FvH4_7g04060

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000593
Physical Location & Seq
Reverse (-)
4641450 .. 4644153
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04060.t1

Sequence Viewer

Length: 1113 bp
ATGGCAACTGGAAGACAACCCTCTTTCTTCAAGGTTCTTAAAGGAGATGACTTCTGTGAAAAATTGAAAATCCCCCGAGCTTTTCTCATGCATTTTGATGGGACGGTACCTGAACAATGCCAACTTAGAATCCGCACTCAAACATGGCTTGTTGATGTGGAAAGGGTTCATCGCAAGTTCTATTTTCAACATGGTTGGAAGAAGTTTGTGCAGGAGAATGGTTTAAAGGGTTGTGAGTTTCTAGCTTTTTTCTATAGTGGAAACTCGGAGTTCTATGTGCACATATATGGGATAGATGCCTGCAAAAGGGAGTTTGCAGAGGTTGCTAGGGAAGTAAGTGACAGCGCCAAATGGAACTATGTTAGCAGGATTGAAGAGGCTGATAGTGATGACGCATCTGTGCAAGCTGGTGATGATGATGATGACAAGGAGGAGGATGACGATGAAGATGATGATTTTGAAAATGAAGCTGACAGTGAAGATAAAGATGAATATGTCGAAGAGGAAGTAGAAAGTGATAGAGATGAGGGGAAAAGTGATGATTCTATTGACATTCTGGACGAGTTTCCACAATGCTCAAAGGTAGAAACAAAGAGGACATCATCAGGGCTTCACAAGAGAAAGATAAACTGTTCTCAGGCTAAAGCACAAAGCATCAAAAGGCGTGCTAGTGGCTGGTCTAGCAATCAAAGAATCAAAGCACTGAAACAAAATGGAACAGGAGAGCTTATAGCTCGTCATAGAGCTGCTGATTTCATGTCCAAATCTGTCGATCCTTCTTGCTTGATAGTCATGTCTCCTTCGTATGTTAAAGGGTCTTGTGTGCATTTTCCTCGTGAGTTTAGCTACAGACATCTCAAAATGAAGTGTAGCCACATCAACCTTCGGGTTAATAAGAAAAGTTGGAGTCTCAATATCTATCAAGGAATTCGGAACAAATCATTCAAATTACAAGCTGGTTGGCCTGAATTTGTGAGAGAAAATAACCTGAAAGAGGGTGATGTGTGCGTCTTTGTGCTGAATGAAACCATCAGATATGTATTTGATGTTACAATTTTCCGCACCACAGAAGCTGCAGATTGCACCTTGCCAGGGGCAAGACAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

371

Amino Acids

42.76

Weight (kDa)

