U-box domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_1 | PF00232 | 30 - 499 | 4.5e-158 | Glycosyl hydrolase family 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 622, 1073 |
| AccI | GTMKAC | 1 cut(s) | 962 |
| AciI | CCGC | 2 cut(s) | 521, 1397 |
| AclWI | GGATC | 5 cut(s) | 252, 453, 572, 778, 1292 |
| AcsI | RAATTY | 2 cut(s) | 539, 1123 |
| AdeI | CACNNNGTG | 1 cut(s) | 480 |
| AfaI | GTAC | 1 cut(s) | 425 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 327 |
| AgsI | TTSAA | 7 cut(s) | 419, 574, 836, 1093, 1326, 1410, 1483 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1306 |
| AjnI | CCWGG | 4 cut(s) | 39, 320, 618, 625 |
| AluBI | AGCT | 5 cut(s) | 93, 865, 1164, 1322, 1447 |
| AluI | AGCT | 5 cut(s) | 93, 865, 1164, 1322, 1447 |
| Alw26I | GTCTC | 5 cut(s) | 330, 518, 620, 1374, 1424 |
| AlwI | GGATC | 5 cut(s) | 252, 453, 572, 778, 1292 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1070 |
| AoxI | GGCC | 2 cut(s) | 170, 663 |
| ApeKI | GCWGC | 3 cut(s) | 90, 937, 1394 |
| ApoI | RAATTY | 2 cut(s) | 539, 1123 |
| AseI | ATTAAT | 1 cut(s) | 999 |
| AspLEI | GCGC | 1 cut(s) | 149 |
| AspS9I | GGNCC | 2 cut(s) | 170, 663 |
| AsuHPI | GGTGA | 5 cut(s) | 55, 245, 557, 565, 1216 |
| AsuNHI | GCTAGC | 2 cut(s) | 403, 1318 |
| AxyI | CCTNAGG | 2 cut(s) | 1149, 1461 |
| BanI | GGYRCC | 2 cut(s) | 622, 1073 |
| BanII | GRGCYC | 1 cut(s) | 853 |
| BbsI | GAAGAC | 1 cut(s) | 471 |
| BbvI | GCAGC | 3 cut(s) | 102, 924, 1381 |
| BccI | CCATC | 4 cut(s) | 155, 257, 1091, 1331 |
| BciT130I | CCWGG | 4 cut(s) | 41, 322, 620, 627 |
| BciVI | GTATCC | 1 cut(s) | 1394 |
| BclI | TGATCA | 2 cut(s) | 373, 1209 |
| BcoDI | GTCTC | 5 cut(s) | 330, 518, 620, 1374, 1424 |
| BfaI | CTAG | 2 cut(s) | 404, 1319 |
| BfmI | CTRYAG | 2 cut(s) | 658, 1035 |
| BfuI | GTATCC | 1 cut(s) | 1394 |
| BisI | GCNGC | 3 cut(s) | 91, 938, 1395 |
| BlsI | GCNGC | 3 cut(s) | 92, 939, 1396 |
| Bme1390I | CCNGG | 4 cut(s) | 41, 322, 620, 627 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1306 |
| BmgT120I | GGNCC | 2 cut(s) | 170, 663 |
| BmiI | GGNNCC | 3 cut(s) | 171, 624, 1075 |
| BmrFI | CCNGG | 4 cut(s) | 41, 322, 620, 627 |
| BmrI | ACTGGG | 2 cut(s) | 451, 486 |
| BmsI | GCATC | 4 cut(s) | 289, 623, 791, 1252 |
| BmtI | GCTAGC | 2 cut(s) | 407, 1322 |
| BmuI | ACTGGG | 2 cut(s) | 451, 486 |
| BpiI | GAAGAC | 1 cut(s) | 471 |
| BpmI | CTGGAG | 1 cut(s) | 602 |
| BpuEI | CTTGAG | 3 cut(s) | 438, 1241, 1433 |
| Bsa29I | ATCGAT | 1 cut(s) | 805 |
| BsaAI | YACGTR | 1 cut(s) | 427 |
| BsaBI | GATNNNNATC | 1 cut(s) | 249 |
| BsaI | GGTCTC | 4 cut(s) | 330, 620, 1374, 1424 |
| BsaJI | CCNNGG | 1 cut(s) | 459 |
| BsaWI | WCCGGW | 1 cut(s) | 1201 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 327 |
| Bse118I | RCCGGY | 1 cut(s) | 933 |
| Bse1I | ACTGG | 6 cut(s) | 136, 446, 481, 566, 1023, 1380 |
| Bse21I | CCTNAGG | 2 cut(s) | 1149, 1461 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 398, 1351 |
| Bse8I | GATNNNNATC | 1 cut(s) | 249 |
| BseBI | CCWGG | 4 cut(s) | 41, 322, 620, 627 |
| BseCI | ATCGAT | 1 cut(s) | 805 |
