B3 DNA binding domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 42 - 92 | 7.6e-07 | Leucine rich repeat N-terminal domain |
| LRR_8 | PF13855 | 310 - 362 | 1.1e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 318 - 406 | 1.2e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 368 - 410 | 3e-06 | Leucine rich repeat |
| LRR_4 | PF12799 | 374 - 412 | 8e-07 | Leucine Rich repeats (2 copies) |
| LRR_14 | PF23598 | 393 - 581 | 6.7e-14 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 424 - 478 | 5.6e-07 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 1449, 1794 |
| AciI | CCGC | 5 cut(s) | 815, 979, 1449, 1794, 1979 |
| AclWI | GGATC | 3 cut(s) | 537, 1665, 1818 |
| AcuI | CTGAAG | 2 cut(s) | 356, 593 |
| AfaI | GTAC | 4 cut(s) | 666, 1497, 1689, 1868 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 130, 1988 |
| AhlI | ACTAGT | 1 cut(s) | 617 |
| AjnI | CCWGG | 1 cut(s) | 525 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1159, 1191 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1514, 1546 |
| Alw26I | GTCTC | 3 cut(s) | 326, 1532, 1991 |
| AlwI | GGATC | 3 cut(s) | 537, 1665, 1818 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 236, 379 |
| Ama87I | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| AoxI | GGCC | 1 cut(s) | 1795 |
| ApeKI | GCWGC | 6 cut(s) | 103, 106, 233, 236, 249, 724 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 203, 235 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 630, 1903 |
| AspLEI | GCGC | 1 cut(s) | 2239 |
| AspS9I | GGNCC | 1 cut(s) | 1163 |
| AsuC2I | CCSGG | 2 cut(s) | 740, 2214 |
| AsuHPI | GGTGA | 4 cut(s) | 572, 1183, 1830, 1845 |
| AsuII | TTCGAA | 2 cut(s) | 41, 1533 |
| AvaI | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| AvaII | GGWCC | 1 cut(s) | 1163 |
| BauI | CACGAG | 1 cut(s) | 2065 |
| BbsI | GAAGAC | 3 cut(s) | 287, 1095, 1239 |
| BbvI | GCAGC | 6 cut(s) | 115, 118, 220, 223, 236, 711 |
| BccI | CCATC | 9 cut(s) | 118, 434, 499, 964, 1180, 1226, 1259, 1324, 1864 |
| BceAI | ACGGC | 1 cut(s) | 1966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 1 cut(s) | 527 |
| BciVI | GTATCC | 1 cut(s) | 869 |
| BcnI | CCSGG | 2 cut(s) | 740, 2214 |
| BcoDI | GTCTC | 3 cut(s) | 326, 1532, 1991 |
| BcuI | ACTAGT | 1 cut(s) | 617 |
| BfmI | CTRYAG | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 869 |
| BglII | AGATCT | 3 cut(s) | 796, 1258, 1354 |
| BmcAI | AGTACT | 1 cut(s) | 1868 |
| Bme1390I | CCNGG | 3 cut(s) | 527, 740, 2214 |
| Bme18I | GGWCC | 1 cut(s) | 1163 |
| BmeT110I | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| BmgT120I | GGNCC | 1 cut(s) | 1163 |
