Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000165.1

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

14391 .. 15347

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000165.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggttgatcataagtactatttccaaaagggttggaacgaatttgtgagtgaaactggcttaagggttaaggaaattctagtttttcattatactggaaattcagacttctctgtcgacatatatggaaaaaatactatcaaaaaggtgtatgtaaaagaaagtcatgccttcccgggatcaaaagatgtcggcatgcccacagatattgactatcctatggaagaagctgatgaagatgatgatccgtctgttgaaatattggatgatgttgcaccatacccaacaagtagaggagagaaatatcagatattaagtcctttgcctcacattgattatgattttgacattcaagatgacatatatgatgagaatgagcatgaaagttataaaaatgaagaagatgaaaatgaggaagatgttgataatgaagatgaggatgaacatgaaagtgaggaagaagatgtaaatgaaagtctgagtgaagaagaaaatgaaactgcggaacatgttgattttggagatgaggatcaaaatgaaagtgaagaagaaaatgaaagtgaagatgaggatcacaatgatgatgatgacgacgacaacgacgactctgttgaaaccttgagcgaaaaaccaccatgctggaaaacaagaggtaaacctccattagaattgcagctccgcaagagcaagagaacatgttctaatactaaagctcaaagcaatattaaagatgcaggtggctcttccagaactgaaagtttccgaaaacctgagatacctaagaagatgaatctagctatggaagttggaaagcataatgctcttcagagagctcttgattttaaatctaaatctgtaaatccttgtcttgtgcttcccatgcgtgcctcttatgcccgtggaagttacttggtaagactgctacccatcacaacttttgctaagttctttatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

318

Amino Acids

36.64

Weight (kDa)

