Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000593

Physical Location & Seq

Genomic Coordinates Reverse (-)

58873953 .. 58875780

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCAAGAAAAAGAAAGCCTTCCTTTTTCAAGGTTCTTATAGGTGACTTCTCTGACAAGCTGAGAATCCCACAGGCTTTTCGTAAGCATTTGGCTGCTAGTGTACTTCAACAATCCCATCTTCGGACCCCTGCTGGAACTTGGCTTGTTGATGTGAAAAGCGATAACGGCAGGTTCTTTTTACAAAAGGGTTGGAAGCAATTTGTGCATGATAATGGTTTAAAGCTCGGAGAGTTTCTAATTTTCCGATATGCTGGAAATTCAAAATTCTATGTTGACATATATGGAAGACATGGTTGCAAAAAGGAGTTTGTAATGCCGGCTAGGAGAAGTGAAAAACCATTTAAAAAGAGGGACGGTAATGAGAGTCAGAGAACAAACGCTGTTATGAGTTCCAGCATACATCCAAAGAAGAAGATGGATTATCAGAAGTTAAAAGGTTCAGCTGGTGAAAATAAAACTAGTCAAGAAACTATTTCCGTCAAATCTGAACCAATTGATTTTGAATTGGAAACATCTATGGATATTGACGAGTCAATTAGAAATATGAATTCTAGAGAGACTTTGTCTTTCCAACCTCAAGTGGCAAATGGTGCTCTAGAAGCAGCCAACAGATACTCATCGAGCCATCCTTGCTTCAGAACTCTTTTGACCGAAACTTATGTGACCAAAGGAATTCTGCATATACCATGTACCTTTGTGAAAGATTATATTAAGATAAAGAAAAGGACAGCTGAGCTCCAAGTTTCAAACAGGTTTTGGTCTGTGAAGTGGATTAATGACTCTCGCTCAAGTAGATTCTCTCAAGGTTGGAATGAGTTTGTAAGGCAGAATGATCTGAAAGTGGGAGATGTTTGTGTCTTTGAGCTGATTAAGCAGACGAATGATGTTGTGATGATGAAAGTTTCTTTTTTCAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

307

Amino Acids

35.54

Weight (kDa)