| BmrFI | CCNGG | 3 cut(s) | 527, 740, 2214 |
| BmrI | ACTGGG | 1 cut(s) | 1314 |
| BmsI | GCATC | 4 cut(s) | 236, 923, 1154, 2077 |
| BmuI | ACTGGG | 1 cut(s) | 1314 |
| BpiI | GAAGAC | 3 cut(s) | 287, 1095, 1239 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 39, 71 |
| BpmI | CTGGAG | 2 cut(s) | 134, 1758 |
| Bpu14I | TTCGAA | 2 cut(s) | 41, 1533 |
| BpuEI | CTTGAG | 1 cut(s) | 2017 |
| BpuMI | CCSGG | 2 cut(s) | 740, 2214 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1077 |
| BsaJI | CCNNGG | 4 cut(s) | 525, 675, 2023, 2120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 544, 574 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 130, 1988 |
| Bse1I | ACTGG | 7 cut(s) | 151, 583, 662, 1021, 1165, 1309, 1775 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1077 |
| BseBI | CCWGG | 1 cut(s) | 527 |
| BseDI | CCNNGG | 4 cut(s) | 525, 675, 2023, 2120 |
| BseGI | GGATG | 4 cut(s) | 251, 1095, 1704, 1856 |
| BseJI | GATNNNNATC | 1 cut(s) | 1077 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 130, 1988 |
| BseMII | CTCAG | 4 cut(s) | 5, 652, 1194, 1656 |
| BseNI | ACTGG | 7 cut(s) | 151, 583, 662, 1021, 1165, 1309, 1775 |
| BseRI | GAGGAG | 3 cut(s) | 146, 695, 1481 |
| BseXI | GCAGC | 6 cut(s) | 115, 118, 220, 223, 236, 711 |
| BseYI | CCCAGC | 2 cut(s) | 1122, 1194 |
| BsgI | GTGCAG | 1 cut(s) | 642 |
| BshFI | GGCC | 1 cut(s) | 1797 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| BsiSI | CCGG | 5 cut(s) | 327, 465, 740, 1758, 2214 |
| BslFI | GGGAC | 3 cut(s) | 272, 508, 2219 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 130, 1988 |
| BsmAI | GTCTC | 3 cut(s) | 326, 1532, 1991 |
| BsmFI | GGGAC | 3 cut(s) | 272, 508, 2219 |
| BsmI | GAATGC | 2 cut(s) | 1558, 1680 |
| BsnI | GGCC | 1 cut(s) | 1797 |
| BsoBI | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| Bsp119I | TTCGAA | 2 cut(s) | 41, 1533 |
| Bsp143I | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| BspACI | CCGC | 5 cut(s) | 815, 979, 1449, 1794, 1979 |
| BspANI | GGCC | 1 cut(s) | 1797 |
| BspCNI | CTCAG | 4 cut(s) | 6, 651, 1195, 1657 |
| BspHI | TCATGA | 1 cut(s) | 1731 |
| BspMAI | CTGCAG | 1 cut(s) | 105 |
| BspPI | GGATC | 3 cut(s) | 537, 1665, 1818 |
| BspT104I | TTCGAA | 2 cut(s) | 41, 1533 |
| BsrBI | CCGCTC | 2 cut(s) | 1449, 1794 |
| BsrI | ACTGG | 7 cut(s) | 151, 583, 662, 1021, 1165, 1309, 1775 |
| BssECI | CCNNGG | 4 cut(s) | 525, 675, 2023, 2120 |
| BssMI | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| BssSI | CACGAG | 1 cut(s) | 2065 |
| BssT1I | CCWWGG | 3 cut(s) | 675, 2023, 2120 |
