 cut(s) 108, 417, 619
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 4 cut(s) 680, 1033, 1057, 1102
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 4 cut(s) 69, 101, 932, 964
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 446, 558, 628
BsaJI CCNNGG 2 cut(s) 133, 878
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 2 cut(s) 88, 195
BseDI CCNNGG 2 cut(s) 133, 878
BseGI GGATG 3 cut(s) 535, 927, 1072
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 88, 195
BseRI GAGGAG 3 cut(s) 335, 539, 605
BseXI GCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 1 cut(s) 998
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 950
BsiSI CCGG 1 cut(s) 999
BslFI GGGAC 1 cut(s) 991
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 950
Bsp143I GATC 3 cut(s) 46, 514, 762
BspACI CCGC 2 cut(s) 891, 1102
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 1104
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 108, 417, 619
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 757
BspQI GCTCTTC 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 998
BsrI ACTGG 2 cut(s) 88, 195
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 2 cut(s) 133, 878
BssMI GATC 3 cut(s) 46, 514, 762
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 652, 736
Bst6I CTCTTC 2 cut(s) 576, 938
BstC8I GCNNGC 1 cut(s) 1000
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 3 cut(s) 535, 927, 1072
BstFNI CGCG 1 cut(s) 1104
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 3 cut(s) 49, 517, 765
BstMBI GATC 3 cut(s) 46, 514, 762
BstMWI GCNNNNNNNGC 2 cut(s) 851, 860
BstNSI RCATGY 1 cut(s) 1022
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 1 cut(s) 666
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 762
BstYI RGATCY 1 cut(s) 762
BsuRI GGCC 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 878
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 3 cut(s) 535, 927, 1072
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 1000
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 710
Cfr10I RCCGGY 1 cut(s) 998
Csp6I GTAC 2 cut(s) 107, 896
CspCI CAANNNNNGTGG 4 cut(s) 176, 211, 633, 668
CviAII CATG 7 cut(s) 275, 339, 518, 639, 829, 857, 1019
CviQI GTAC 2 cut(s) 107, 896
DdeI CTNAG 1 cut(s) 265
DpnI GATC 3 cut(s) 48, 516, 764
DpnII GATC 3 cut(s) 46, 514, 762
Eam1104I CTCTTC 2 cut(s) 576, 938
EarI CTCTTC 2 cut(s) 576, 938
Ecl136II GAGCTC 1 cut(s) 948
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 950
Eco32I GATATC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 948
Eco57I CTGAAG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 948
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 950
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 7 cut(s) 278, 342, 521, 642, 832, 860, 1022
FaqI GGGAC 1 cut(s) 991
FatI CATG 7 cut(s) 274, 338, 517, 638, 828, 856, 1018
FauNDI CATATG 1 cut(s) 850
FbaI TGATCA 2 cut(s) 46, 514
Fnu4HI GCNGC 2 cut(s) 680, 891
FokI GGATG 3 cut(s) 542, 914, 1079
FriOI GRGCYC 1 cut(s) 950
Fsp4HI GCNGC 2 cut(s) 680, 891
FspBI CTAG 7 cut(s) 75, 134, 242, 705, 750, 918, 1126
GlaI GCGC 1 cut(s) 709
GluI GCNGC 2 cut(s) 680, 891
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 998
HapII CCGG 1 cut(s) 999
HhaI GCGC 1 cut(s) 710
Hin1II CATG 7 cut(s) 278, 342, 521, 642, 832, 860, 1022
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HincII GTYRAC 2 cut(s) 236, 817