4.32

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AarI	CACCTGC	1 cut(s)	725
AasI	GACNNNNNNGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	2 cut(s)	503, 679
AclWI	GGATC	4 cut(s)	187, 239, 537, 579
AcsI	RAATTY	3 cut(s)	41, 75, 100
AcuI	CTGAAG	1 cut(s)	809
AfaI	GTAC	1 cut(s)	17
AflII	CTTAAG	1 cut(s)	61
AflIII	ACRYGT	2 cut(s)	508, 695
AgsI	TTSAA	3 cut(s)	257, 353, 614
AluBI	AGCT	5 cut(s)	230, 676, 713, 797, 833
AluI	AGCT	5 cut(s)	230, 676, 713, 797, 833
Alw21I	GWGCWC	1 cut(s)	835
AlwI	GGATC	4 cut(s)	187, 239, 537, 579
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	3 cut(s)	41, 75, 100
Asp700I	GAANNNNTTC	1 cut(s)	697
AsuC2I	CCSGG	2 cut(s)	176, 177
AvaI	CYCGRG	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	1 cut(s)	935
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	176, 177
BfaI	CTAG	2 cut(s)	80, 794
BfrI	CTTAAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	176, 177
BmeT110I	CYCGRG	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	176, 177
BmsI	GCATC	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	2 cut(s)	176, 177
BsaBI	GATNNNNATC	3 cut(s)	243, 528, 570
BsaJI	CCNNGG	2 cut(s)	175, 898
Bse1I	ACTGG	2 cut(s)	61, 100
Bse8I	GATNNNNATC	3 cut(s)	243, 528, 570
BseDI	CCNNGG	2 cut(s)	175, 898
BseGI	GGATG	2 cut(s)	271, 445
BseJI	GATNNNNATC	3 cut(s)	243, 528, 570
BseMII	CTCAG	2 cut(s)	470, 762
BseNI	ACTGG	2 cut(s)	61, 100
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	835
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	7, 179, 244, 529, 571
BspACI	CCGC	2 cut(s)	503, 679
BspCNI	CTCAG	2 cut(s)	471, 763
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	4 cut(s)	187, 239, 537, 579
BspQI	GCTCTTC	2 cut(s)	748, 828
BspTI	CTTAAG	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	61, 100
BssECI	CCNNGG	2 cut(s)	175, 898
BssMI	GATC	5 cut(s)	7, 179, 244, 529, 571
Bst6I	CTCTTC	2 cut(s)	748, 828
BstAFI	CTTAAG	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	197, 885
BstDEI	CTNAG	4 cut(s)	479, 771, 780, 942
BstDSI	CCRYGG	1 cut(s)	898
BstF5I	GGATG	2 cut(s)	271, 445
BstKTI	GATC	5 cut(s)	10, 182, 247, 532, 574
BstMBI	GATC	5 cut(s)	7, 179, 244, 529, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	880, 893
BstNSI	RCATGY	3 cut(s)	199, 512, 699
BstSCI	CCNGG	2 cut(s)	174, 175
BstV1I	GCAGC	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	898
BtsCI	GGATG	2 cut(s)	271, 445
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	197, 885
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	8 cut(s)	167, 196, 380, 446, 509, 636, 696, 880
CviJI	RGCY	7 cut(s)	60, 230, 676, 713, 741, 797, 833
CviKI_1	RGCY	7 cut(s)	60, 230, 676, 713, 741, 797, 833
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	4 cut(s)	479, 771, 780, 942
DpnI	GATC	5 cut(s)	9, 181, 246, 531, 573
DpnII	GATC	5 cut(s)	7, 179, 244, 529, 571
DraI	TTTAAA	1 cut(s)	844
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	748, 828
EarI	CTCTTC	2 cut(s)	748, 828
Ecl136II	GAGCTC	1 cut(s)	833
Eco24I	GRGCYC	1 cut(s)	835
Eco53kI	GAGCTC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	833
EcoT38I	GRGCYC	1 cut(s)	835
FaeI	CATG	8 cut(s)	170, 199, 383, 449, 512, 639, 699, 883
FatI	CATG	8 cut(s)	166, 195, 379, 445, 508, 635, 695, 879
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	2 cut(s)	278, 452
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	2 cut(s)	80, 794
GluI	GCNGC	1 cut(s)	674
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	8 cut(s)	170, 199, 383, 449, 512, 639, 699, 883
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	605, 790
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	118, 656
Hpy188I	TCNGA	5 cut(s)	106, 309, 480, 764, 828
Hpy188III	TCNNGA	3 cut(s)	353, 747, 836
Hpy8I	GTNNAC	2 cut(s)	118, 656
Hpy99I	CGWCG	2 cut(s)	596, 605
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	275, 673, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	880, 893
HpyF3I	CTNAG	4 cut(s)	479, 771, 780, 942
Hsp92II	CATG	8 cut(s)	170, 199, 383, 449, 512, 639, 699, 883
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 179, 244, 529, 571
LguI	GCTCTTC	2 cut(s)	748, 828
LmnI	GCTCC	1 cut(s)	681
LpnPI	CCDG	7 cut(s)	42, 81, 189, 625, 720, 760, 783
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	2 cut(s)	80, 794
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	5 cut(s)	9, 181, 246, 531, 573
MboI	GATC	5 cut(s)	7, 179, 244, 529, 571
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	4 cut(s)	41, 75, 100, 668
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	2 cut(s)	14, 787
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	5 cut(s)	62, 69, 314, 726, 843
MslI	CAYNNNNRTG	2 cut(s)	450, 579
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	176, 177
MwoI	GCNNNNNNNGC	2 cut(s)	880, 893
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	5 cut(s)	7, 179, 244, 529, 571
NlaIII	CATG	8 cut(s)	170, 199, 383, 449, 512, 639, 699, 883
NspI	RCATGY	3 cut(s)	199, 512, 699
PaeI	GCATGC	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	725
PciI	ACATGT	2 cut(s)	508, 695
PciSI	GCTCTTC	2 cut(s)	748, 828
PcsI	WCGNNNNNNNCGW	2 cut(s)	597, 600
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	790
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	2 cut(s)	508, 695
PsiI	TTATAA	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	835
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	2 cut(s)	450, 579
SacI	GAGCTC	1 cut(s)	835
SalI	GTCGAC	1 cut(s)	116
SapI	GCTCTTC	2 cut(s)	748, 828
SaqAI	TTAA	5 cut(s)	62, 69, 314, 726, 843
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	5 cut(s)	7, 179, 244, 529, 571
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	176, 177
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	721
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	450, 579
SmlI	CTYRAG	2 cut(s)	61, 619
SmoI	CTYRAG	2 cut(s)	61, 619
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	41, 75, 100, 668
SsiI	CCGC	2 cut(s)	503, 679
SspI	AATATT	2 cut(s)	261, 724
SspMI	CTAG	2 cut(s)	80, 794
SstI	GAGCTC	1 cut(s)	835
StyD4I	CCNGG	2 cut(s)	174, 175
TaqI	TCGA	1 cut(s)	117
TasI	AATT	4 cut(s)	41, 75, 100, 668
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	5 cut(s)	62, 69, 314, 726, 843
Tru9I	TTAA	5 cut(s)	62, 69, 314, 726, 843
TseI	GCWGC	1 cut(s)	673
TspGWI	ACGGA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	61
XapI	RAATTY	3 cut(s)	41, 75, 100
XceI	RCATGY	3 cut(s)	199, 512, 699
XmaI	CCCGGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	2 cut(s)	80, 794
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.