RchiOBHm_Chr2g0103411

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000593
Physical Location & Seq
Reverse (-)
14972071 .. 14974844
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47777

Sequence Viewer

Length: 1089 bp
ATGGCACCAAGAAGAAAACTACCCTCTTTTTTCAAAATTGTTCCGGGTGATCAGTTCACTAACAAGTTGAAAATCCCAAGAGAATTTCTCCAGCATTTCCATGGAAACATACCTCACCAGTGCCGTCTTCAAACGGCAGCCCGAACTTGGGCTGTCGATGTGGAAGAGGTTAATAACAAGTTCTATTTCCAAAAGGGGTGGAATGAATTTGTGCAAGACAATGGCTTAAAGTATGGTGAACTTCTAGTATTCCATTATGCTGGAAACTCAGACTTCCATGTGGATATCTTTGGAAAAAATACCTGTGGAAAGCTGTTTGTAATGCCTGAGATAGAAGAAGCTAATGAAGAAGATGATGATGTATCTCTTCAAATCTCAGACGACTCTCCAGAGTCAAGTCCTCCACCACAAAAGAAATACAAAACAAGTTCGAGTGATAAAGGACAGATGAAAAACAAAGAAGCACATTGGTCCAAATCAAAAATGAAAAAGAAAGATAAAGGAGGCACCTCTAGCACACAAAGATTCACAAGACAAAAACTTGAGCCACGGTGGAGAGCTCATGTGAGAGCTGAAGCATTCAAATTCAAAAACCCTTCTGCTTTCTTGGTTTCCATGAAGCCCTCCTACATCAAGTATAAATTTGTGTGGTTGCCATCAGAGTTCACCATGCTAGTGAAACCTCTTATTGAGAACTCTGGTTATGTTACCCTTCGGGTTTCAGATGGAAGAGTGAAAACTTGGCAGGCTAAATTGACTTGTAATGACGTTACTACCAACAGAAGCAAATTACATGGTAGTTGGTCTAAATTCATGCGAGACAATAATTTGAAAGAGGGTGATCTGTGTGCATTTATGTTGATTAAAGACACTACAATTTTAATCGAAGTTGTCATTTTCCGGACCAAAGAAGCAGCAACTTGCACCTTCTCCCCAGACATGTCTGATAATGAGGATCATGAGAAGGATGATGAAGATGATGATGATGAAGAGGGTGATGAGGAAAATGAAGATGAAGAGGAGGAGGAGGAGGAAGATGATGATGATTCTCGTGAAACCGTCGACTATGTTTCTAGTGATTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

362

Amino Acids

41.92

Weight (kDa)