HindII GTYRAC 2 cut(s) 236, 817
HinfI GANTC 4 cut(s) 199, 497, 608, 629
HpaII CCGG 1 cut(s) 999
HphI GGTGA 5 cut(s) 56, 385, 515, 617, 1052
Hpy166II GTNNAC 3 cut(s) 236, 280, 817
Hpy188I TCNGA 4 cut(s) 268, 490, 870, 1009
Hpy188III TCNNGA 6 cut(s) 425, 518, 575, 645, 750, 1060
Hpy8I GTNNAC 3 cut(s) 236, 280, 817
Hpy99I CGWCG 1 cut(s) 539
HpyCH4III ACNGT 2 cut(s) 652, 736
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 5 cut(s) 211, 303, 682, 983, 1018
HpyF10VI GCNNNNNNNGC 2 cut(s) 851, 860
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 7 cut(s) 278, 342, 521, 642, 832, 860, 1022
HspAI GCGC 1 cut(s) 708
KpnI GGTACC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 998
KroNI GCCGGC 1 cut(s) 1000
Ksp22I TGATCA 2 cut(s) 46, 514
Kzo9I GATC 3 cut(s) 46, 514, 762
LguI GCTCTTC 1 cut(s) 938
LmnI GCTCC 2 cut(s) 860, 1127
Lsp1109I GCAGC 1 cut(s) 666
LweI GCATC 4 cut(s) 680, 1033, 1057, 1102
MaeI CTAG 7 cut(s) 75, 134, 242, 705, 750, 918, 1126
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 2 cut(s) 432, 1105
MalI GATC 3 cut(s) 48, 516, 764
MboI GATC 3 cut(s) 46, 514, 762
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 950
MluCI AATT 8 cut(s) 62, 467, 484, 808, 871, 1010, 1027, 1075
MmeI TCCRAC 2 cut(s) 211, 595
MroNI GCCGGC 1 cut(s) 998
MroXI GAANNNNTTC 1 cut(s) 700
MseI TTAA 2 cut(s) 96, 168
MspI CCGG 1 cut(s) 999
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 2 cut(s) 851, 860
NaeI GCCGGC 1 cut(s) 1000
NdeI CATATG 1 cut(s) 850
NdeII GATC 3 cut(s) 46, 514, 762
NgoMIV GCCGGC 1 cut(s) 998
NlaIII CATG 7 cut(s) 278, 342, 521, 642, 832, 860, 1022
NlaIV GGNNCC 3 cut(s) 108, 417, 619
NmuCI GTSAC 1 cut(s) 432
NspI RCATGY 1 cut(s) 1022
PagI TCATGA 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 938
PdiI GCCGGC 1 cut(s) 1000
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 4 cut(s) 199, 497, 608, 629
PkrI GCNGC 2 cut(s) 681, 892
Psp124BI GAGCTC 1 cut(s) 950
PspN4I GGNNCC 3 cut(s) 108, 417, 619
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 1 cut(s) 762
RsaI GTAC 2 cut(s) 108, 897
RsaNI GTAC 2 cut(s) 107, 896
SacI GAGCTC 1 cut(s) 950
SapI GCTCTTC 1 cut(s) 938
SaqAI TTAA 2 cut(s) 96, 168
SatI GCNGC 2 cut(s) 680, 891
Sau3AI GATC 3 cut(s) 46, 514, 762
SduI GDGCHC 1 cut(s) 950
SfaNI GCATC 4 cut(s) 680, 1033, 1057, 1102
SmlI CTYRAG 3 cut(s) 425, 573, 643
SmoI CTYRAG 3 cut(s) 425, 573, 643
Sse9I AATT 8 cut(s) 62, 467, 484, 808, 871, 1010, 1027, 1075
SsiI CCGC 2 cut(s) 891, 1102
SspI AATATT 1 cut(s) 1098
SspMI CTAG 7 cut(s) 75, 134, 242, 705, 750, 918, 1126
SstI GAGCTC 1 cut(s) 950
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 652, 736
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 674
TasI AATT 8 cut(s) 62, 467, 484, 808, 871, 1010, 1027, 1075
TatI WGTACW 1 cut(s) 895
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 4 cut(s) 199, 497, 608, 629
Tru1I TTAA 2 cut(s) 96, 168
Tru9I TTAA 2 cut(s) 96, 168
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 7 cut(s) 327, 455, 522, 558, 567, 594, 817
TspGWI ACGGA 3 cut(s) 239, 895, 1079
TspRI CASTG 1 cut(s) 657
XapI RAATTY 3 cut(s) 871, 1010, 1027
XbaI TCTAGA 1 cut(s) 749
XceI RCATGY 1 cut(s) 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 700
XspI CTAG 7 cut(s) 75, 134, 242, 705, 750, 918, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.