Rorug01G0208600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000336
Physical Location & Seq
Forward (+)
29417447 .. 29420024
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0208600.1

Sequence Viewer

Length: 441 bp
ATGTGCCAAACACGTGACTATAAAGCTTTTGTTCAGCACCCCTATTTTCTCCAACAGCAAACCAAAGACCGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGCAACAGGAGAGAGTGAGTGAGATGGCGCTGAGAGCAGCCCTTCTGCGGCACGTGCGAGTTCCACTACAAACCCTAAACCCAGCGGTAACCCTAACCGGACCCAAATGGGGCCCACCTCCTCTCCGGTGGATGTCTTCGCACGACGATCATCTCACCAAAAACGAGGTCACCGACAGAGTCCTCTCCGTCGTCAAGTGCTTCCCCAAAGTCGATCCTTCTACGAAACTCTACCACAATTTAGGTCCTCGACTACTAAGATCCGGAGATGTTGGGTTTCGTAGACAAAAGTGGATTACGAATGATTGCTTTTCATGTGTATTACTCTGCTTCGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

146

Amino Acids

17.16

Weight (kDa)

9.94

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 382
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 2 cut(s) 148, 185
AclWI GGATC 2 cut(s) 308, 354
AcvI CACGTG 2 cut(s) 14, 154
AfiI CCNNNNNNNGG 2 cut(s) 147, 209
AflIII ACRYGT 1 cut(s) 11
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 2 cut(s) 308, 354
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 1 cut(s) 211
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 4 cut(s) 200, 211, 212, 344
AsuHPI GGTGA 2 cut(s) 247, 262
AvaII GGWCC 2 cut(s) 200, 344
BaeGI GKGCMC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 215
BbrPI CACGTG 2 cut(s) 14, 154
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 2 cut(s) 138, 149
BlsI GCNGC 2 cut(s) 139, 150
Bme18I GGWCC 2 cut(s) 200, 344
BmgT120I GGNCC 4 cut(s) 200, 211, 212, 344
BmiI GGNNCC 3 cut(s) 202, 212, 213
BpiI GAAGAC 1 cut(s) 228
BsaAI YACGTR 2 cut(s) 14, 154
BsaWI WCCGGW 3 cut(s) 197, 225, 362
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 209
BseAI TCCGGA 1 cut(s) 362
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 147, 209
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 213
BsiSI CCGG 3 cut(s) 198, 226, 363
BslI CCNNNNNNNGG 2 cut(s) 147, 209
BsnI GGCC 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 247, 313, 359
BspACI CCGC 2 cut(s) 148, 185
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 362
BspLI GGNNCC 3 cut(s) 202, 212, 213
BspPI GGATC 2 cut(s) 308, 354
BssMI GATC 3 cut(s) 247, 313, 359
BstBAI YACGTR 2 cut(s) 14, 154
BstDEI CTNAG 2 cut(s) 131, 356
BstEII GGTNACC 2 cut(s) 187, 268
BstF5I GGATG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 3 cut(s) 250, 316, 362
BstMBI GATC 3 cut(s) 247, 313, 359
BstMWI GCNNNNNNNGC 2 cut(s) 134, 154
BstPI GGTNACC 2 cut(s) 187, 268
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 237
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 4 cut(s) 200, 211, 212, 344
CviAII CATG 1 cut(s) 414
CviJI RGCY 3 cut(s) 26, 140, 213
CviKI_1 RGCY 3 cut(s) 26, 140, 213
DdeI CTNAG 2 cut(s) 131, 356
DpnI GATC 3 cut(s) 249, 315, 361
DpnII GATC 3 cut(s) 247, 313, 359
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 200, 344
Eco72I CACGTG 2 cut(s) 14, 154
Eco91I GGTNACC 2 cut(s) 187, 268
EcoO109I RGGNCCY 2 cut(s) 211, 344
EcoO65I GGTNACC 2 cut(s) 187, 268
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 1 cut(s) 417
FaiI YATR 3 cut(s) 21, 415, 437
FatI CATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 138, 149
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 138, 149
GlaI GCGC 1 cut(s) 129
GluI GCNGC 2 cut(s) 138, 149
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 213
HapII CCGG 3 cut(s) 198, 226, 363
HhaI GCGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 279
HpaII CCGG 3 cut(s) 198, 226, 363
HphI GGTGA 2 cut(s) 247, 262
Hpy166II GTNNAC 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 2 cut(s) 248, 293
HpyAV CCTTC 2 cut(s) 152, 327
HpyCH4IV ACGT 2 cut(s) 13, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 154
HpyF3I CTNAG 2 cut(s) 131, 356
HpySE526I ACGT 2 cut(s) 13, 153
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 1 cut(s) 128
Kpn2I TCCGGA 1 cut(s) 362
Kzo9I GATC 3 cut(s) 247, 313, 359
LpnPI CCDG 5 cut(s) 92, 195, 211, 239, 376
Lsp1109I GCAGC 1 cut(s) 149
MaeII ACGT 2 cut(s) 13, 153
MaeIII GTNAC 3 cut(s) 14, 187, 268
MalI GATC 3 cut(s) 249, 315, 361
MboI GATC 3 cut(s) 247, 313, 359
MboII GAAGA 7 cut(s) 94, 97, 100, 103, 106, 109, 228
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 5 cut(s) 228, 231, 259, 293, 357
MroI TCCGGA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 198, 226, 363
MwoI GCNNNNNNNGC 2 cut(s) 134, 154
NdeII GATC 3 cut(s) 247, 313, 359
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 3 cut(s) 202, 212, 213
NmuCI GTSAC 2 cut(s) 14, 268
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 139, 150
PleI GAGTC 1 cut(s) 287
PmaCI CACGTG 2 cut(s) 14, 154
PmlI CACGTG 2 cut(s) 14, 154
PpsI GAGTC 1 cut(s) 287
Ppu21I YACGTR 2 cut(s) 14, 154
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspCI CACGTG 2 cut(s) 14, 154
PspEI GGTNACC 2 cut(s) 187, 268
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 202, 212, 213
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 4 cut(s) 200, 211, 212, 344
PspPPI RGGWCCY 1 cut(s) 344
PsuI RGATCY 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 278
SatI GCNGC 2 cut(s) 138, 149
Sau3AI GATC 3 cut(s) 247, 313, 359
Sau96I GGNCC 4 cut(s) 200, 211, 212, 344
SchI GAGTC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 215
SetI ASST 6 cut(s) 16, 28, 156, 220, 270, 346
SinI GGWCC 2 cut(s) 200, 344
Sse9I AATT 1 cut(s) 337
SsiI CCGC 2 cut(s) 148, 185
TaiI ACGT 2 cut(s) 16, 156
TaqI TCGA 3 cut(s) 312, 349, 432
TaqII GACCGA 1 cut(s) 84
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 151
TseFI GTSAC 2 cut(s) 14, 268
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 2 cut(s) 14, 268
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 200, 344
XmiI GTMKAC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.