| BseDI | CCNNGG | 1 cut(s) | 459 |
| BseGI | GGATG | 6 cut(s) | 166, 304, 708, 1161, 1234, 1267 |
| BseJI | GATNNNNATC | 1 cut(s) | 249 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BseMI | GCAATG | 3 cut(s) | 18, 398, 1351 |
| BseMII | CTCAG | 6 cut(s) | 60, 672, 857, 948, 1140, 1206 |
| BseNI | ACTGG | 6 cut(s) | 136, 446, 481, 566, 1023, 1380 |
| BseXI | GCAGC | 3 cut(s) | 102, 924, 1381 |
| BsgI | GTGCAG | 1 cut(s) | 632 |
| BshFI | GGCC | 2 cut(s) | 172, 665 |
| BshNI | GGYRCC | 2 cut(s) | 622, 1073 |
| BshVI | ATCGAT | 1 cut(s) | 805 |
| BsiSI | CCGG | 3 cut(s) | 666, 934, 1202 |
| BsiWI | CGTACG | 1 cut(s) | 423 |
| BslFI | GGGAC | 2 cut(s) | 130, 197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BsmAI | GTCTC | 5 cut(s) | 330, 518, 620, 1374, 1424 |
| BsmFI | GGGAC | 2 cut(s) | 130, 197 |
| BsnI | GGCC | 2 cut(s) | 172, 665 |
| Bso31I | GGTCTC | 4 cut(s) | 330, 620, 1374, 1424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 853 |
| Bsp143I | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| BspACI | CCGC | 2 cut(s) | 521, 1397 |
| BspANI | GGCC | 2 cut(s) | 172, 665 |
| BspCNI | CTCAG | 6 cut(s) | 61, 673, 856, 949, 1141, 1207 |
| BspDI | ATCGAT | 1 cut(s) | 805 |
| BspLI | GGNNCC | 3 cut(s) | 171, 624, 1075 |
| BspOI | GCTAGC | 2 cut(s) | 407, 1322 |
| BspPI | GGATC | 5 cut(s) | 252, 453, 572, 778, 1292 |
| BspT107I | GGYRCC | 2 cut(s) | 622, 1073 |
| BspTNI | GGTCTC | 4 cut(s) | 330, 620, 1374, 1424 |
| BsrDI | GCAATG | 3 cut(s) | 18, 398, 1351 |
| BsrFI | RCCGGY | 1 cut(s) | 933 |
| BsrI | ACTGG | 6 cut(s) | 136, 446, 481, 566, 1023, 1380 |
| BssAI | RCCGGY | 1 cut(s) | 933 |
| BssECI | CCNNGG | 1 cut(s) | 459 |
| BssMI | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst2UI | CCWGG | 4 cut(s) | 41, 322, 620, 627 |
| Bst4CI | ACNGT | 5 cut(s) | 423, 727, 1298, 1355, 1406 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 236, 518, 728 |
| BstBAI | YACGTR | 1 cut(s) | 427 |
| BstC8I | GCNNGC | 3 cut(s) | 405, 935, 1320 |
| BstDEI | CTNAG | 7 cut(s) | 69, 681, 843, 957, 1149, 1215, 1461 |
| BstF5I | GGATG | 6 cut(s) | 166, 304, 708, 1161, 1234, 1267 |
| BstHHI | GCGC | 1 cut(s) | 149 |
| BstKTI | GATC | 8 cut(s) | 247, 376, 448, 567, 773, 809, 1212, 1287 |
| BstMAI | GTCTC | 5 cut(s) | 330, 518, 620, 1374, 1424 |
| BstMBI | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 128, 236, 518, 728 |
| BstNI | CCWGG | 4 cut(s) | 41, 322, 620, 627 |
| BstNSI | RCATGY | 1 cut(s) | 531 |
| BstSCI | CCNGG | 4 cut(s) | 39, 320, 618, 625 |
| BstSFI | CTRYAG | 2 cut(s) | 658, 1035 |
| BstSNI | TACGTA | 1 cut(s) | 427 |
| BstV1I | GCAGC | 3 cut(s) | 102, 924, 1381 |
| BstV2I | GAAGAC | 1 cut(s) | 471 |
| BstX2I | RGATCY | 1 cut(s) | 445 |
| BstYI | RGATCY | 1 cut(s) | 445 |
| Bsu15I | ATCGAT | 1 cut(s) | 805 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1149, 1461 |
| BsuI | GTATCC | 1 cut(s) | 1394 |
| BsuRI | GGCC | 2 cut(s) | 172, 665 |
| BsuTUI | ATCGAT | 1 cut(s) | 805 |
| BtsCI | GGATG | 6 cut(s) | 166, 304, 708, 1161, 1234, 1267 |
| BtsIMutI | CAGTG | 4 cut(s) | 439, 474, 559, 1212 |
