Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Forward (+)

42281762 .. 42284674

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAGAAGCTGATGAAGATGATGATCCGTCTGTTGAAATATTGGATGATGTTGCACCATACCCAACAAGTAGAGGAGAGAAATATCAGATATCAAGTCCTCTGCCTCACATTGGTTATGACCTTGACATTCAAGATAACATATATGATGAGAATAAGCATGAAAGTTATAAAAATGAAGAAGATGAAAATGAGGAAGATGATCACAATGATGATGACGACGACGACTCTATTGAAATCTTGAGCGAAAAACCACCATGCTCGAAAACAAGAGGTAAATCTCCATTAGAATTGCAGCTCCGCAAGAGCAAGAGAACATGTTCTAATATTAAAGCTCAAAGCAATATTAAAGATGCAGGTGGCTCTTCCAGAACTGAAAGTTTCCGAAAACCTGAGATACCGAAGAAGATGAATCTAGCTATGGAAGTTGGAAAGCATAATGCTCTTCAGAGAGCTCTTGATTTTAAATCTAAATCTGTAAATCCTTGTCTTCTGCTTCCCATGCGTGCCTCTTATGCCCGTGGAAGTTACTTGAATTTTCCATTTGACTTTGCCAAGAGATATCTTAGGAAGCAGCCTAGTAACGTCACTTTTCTGGCCCATGGTGTATCTTGGCCTGTCAAGTTCTATTATCCCCAAAACCAAACCAGAGCAGTGGCTGGGTGGTCTACATTTGCGCGAGTCAATAAATTGAAGGAGAGTGATGTGTGTGTCTTTGTGTTGACTGACGACATCAAATTTGTATTTAGTGTCTCGATTTTCCGCATTACAGGTGCTGCAAATTGCACCTTACCATCACCAGAGGAAGAAAGAAAATGGGAGAAAGGAAGAAACAGAAGAAAGGAAATGAAGAAGAAGAAGAGGGAGACGGGAAAAGGCAGAGAAGAGAAAGGTACAATTTTTACAATGAAAAATTCATGTAGTCCCTTGTCATTGATTCATGATCTATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

318

Amino Acids

36.51

Weight (kDa)

6.63

Isoelectric Point (pI)