| Bst2BI | CACGAG | 1 cut(s) | 2065 |
| Bst2UI | CCWGG | 1 cut(s) | 527 |
| Bst4CI | ACNGT | 5 cut(s) | 560, 1056, 1379, 1500, 1729 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 359, 1530 |
| BstBI | TTCGAA | 2 cut(s) | 41, 1533 |
| BstC8I | GCNNGC | 3 cut(s) | 35, 1143, 1973 |
| BstF5I | GGATG | 4 cut(s) | 251, 1095, 1704, 1856 |
| BstHHI | GCGC | 1 cut(s) | 2239 |
| BstKTI | GATC | 9 cut(s) | 307, 532, 569, 592, 799, 1261, 1357, 1660, 1813 |
| BstMAI | GTCTC | 3 cut(s) | 326, 1532, 1991 |
| BstMBI | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 336, 1037, 1335 |
| BstNI | CCWGG | 1 cut(s) | 527 |
| BstNSI | RCATGY | 2 cut(s) | 37, 1975 |
| BstSCI | CCNGG | 3 cut(s) | 525, 738, 2212 |
| BstSFI | CTRYAG | 1 cut(s) | 101 |
| BstV1I | GCAGC | 6 cut(s) | 115, 118, 220, 223, 236, 711 |
| BstV2I | GAAGAC | 3 cut(s) | 287, 1095, 1239 |
| BstX2I | RGATCY | 6 cut(s) | 529, 796, 1258, 1354, 1657, 1810 |
| BstYI | RGATCY | 6 cut(s) | 529, 796, 1258, 1354, 1657, 1810 |
| BsuI | GTATCC | 1 cut(s) | 869 |
| BsuRI | GGCC | 1 cut(s) | 1797 |
| BtsCI | GGATG | 4 cut(s) | 251, 1095, 1704, 1856 |
| BtsI | GCAGTG | 1 cut(s) | 2232 |
| BtsIMutI | CAGTG | 7 cut(s) | 11, 569, 908, 1093, 1200, 1841, 2232 |
| Cac8I | GCNNGC | 3 cut(s) | 35, 1143, 1973 |
| CaiI | CAGNNNCTG | 2 cut(s) | 236, 379 |
| CciI | TCATGA | 1 cut(s) | 1731 |
| CfoI | GCGC | 1 cut(s) | 2239 |
| Cfr13I | GGNCC | 1 cut(s) | 1163 |
| Csp6I | GTAC | 4 cut(s) | 665, 1496, 1688, 1867 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1948, 1983 |
| CviQI | GTAC | 4 cut(s) | 665, 1496, 1688, 1867 |
| DpnI | GATC | 9 cut(s) | 306, 531, 568, 591, 798, 1260, 1356, 1659, 1812 |
| DpnII | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| DraI | TTTAAA | 2 cut(s) | 754, 768 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 359, 1530 |
| EarI | CTCTTC | 3 cut(s) | 62, 359, 1530 |
| EciI | GGCGGA | 1 cut(s) | 1968 |
| Eco130I | CCWWGG | 3 cut(s) | 675, 2023, 2120 |
| Eco47I | GGWCC | 1 cut(s) | 1163 |
| Eco57I | CTGAAG | 2 cut(s) | 356, 593 |
| Eco88I | CYCGRG | 4 cut(s) | 1388, 1415, 1988, 2147 |
| EcoRI | GAATTC | 2 cut(s) | 734, 2174 |
| EcoRII | CCWGG | 1 cut(s) | 525 |
| EcoT14I | CCWWGG | 3 cut(s) | 675, 2023, 2120 |
| EcoT22I | ATGCAT | 1 cut(s) | 1680 |
| ErhI | CCWWGG | 3 cut(s) | 675, 2023, 2120 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 149, 181 |
| FaqI | GGGAC | 3 cut(s) | 272, 508, 2219 |
| FokI | GGATG | 4 cut(s) | 258, 1082, 1711, 1843 |
| GlaI | GCGC | 1 cut(s) | 2238 |
| GsaI | CCCAGC | 2 cut(s) | 1126, 1198 |
| GsuI | CTGGAG | 2 cut(s) | 134, 1758 |