5.11

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 10 - 99 1.2e-15 B3 DNA binding domain
B3 PF02362 204 - 301 9.8e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 506
AccI GTMKAC 1 cut(s) 1062
AccIII TCCGGA 1 cut(s) 900
AclWI GGATC 1 cut(s) 963
AcsI RAATTY 5 cut(s) 83, 206, 584, 641, 809
AcuI CTGAAG 1 cut(s) 594
AfiI CCNNNNNNNGG 2 cut(s) 147, 148
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 7 cut(s) 34, 70, 131, 371, 583, 589, 832
AluBI AGCT 4 cut(s) 313, 341, 560, 572
AluI AGCT 4 cut(s) 313, 341, 560, 572
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 813
AlwI GGATC 1 cut(s) 963
Aor13HI TCCGGA 1 cut(s) 900
ApeKI GCWGC 2 cut(s) 137, 914
ApoI RAATTY 5 cut(s) 83, 206, 584, 641, 809
AspS9I GGNCC 2 cut(s) 471, 903
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 6 cut(s) 59, 107, 248, 658, 851, 1007
AvaII GGWCC 2 cut(s) 471, 903
BanI GGYRCC 2 cut(s) 4, 506
BanII GRGCYC 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BauI CACGAG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 2 cut(s) 149, 926
BccI CCATC 2 cut(s) 664, 719
BceAI ACGGC 2 cut(s) 108, 150
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 5 cut(s) 245, 513, 674, 1074, 1083
BisI GCNGC 2 cut(s) 138, 915
BlsI GCNGC 2 cut(s) 139, 916
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 471, 903
BmgT120I GGNCC 2 cut(s) 471, 903
BmiI GGNNCC 2 cut(s) 6, 508
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpmI CTGGAG 2 cut(s) 74, 372
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 100, 548
BsaWI WCCGGW 1 cut(s) 900
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 148
Bse1I ACTGG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 900
BseDI CCNNGG 2 cut(s) 100, 548
BseGI GGATG 1 cut(s) 973
BseLI CCNNNNNNNGG 2 cut(s) 147, 148
BseMII CTCAG 3 cut(s) 282, 318, 390
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 4 cut(s) 1034, 1037, 1040, 1043
BseXI GCAGC 2 cut(s) 149, 926
BshNI GGYRCC 2 cut(s) 4, 506
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 2 cut(s) 44, 901
BslI CCNNNNNNNGG 2 cut(s) 147, 148
BsmAI GTCTC 1 cut(s) 813
BsmI GAATGC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 562
Bsp13I TCCGGA 1 cut(s) 900
Bsp143I GATC 3 cut(s) 49, 841, 955
Bsp19I CCATGG 1 cut(s) 100
BspCNI CTCAG 3 cut(s) 281, 319, 389
BspEI TCCGGA 1 cut(s) 900
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 6, 508
BspPI GGATC 1 cut(s) 963
BspT107I GGYRCC 2 cut(s) 4, 506
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 100, 548
BssMI GATC 3 cut(s) 49, 841, 955
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 1050
Bst4CI ACNGT 2 cut(s) 552, 1060
Bst6I CTCTTC 5 cut(s) 159, 372, 724, 984, 1011
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 3 cut(s) 268, 327, 376
BstDSI CCRYGG 2 cut(s) 100, 548
BstF5I GGATG 1 cut(s) 973
BstKTI GATC 3 cut(s) 52, 844, 958
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 3 cut(s) 49, 841, 955
BstMWI GCNNNNNNNGC 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 149, 926
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 260
BtgI CCRYGG 2 cut(s) 100, 548
BtsCI GGATG 1 cut(s) 973
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 747
CciI TCATGA 1 cut(s) 958
Cfr13I GGNCC 2 cut(s) 471, 903
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 9 cut(s) 101, 278, 563, 616, 670, 794, 814, 940, 959
DdeI CTNAG 3 cut(s) 268, 327, 376
DpnI GATC 3 cut(s) 51, 843, 957
DpnII GATC 3 cut(s) 49, 841, 955
Eam1104I CTCTTC 5 cut(s) 159, 372, 724, 984, 1011
EarI CTCTTC 5 cut(s) 159, 372, 724, 984, 1011
Ecl136II GAGCTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 562
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 471, 903
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 560
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 9 cut(s) 104, 281, 566, 619, 673, 797, 817, 943, 962
FatI CATG 9 cut(s) 100, 277, 562, 615, 669, 793, 813, 939, 958
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 2 cut(s) 138, 915
FokI GGATG 1 cut(s) 980
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 2 cut(s) 138, 915
FspBI CTAG 5 cut(s) 245, 513, 674, 1074, 1083
GluI GCNGC 2 cut(s) 138, 915
GsuI CTGGAG 2 cut(s) 74, 372
HapII CCGG 2 cut(s) 44, 901
Hin1II CATG 9 cut(s) 104, 281, 566, 619, 673, 797, 817, 943, 962
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 5 cut(s) 383, 392, 525, 1046, 1079
HpaII CCGG 2 cut(s) 44, 901
HphI GGTGA 6 cut(s) 59, 107, 248, 658, 851, 1007
Hpy166II GTNNAC 4 cut(s) 57, 239, 666, 1063
Hpy188I TCNGA 5 cut(s) 271, 379, 661, 724, 946
Hpy188III TCNNGA 4 cut(s) 389, 901, 959, 1052
Hpy8I GTNNAC 4 cut(s) 57, 239, 666, 1063
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 4 cut(s) 606, 722, 937, 958
HpyCH4III ACNGT 2 cut(s) 552, 1060
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 3 cut(s) 214, 851, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 513
HpyF3I CTNAG 3 cut(s) 268, 327, 376
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 9 cut(s) 104, 281, 566, 619, 673, 797, 817, 943, 962
Kpn2I TCCGGA 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 841, 955
Lsp1109I GCAGC 2 cut(s) 149, 926
MaeI CTAG 5 cut(s) 245, 513, 674, 1074, 1083
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 2 cut(s) 706, 769
MalI GATC 3 cut(s) 51, 843, 957
MboI GATC 3 cut(s) 49, 841, 955
MhlI GDGCHC 1 cut(s) 562
MlyI GAGTC 2 cut(s) 377, 401
MroI TCCGGA 1 cut(s) 900
MseI TTAA 4 cut(s) 171, 227, 864, 881
MslI CAYNNNNRTG 2 cut(s) 99, 674
MspI CCGG 2 cut(s) 44, 901
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 513
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 100
NdeII GATC 3 cut(s) 49, 841, 955
NlaIII CATG 9 cut(s) 104, 281, 566, 619, 673, 797, 817, 943, 962
NlaIV GGNNCC 2 cut(s) 6, 508
NspI RCATGY 1 cut(s) 943
PagI TCATGA 1 cut(s) 958
PciI ACATGT 1 cut(s) 939
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 3 cut(s) 525, 1046, 1079
PkrI GCNGC 2 cut(s) 139, 916
PleI GAGTC 2 cut(s) 377, 400
PpsI GAGTC 2 cut(s) 377, 400
PscI ACATGT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 6, 508
PspPI GGNCC 2 cut(s) 471, 903
RseI CAYNNNNRTG 2 cut(s) 99, 674
SacI GAGCTC 1 cut(s) 562
SalI GTCGAC 1 cut(s) 1061
SaqAI TTAA 4 cut(s) 171, 227, 864, 881
SatI GCNGC 2 cut(s) 138, 915
Sau3AI GATC 3 cut(s) 49, 841, 955
Sau96I GGNCC 2 cut(s) 471, 903
SchI GAGTC 2 cut(s) 377, 401
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 562
SinI GGWCC 2 cut(s) 471, 903
SmiMI CAYNNNNRTG 2 cut(s) 99, 674
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SspMI CTAG 5 cut(s) 245, 513, 674, 1074, 1083
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 552, 1060
TaiI ACGT 1 cut(s) 771
TaqI TCGA 4 cut(s) 156, 431, 885, 1062
TfiI GAWTC 3 cut(s) 525, 1046, 1079
Tru1I TTAA 4 cut(s) 171, 227, 864, 881
Tru9I TTAA 4 cut(s) 171, 227, 864, 881
TscAI CASTG 1 cut(s) 125
TseI GCWGC 2 cut(s) 137, 914
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 471, 903
XapI RAATTY 5 cut(s) 83, 206, 584, 641, 809
XceI RCATGY 1 cut(s) 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 1062
XspI CTAG 5 cut(s) 245, 513, 674, 1074, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.