5.63

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 9 - 96 1.8e-11 B3 DNA binding domain
B3 PF02362 263 - 350 1.8e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AciI CCGC 2 cut(s) 133, 1060
AclWI GGATC 1 cut(s) 767
AcsI RAATTY 2 cut(s) 927, 968
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 306, 994, 1092
AgsI TTSAA 6 cut(s) 31, 67, 188, 374, 461, 946
AjnI CCWGG 1 cut(s) 1090
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 801, 914
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 1 cut(s) 1073
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 1 cut(s) 962
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 746, 1073
ApoI RAATTY 2 cut(s) 927, 968
Asp700I GAANNNNTTC 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 422, 1010
AvaI CYCGRG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 733, 1060
BccI CCATC 2 cut(s) 92, 1037
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 1 cut(s) 1092
BcoDI GTCTC 2 cut(s) 801, 914
BfaI CTAG 4 cut(s) 242, 327, 669, 681
BfmI CTRYAG 3 cut(s) 253, 847, 1074
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 2 cut(s) 747, 1074
BlsI GCNGC 2 cut(s) 748, 1075
Bme1390I CCNGG 1 cut(s) 1092
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 1092
BmsI GCATC 3 cut(s) 286, 404, 663
BpiI GAAGAC 1 cut(s) 19
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BsaJI CCNNGG 1 cut(s) 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 994, 1092
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 1 cut(s) 1091
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 306, 994, 1092
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 733, 1060
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 964
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 306, 994, 1092
BsmAI GTCTC 2 cut(s) 801, 914
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 964
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 772
BspACI CCGC 2 cut(s) 133, 1060
BspANI GGCC 1 cut(s) 964
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 1 cut(s) 767
BspT107I GGYRCC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 1091
BssMI GATC 1 cut(s) 772
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 3 cut(s) 106, 476, 632
Bst6I CTCTTC 2 cut(s) 369, 495
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 301, 405, 666
BstDEI CTNAG 2 cut(s) 125, 636
BstENI CCTNNNNNAGG 2 cut(s) 304, 992
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 1 cut(s) 775
BstMAI GTCTC 2 cut(s) 801, 914
BstMBI GATC 1 cut(s) 772
BstMWI GCNNNNNNNGC 2 cut(s) 323, 681
BstNI CCWGG 1 cut(s) 1092
BstSCI CCNGG 1 cut(s) 1090
BstSFI CTRYAG 3 cut(s) 253, 847, 1074
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 733, 1060
BstV2I GAAGAC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 481, 701
Cac8I GCNNGC 3 cut(s) 301, 405, 666
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 1 cut(s) 347
CseI GACGC 2 cut(s) 401, 997
Csp6I GTAC 1 cut(s) 107
CviAII CATG 5 cut(s) 88, 144, 191, 757, 793
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 125, 636
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
DraI TTTAAA 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 369, 495
EarI CTCTTC 2 cut(s) 369, 495
Eco88I CYCGRG 1 cut(s) 75
EcoNI CCTNNNNNAGG 2 cut(s) 304, 992
EcoRI GAATTC 1 cut(s) 927
EcoRII CCWGG 1 cut(s) 1090
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 5 cut(s) 91, 147, 194, 760, 796
FaqI GGGAC 1 cut(s) 115
FatI CATG 5 cut(s) 87, 143, 190, 756, 792
Fnu4HI GCNGC 2 cut(s) 747, 1074
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 747, 1074
FspBI CTAG 4 cut(s) 242, 327, 669, 681
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 747, 1074
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 1 cut(s) 964
HgaI GACGC 2 cut(s) 401, 997
HhaI GCGC 1 cut(s) 347
Hin1II CATG 5 cut(s) 91, 147, 194, 760, 796
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 4 cut(s) 129, 542, 693, 907
HphI GGTGA 2 cut(s) 422, 1010
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 268, 933, 1034
Hpy188III TCNNGA 2 cut(s) 557, 836
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 786, 810, 893
HpyCH4III ACNGT 3 cut(s) 106, 476, 632
HpyCH4V TGCA 9 cut(s) 91, 211, 280, 303, 317, 403, 826, 1076, 1083
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 681
HpyF3I CTNAG 2 cut(s) 125, 636
Hsp92II CATG 5 cut(s) 91, 147, 194, 760, 796
HspAI GCGC 1 cut(s) 345
KpnI GGTACC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 772
Lsp1109I GCAGC 2 cut(s) 733, 1060
LweI GCATC 3 cut(s) 286, 404, 663
MaeI CTAG 4 cut(s) 242, 327, 669, 681
MaeIII GTNAC 2 cut(s) 338, 1048
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 7 cut(s) 19, 24, 211, 386, 458, 491, 512
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 5 cut(s) 62, 927, 947, 968, 1053
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 2 cut(s) 176, 884
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 4 cut(s) 39, 224, 810, 891
MslI CAYNNNNRTG 2 cut(s) 96, 285
MspR9I CCNGG 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 1092
MwoI GCNNNNNNNGC 2 cut(s) 323, 681
NdeII GATC 1 cut(s) 772
NlaIII CATG 5 cut(s) 91, 147, 194, 760, 796
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 129, 542, 693
PkrI GCNGC 2 cut(s) 748, 1075
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
Psp6I CCWGG 1 cut(s) 1090
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 1078
PstNI CAGNNNCTG 1 cut(s) 1073
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 96, 285
SaqAI TTAA 4 cut(s) 39, 224, 810, 891
SatI GCNGC 2 cut(s) 747, 1074
Sau3AI GATC 1 cut(s) 772
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 1092
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 3 cut(s) 286, 404, 663
SfcI CTRYAG 3 cut(s) 253, 847, 1074
SmiMI CAYNNNNRTG 2 cut(s) 96, 285
Sse9I AATT 5 cut(s) 62, 927, 947, 968, 1053
SsiI CCGC 2 cut(s) 133, 1060
SspMI CTAG 4 cut(s) 242, 327, 669, 681
StyD4I CCNGG 1 cut(s) 1090
TaaI ACNGT 3 cut(s) 106, 476, 632
TaqI TCGA 2 cut(s) 498, 771
TasI AATT 5 cut(s) 62, 927, 947, 968, 1053
TfiI GAWTC 3 cut(s) 129, 542, 693
Tru1I TTAA 4 cut(s) 39, 224, 810, 891
Tru9I TTAA 4 cut(s) 39, 224, 810, 891
TscAI CASTG 2 cut(s) 481, 708
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 2 cut(s) 746, 1073
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 7 cut(s) 158, 459, 480, 504, 745, 878, 1038
TspRI CASTG 2 cut(s) 481, 708
VneI GTGCAC 1 cut(s) 278
XagI CCTNNNNNAGG 2 cut(s) 304, 992
XapI RAATTY 2 cut(s) 927, 968
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 4 cut(s) 242, 327, 669, 681
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.