| HaeIII | GGCC | 1 cut(s) | 1797 |
| HapII | CCGG | 5 cut(s) | 327, 465, 740, 1758, 2214 |
| HhaI | GCGC | 1 cut(s) | 2239 |
| Hin6I | GCGC | 1 cut(s) | 2237 |
| HinP1I | GCGC | 1 cut(s) | 2237 |
| HindIII | AAGCTT | 3 cut(s) | 163, 629, 899 |
| HpaII | CCGG | 5 cut(s) | 327, 465, 740, 1758, 2214 |
| HphI | GGTGA | 4 cut(s) | 572, 1183, 1830, 1845 |
| Hpy99I | CGWCG | 1 cut(s) | 179 |
| HpyAV | CCTTC | 4 cut(s) | 547, 591, 1860, 2036 |
| HpyCH4III | ACNGT | 5 cut(s) | 560, 1056, 1379, 1500, 1729 |
| HpyCH4IV | ACGT | 1 cut(s) | 1707 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 336, 1037, 1335 |
| HpySE526I | ACGT | 1 cut(s) | 1707 |
| HspAI | GCGC | 1 cut(s) | 2237 |
| Kzo9I | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| LmnI | GCTCC | 4 cut(s) | 153, 344, 450, 1791 |
| Lsp1109I | GCAGC | 6 cut(s) | 115, 118, 220, 223, 236, 711 |
| LweI | GCATC | 4 cut(s) | 236, 923, 1154, 2077 |
| MaeII | ACGT | 1 cut(s) | 1707 |
| MaeIII | GTNAC | 3 cut(s) | 554, 1065, 1091 |
| MalI | GATC | 9 cut(s) | 306, 531, 568, 591, 798, 1260, 1356, 1659, 1812 |
| MbiI | CCGCTC | 2 cut(s) | 1449, 1794 |
| MboI | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| MfeI | CAATTG | 1 cut(s) | 891 |
| MflI | RGATCY | 6 cut(s) | 529, 796, 1258, 1354, 1657, 1810 |
| MlyI | GAGTC | 3 cut(s) | 1400, 1576, 2201 |
| MmeI | TCCRAC | 2 cut(s) | 366, 1845 |
| Mph1103I | ATGCAT | 1 cut(s) | 1680 |
| MroXI | GAANNNNTTC | 2 cut(s) | 630, 1903 |
| MseI | TTAA | 8 cut(s) | 156, 456, 753, 767, 777, 1157, 1301, 1439 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1086 |
| MspA1I | CMGCKG | 2 cut(s) | 233, 724 |
| MspI | CCGG | 5 cut(s) | 327, 465, 740, 1758, 2214 |
| MspR9I | CCNGG | 3 cut(s) | 527, 740, 2214 |
| MunI | CAATTG | 1 cut(s) | 891 |
| Mva1269I | GAATGC | 2 cut(s) | 1558, 1680 |
| MvaI | CCWGG | 1 cut(s) | 527 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 336, 1037, 1335 |
| NciI | CCSGG | 2 cut(s) | 740, 2214 |
| NdeII | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| NsiI | ATGCAT | 1 cut(s) | 1680 |
| NspI | RCATGY | 2 cut(s) | 37, 1975 |
| NspV | TTCGAA | 2 cut(s) | 41, 1533 |
| PaeI | GCATGC | 2 cut(s) | 37, 1975 |
| PaeR7I | CTCGAG | 2 cut(s) | 1415, 2147 |
| PagI | TCATGA | 1 cut(s) | 1731 |
| PctI | GAATGC | 2 cut(s) | 1558, 1680 |
| PdmI | GAANNNNTTC | 2 cut(s) | 630, 1903 |
| PfeI | GAWTC | 9 cut(s) | 43, 382, 671, 785, 905, 1294, 1411, 1828, 1835 |
| PflFI | GACNNNGTC | 1 cut(s) | 263 |
| PfoI | TCCNGGA | 1 cut(s) | 2212 |
| PleI | GAGTC | 3 cut(s) | 1399, 1576, 2201 |
| PpsI | GAGTC | 3 cut(s) | 1399, 1576, 2201 |