63.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	171 - 255	1.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	668
AccII	CGCG	1 cut(s)	679
AciI	CCGC	2 cut(s)	301, 763
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	3 cut(s)	535, 737, 913
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	895
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	38, 134, 236, 535, 694
AluBI	AGCT	5 cut(s)	11, 298, 335, 419, 455
AluI	AGCT	5 cut(s)	11, 298, 335, 419, 455
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	757, 860
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	2 cut(s)	659, 776
AoxI	GGCC	2 cut(s)	597, 614
ApeKI	GCWGC	3 cut(s)	295, 574, 776
ApoI	RAATTY	3 cut(s)	535, 737, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	307, 586, 763
BccI	CCATC	1 cut(s)	802
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	757, 860
BfaI	CTAG	2 cut(s)	416, 579
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	3 cut(s)	296, 575, 777
BlsI	GCNGC	3 cut(s)	297, 576, 778
BmgT120I	GGNCC	1 cut(s)	598
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	520, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	520, 601
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	307, 586, 763
BseYI	CCCAGC	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	2 cut(s)	599, 616
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	757, 860
BsmBI	CGTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	909
BsnI	GGCC	2 cut(s)	599, 616
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	25, 202, 943
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	2 cut(s)	301, 763
BspANI	GGCC	2 cut(s)	599, 616
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	940
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	2 cut(s)	370, 450
BssECI	CCNNGG	2 cut(s)	520, 601
BssMI	GATC	3 cut(s)	25, 202, 943
BssT1I	CCWWGG	1 cut(s)	601
Bst6I	CTCTTC	4 cut(s)	370, 450, 854, 879
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	393, 566
BstDSI	CCRYGG	2 cut(s)	520, 601
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	3 cut(s)	28, 205, 946
BstMAI	GTCTC	2 cut(s)	757, 860
BstMBI	GATC	3 cut(s)	25, 202, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 515
BstNSI	RCATGY	1 cut(s)	321
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	3 cut(s)	307, 586, 763
BstV2I	GAAGAC	1 cut(s)	482
BstXI	CCANNNNNNTGG	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	599, 616
BtgI	CCRYGG	2 cut(s)	520, 601
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	2 cut(s)	659, 776
CciI	TCATGA	1 cut(s)	940
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	894
CviAII	CATG	7 cut(s)	161, 258, 318, 502, 602, 918, 941
CviQI	GTAC	1 cut(s)	894
DdeI	CTNAG	2 cut(s)	393, 566
DpnI	GATC	3 cut(s)	27, 204, 945
DpnII	GATC	3 cut(s)	25, 202, 943
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	4 cut(s)	370, 450, 854, 879
EarI	CTCTTC	4 cut(s)	370, 450, 854, 879
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	457
Eco32I	GATATC	2 cut(s)	93, 563
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	455
EcoRV	GATATC	2 cut(s)	93, 563
EcoT14I	CCWWGG	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	601
Esp3I	CGTCTC	1 cut(s)	860
FaeI	CATG	7 cut(s)	164, 261, 321, 505, 605, 921, 944
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	7 cut(s)	160, 257, 317, 501, 601, 917, 940
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	3 cut(s)	296, 575, 777
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	296, 575, 777
FspBI	CTAG	2 cut(s)	416, 579
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	3 cut(s)	296, 575, 777
GsaI	CCCAGC	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	599, 616
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	7 cut(s)	164, 261, 321, 505, 605, 921, 944
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	4 cut(s)	227, 412, 681, 937
HphI	GGTGA	1 cut(s)	789
Hpy166II	GTNNAC	2 cut(s)	669, 723
Hpy188I	TCNGA	3 cut(s)	90, 386, 450
Hpy188III	TCNNGA	6 cut(s)	134, 241, 369, 458, 754, 941
Hpy8I	GTNNAC	2 cut(s)	669, 723
Hpy99I	CGWCG	2 cut(s)	224, 227
HpyAV	CCTTC	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	56, 295, 356, 779, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 515
HpyF3I	CTNAG	2 cut(s)	393, 566
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	7 cut(s)	164, 261, 321, 505, 605, 921, 944
HspAI	GCGC	1 cut(s)	677
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	25, 202, 943
LguI	GCTCTTC	2 cut(s)	370, 450
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	9 cut(s)	342, 382, 405, 581, 630, 645, 661, 756, 813
Lsp1109I	GCAGC	3 cut(s)	307, 586, 763
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	2 cut(s)	416, 579
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	527, 581, 586
MalI	GATC	3 cut(s)	27, 204, 945
MboI	GATC	3 cut(s)	25, 202, 943
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	8 cut(s)	290, 535, 689, 737, 781, 897, 913, 952
MlyI	GAGTC	2 cut(s)	221, 690
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	68, 111, 117, 187, 266, 520, 796, 855
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	3 cut(s)	330, 348, 465
MslI	CAYNNNNRTG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	502, 515
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	3 cut(s)	25, 202, 943
NlaIII	CATG	7 cut(s)	164, 261, 321, 505, 605, 921, 944
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	321
PagI	TCATGA	1 cut(s)	940
PaqCI	CACCTGC	1 cut(s)	347
PciI	ACATGT	1 cut(s)	317
PciSI	GCTCTTC	2 cut(s)	370, 450
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	412, 937
PkrI	GCNGC	3 cut(s)	297, 576, 778
PleI	GAGTC	2 cut(s)	221, 689
PpsI	GAGTC	2 cut(s)	221, 689
PscI	ACATGT	1 cut(s)	317
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	598
PstNI	CAGNNNCTG	2 cut(s)	659, 776
RsaI	GTAC	1 cut(s)	895
RsaNI	GTAC	1 cut(s)	894
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	2 cut(s)	370, 450
SaqAI	TTAA	3 cut(s)	330, 348, 465
SatI	GCNGC	3 cut(s)	296, 575, 777
Sau3AI	GATC	3 cut(s)	25, 202, 943
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	2 cut(s)	221, 690
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	8 cut(s)	290, 535, 689, 737, 781, 897, 913, 952
SsiI	CCGC	2 cut(s)	301, 763
SspI	AATATT	3 cut(s)	42, 328, 346
SspMI	CTAG	2 cut(s)	416, 579
SstI	GAGCTC	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	601
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	263, 755
TasI	AATT	8 cut(s)	290, 535, 689, 737, 781, 897, 913, 952
TfiI	GAWTC	2 cut(s)	412, 937
Tru1I	TTAA	3 cut(s)	330, 348, 465
Tru9I	TTAA	3 cut(s)	330, 348, 465
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	295, 574, 776
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	9 cut(s)	30, 177, 192, 201, 425, 863, 906, 923, 929
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	660
XapI	RAATTY	3 cut(s)	535, 737, 913
XceI	RCATGY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	2 cut(s)	416, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.