9.84

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 96	4.2e-14	B3 DNA binding domain
B3	PF02362	213 - 296	1.8e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14620 FvH4_1g14630 FvH4_1g14630 FvH4_1g14640 FvH4_1g23530 FvH4_2g13150 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g14275 FvH4_5g19930 FvH4_5g19930 FvH4_7g04060 FvH4_7g04060
malus_domestica	MD15G1273900.v1.1
prunus_persica	Prupe.7G144000_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144100_v2.0.a1 Prupe.7G144200_v2.0.a1
pyrus_communis	pycom02g12600 pycom15g23740
rosa_chinensis	RchiOBHm_Chr1g0350161 RchiOBHm_Chr2g0103391 RchiOBHm_Chr2g0103401 RchiOBHm_Chr2g0103411 RchiOBHm_Chr2g0118951
rosa_laevigata	RLG00000013545 RLG00000017233 RLG00000017234 RLG00000018437 RLG00000028501
rosa_multiflora	Rmu_sc0000165.1_g000005 Rmu_sc0002434.1_g000007 Rmu_sc0002560.1_g000015 Rmu_sc0021123.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124370 Rroxscaffold_2G00124550 Rroxscaffold_2G00139650 Rroxscaffold_2G00139660 Rroxscaffold_4G00305040 Rroxscaffold_7G00194250
rosa_rugosa	Rorug01G0208600 Rorug01G0208700 Rorug01G0208800 Rorug01G0208800 Rorug01G0208900 Rorug02G0114700 Rorug02G0114800 Rorug02G0219900 Rorug02G0220000 Rorug06G0081400 Rorug06G0081500
rosa_samantha	Rh1AG224800 Rh1DG220900 Rh1DG221000 Rh2AG162900 Rh2AG163000 Rh2AG163100 Rh2AG277000 Rh2BG170000 Rh2BG170100 Rh2BG170200 Rh2BG288900 Rh2CG170100 Rh2DG284100 Rh2DG303000 Rh6AG197500 Rh6BG201300 Rh6CG202100
rosa_wichuraiana	Rw1G019210 Rw1G019320 Rw2G012800 Rw2G012810 Rw2G012820 Rw2G022060 Rw6G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AcsI	RAATTY	4 cut(s)	259, 266, 550, 675
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	2 cut(s)	105, 694
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	5 cut(s)	31, 110, 264, 506, 750
AhlI	ACTAGT	1 cut(s)	461
AluBI	AGCT	6 cut(s)	61, 226, 446, 734, 739, 868
AluI	AGCT	6 cut(s)	61, 226, 446, 734, 739, 868
Alw21I	GWGCWC	2 cut(s)	598, 741
Alw26I	GTCTC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	95, 605
ApoI	RAATTY	4 cut(s)	259, 266, 550, 675
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	56, 461
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	598, 741
BbvI	GCAGC	2 cut(s)	82, 617
BccI	CCATC	3 cut(s)	126, 412, 636
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	554
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	5 cut(s)	99, 324, 462, 555, 599
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	2 cut(s)	96, 606
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	2 cut(s)	97, 607
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	295
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	3 cut(s)	564, 775, 789
BsaBI	GATNNNNATC	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	619
BseGI	GGATG	2 cut(s)	403, 628
BseJI	GATNNNNATC	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	53, 726
BseXI	GCAGC	2 cut(s)	82, 617
BsiHKAI	GWGCWC	2 cut(s)	598, 741
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	598, 741
Bsp143I	GATC	1 cut(s)	835
Bsp1720I	GCTNAGC	1 cut(s)	735
BspCNI	CTCAG	2 cut(s)	54, 727
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	319
BssMI	GATC	1 cut(s)	835
Bst4CI	ACNGT	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	205, 593
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	62, 735
BstF5I	GGATG	2 cut(s)	403, 628
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 205, 593, 602, 633, 874
BstV1I	GCAGC	2 cut(s)	82, 617
BstV2I	GAAGAC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	403, 628
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	104, 693
CviAII	CATG	3 cut(s)	209, 293, 690
CviQI	GTAC	2 cut(s)	104, 693
DdeI	CTNAG	2 cut(s)	62, 735
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
DraI	TTTAAA	2 cut(s)	222, 346
Ecl136II	GAGCTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	739
EcoRI	GAATTC	2 cut(s)	550, 675
EcoT38I	GRGCYC	1 cut(s)	741
FaeI	CATG	3 cut(s)	212, 296, 693
FalI	AAGNNNNNCTT	3 cut(s)	36, 8, 40
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	208, 292, 689
Fnu4HI	GCNGC	2 cut(s)	96, 606
FokI	GGATG	2 cut(s)	390, 615
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	2 cut(s)	96, 606
FspBI	CTAG	5 cut(s)	99, 324, 462, 555, 599
GluI	GCNGC	2 cut(s)	96, 606
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	3 cut(s)	212, 296, 693
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	5 cut(s)	66, 367, 533, 782, 798
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	56, 461
Hpy166II	GTNNAC	2 cut(s)	104, 277
Hpy188III	TCNNGA	3 cut(s)	467, 555, 599
Hpy8I	GTNNAC	2 cut(s)	104, 277
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	3 cut(s)	208, 300, 682
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 205, 593, 602, 633, 874
HpyF3I	CTNAG	2 cut(s)	62, 735
Hsp92II	CATG	3 cut(s)	212, 296, 693
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	835
LmnI	GCTCC	1 cut(s)	744
LpnPI	CCDG	9 cut(s)	59, 120, 144, 157, 240, 333, 409, 432, 739
Lsp1109I	GCAGC	2 cut(s)	82, 617
MaeI	CTAG	5 cut(s)	99, 324, 462, 555, 599
MaeIII	GTNAC	2 cut(s)	44, 664
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	4 cut(s)	113, 300, 424, 427
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	598, 741
MluCI	AATT	9 cut(s)	200, 240, 259, 266, 495, 506, 537, 550, 675
MlyI	GAGTC	3 cut(s)	376, 542, 776
MmeI	TCCRAC	3 cut(s)	173, 598, 791
MnlI	CCTC	2 cut(s)	345, 588
MroNI	GCCGGC	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	6 cut(s)	221, 345, 434, 714, 777, 873
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	446, 734
MspI	CCGG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	495
MwoI	GCNNNNNNNGC	6 cut(s)	168, 205, 593, 602, 633, 874
NaeI	GCCGGC	1 cut(s)	321
NdeII	GATC	1 cut(s)	835
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	212, 296, 693
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	44, 664
PdiI	GCCGGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	66, 798
PflFI	GACNNNGTC	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	97, 607
PleI	GAGTC	3 cut(s)	375, 541, 776
PpsI	GAGTC	3 cut(s)	375, 541, 776
PshBI	ATTAAT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	565
PvuII	CAGCTG	2 cut(s)	446, 734
RsaI	GTAC	2 cut(s)	105, 694
RsaNI	GTAC	2 cut(s)	104, 693
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	6 cut(s)	221, 345, 434, 714, 777, 873
SatI	GCNGC	2 cut(s)	96, 606
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	3 cut(s)	376, 542, 776
SduI	GDGCHC	2 cut(s)	598, 741
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	579, 790, 804
SmoI	CTYRAG	3 cut(s)	579, 790, 804
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	9 cut(s)	200, 240, 259, 266, 495, 506, 537, 550, 675
SspMI	CTAG	5 cut(s)	99, 324, 462, 555, 599
SstI	GAGCTC	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	623
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	9 cut(s)	200, 240, 259, 266, 495, 506, 537, 550, 675
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	66, 798
Tru1I	TTAA	6 cut(s)	221, 345, 434, 714, 777, 873
Tru9I	TTAA	6 cut(s)	221, 345, 434, 714, 777, 873
TseFI	GTSAC	2 cut(s)	44, 664
TseI	GCWGC	2 cut(s)	95, 605
Tsp45I	GTSAC	2 cut(s)	44, 664
TspDTI	ATGAA	2 cut(s)	563, 914
TspGWI	ACGGA	1 cut(s)	469
Tth111I	GACNNNGTC	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	4 cut(s)	259, 266, 550, 675
XbaI	TCTAGA	2 cut(s)	554, 598
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	5 cut(s)	99, 324, 462, 555, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.