| Psp6I | CCWGG | 1 cut(s) | 525 |
| PspFI | CCCAGC | 2 cut(s) | 1122, 1194 |
| PspGI | CCWGG | 1 cut(s) | 525 |
| PspPI | GGNCC | 1 cut(s) | 1163 |
| PspXI | VCTCGAGB | 1 cut(s) | 2147 |
| PstI | CTGCAG | 1 cut(s) | 105 |
| PstNI | CAGNNNCTG | 2 cut(s) | 236, 379 |
| PsuI | RGATCY | 6 cut(s) | 529, 796, 1258, 1354, 1657, 1810 |
| PsyI | GACNNNGTC | 1 cut(s) | 263 |
| PvuII | CAGCTG | 2 cut(s) | 233, 724 |
| RsaI | GTAC | 4 cut(s) | 666, 1497, 1689, 1868 |
| RsaNI | GTAC | 4 cut(s) | 665, 1496, 1688, 1867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SaqAI | TTAA | 8 cut(s) | 156, 456, 753, 767, 777, 1157, 1301, 1439 |
| Sau3AI | GATC | 9 cut(s) | 304, 529, 566, 589, 796, 1258, 1354, 1657, 1810 |
| Sau96I | GGNCC | 1 cut(s) | 1163 |
| ScaI | AGTACT | 1 cut(s) | 1868 |
| SchI | GAGTC | 3 cut(s) | 1400, 1576, 2201 |
| ScrFI | CCNGG | 3 cut(s) | 527, 740, 2214 |
| SfaNI | GCATC | 4 cut(s) | 236, 923, 1154, 2077 |
| SfcI | CTRYAG | 1 cut(s) | 101 |
| Sfr274I | CTCGAG | 2 cut(s) | 1415, 2147 |
| SfuI | TTCGAA | 2 cut(s) | 41, 1533 |
| SinI | GGWCC | 1 cut(s) | 1163 |
| SlaI | CTCGAG | 2 cut(s) | 1415, 2147 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SmlI | CTYRAG | 3 cut(s) | 1415, 1996, 2147 |
| SmoI | CTYRAG | 3 cut(s) | 1415, 1996, 2147 |
| SpeI | ACTAGT | 1 cut(s) | 617 |
| SphI | GCATGC | 2 cut(s) | 37, 1975 |
| SsiI | CCGC | 5 cut(s) | 815, 979, 1449, 1794, 1979 |
| StyD4I | CCNGG | 3 cut(s) | 525, 738, 2212 |
| StyI | CCWWGG | 3 cut(s) | 675, 2023, 2120 |
| TaaI | ACNGT | 5 cut(s) | 560, 1056, 1379, 1500, 1729 |
| TaiI | ACGT | 1 cut(s) | 1710 |
| TaqI | TCGA | 9 cut(s) | 41, 46, 174, 267, 931, 1230, 1416, 1533, 2148 |
| TatI | WGTACW | 1 cut(s) | 1866 |
| TauI | GCSGC | 4 cut(s) | 817, 982, 1452, 1797 |
| TfiI | GAWTC | 9 cut(s) | 43, 382, 671, 785, 905, 1294, 1411, 1828, 1835 |
| Tru1I | TTAA | 8 cut(s) | 156, 456, 753, 767, 777, 1157, 1301, 1439 |
| Tru9I | TTAA | 8 cut(s) | 156, 456, 753, 767, 777, 1157, 1301, 1439 |
| TscAI | CASTG | 7 cut(s) | 18, 576, 915, 1093, 1207, 1848, 2239 |
| TseI | GCWGC | 6 cut(s) | 103, 106, 233, 236, 249, 724 |
| TspDTI | ATGAA | 6 cut(s) | 49, 56, 623, 1307, 1748, 2187 |
| TspGWI | ACGGA | 1 cut(s) | 437 |
| TspRI | CASTG | 7 cut(s) | 18, 576, 915, 1093, 1207, 1848, 2239 |
| Tth111I | GACNNNGTC | 1 cut(s) | 263 |
| VpaK11BI | GGWCC | 1 cut(s) | 1163 |
| XbaI | TCTAGA | 4 cut(s) | 622, 857, 1351, 1429 |
| XceI | RCATGY | 2 cut(s) | 37, 1975 |
| XhoI | CTCGAG | 2 cut(s) | 1415, 2147 |
| XmnI | GAANNNNTTC | 2 cut(s) | 630, 1903 |
| ZrmI | AGTACT | 1 cut(s) | 1868 |
| Zsp2I | ATGCAT | 1 cut(s) | 1680 |