| Cac8I | GCNNGC | 3 cut(s) | 405, 935, 1320 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1070 |
| CfoI | GCGC | 1 cut(s) | 149 |
| Cfr10I | RCCGGY | 1 cut(s) | 933 |
| Cfr13I | GGNCC | 2 cut(s) | 170, 663 |
| ClaI | ATCGAT | 1 cut(s) | 805 |
| CseI | GACGC | 1 cut(s) | 497 |
| Csp6I | GTAC | 1 cut(s) | 424 |
| CviAII | CATG | 4 cut(s) | 528, 719, 1225, 1365 |
| CviQI | GTAC | 1 cut(s) | 424 |
| DdeI | CTNAG | 7 cut(s) | 69, 681, 843, 957, 1149, 1215, 1461 |
| DpnI | GATC | 8 cut(s) | 246, 375, 447, 566, 772, 808, 1211, 1286 |
| DpnII | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| DraIII | CACNNNGTG | 1 cut(s) | 480 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1306 |
| Eco105I | TACGTA | 1 cut(s) | 427 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 1 cut(s) | 853 |
| Eco31I | GGTCTC | 4 cut(s) | 330, 620, 1374, 1424 |
| Eco32I | GATATC | 1 cut(s) | 318 |
| Eco81I | CCTNAGG | 2 cut(s) | 1149, 1461 |
| EcoO109I | RGGNCCY | 1 cut(s) | 170 |
| EcoRII | CCWGG | 4 cut(s) | 39, 320, 618, 625 |
| EcoRV | GATATC | 1 cut(s) | 318 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| EcoT38I | GRGCYC | 1 cut(s) | 853 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| FaeI | CATG | 4 cut(s) | 531, 722, 1228, 1368 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1475 |
| FaqI | GGGAC | 2 cut(s) | 130, 197 |
| FatI | CATG | 4 cut(s) | 527, 718, 1224, 1364 |
| FauI | CCCGC | 1 cut(s) | 1390 |
| FbaI | TGATCA | 2 cut(s) | 373, 1209 |
| FblI | GTMKAC | 1 cut(s) | 962 |
| Fnu4HI | GCNGC | 3 cut(s) | 91, 938, 1395 |
| FokI | GGATG | 6 cut(s) | 173, 311, 695, 1168, 1241, 1274 |
| FriOI | GRGCYC | 1 cut(s) | 853 |
| Fsp4HI | GCNGC | 3 cut(s) | 91, 938, 1395 |
| FspBI | CTAG | 2 cut(s) | 404, 1319 |
| GlaI | GCGC | 1 cut(s) | 148 |
| GluI | GCNGC | 3 cut(s) | 91, 938, 1395 |
| GsuI | CTGGAG | 1 cut(s) | 602 |
| HaeIII | GGCC | 2 cut(s) | 172, 665 |
| HapII | CCGG | 3 cut(s) | 666, 934, 1202 |
| HgaI | GACGC | 1 cut(s) | 497 |
| HhaI | GCGC | 1 cut(s) | 149 |
| Hin1II | CATG | 4 cut(s) | 531, 722, 1228, 1368 |
| Hin6I | GCGC | 1 cut(s) | 147 |
| HinP1I | GCGC | 1 cut(s) | 147 |
| HindIII | AAGCTT | 1 cut(s) | 1162 |
| HinfI | GANTC | 7 cut(s) | 65, 71, 959, 1031, 1055, 1067, 1466 |
| HpaII | CCGG | 3 cut(s) | 666, 934, 1202 |
| HphI | GGTGA | 5 cut(s) | 55, 245, 557, 565, 1216 |
| Hpy166II | GTNNAC | 2 cut(s) | 963, 1351 |
| Hpy188I | TCNGA | 9 cut(s) | 64, 70, 76, 330, 537, 846, 958, 1043, 1066 |
| Hpy188III | TCNNGA | 4 cut(s) | 878, 1410, 1450, 1483 |
| Hpy8I | GTNNAC | 2 cut(s) | 963, 1351 |
| HpyAV | CCTTC | 6 cut(s) | 137, 142, 183, 277, 1024, 1094 |
| HpyCH4III | ACNGT | 5 cut(s) | 423, 727, 1298, 1355, 1406 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 7 cut(s) | 274, 512, 598, 649, 722, 1344, 1364 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 128, 236, 518, 728 |
| HpyF3I | CTNAG | 7 cut(s) | 69, 681, 843, 957, 1149, 1215, 1461 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92II | CATG | 4 cut(s) | 531, 722, 1228, 1368 |
| HspAI | GCGC | 1 cut(s) | 147 |
| KroI | GCCGGC | 1 cut(s) | 933 |
| KroNI | GCCGGC | 1 cut(s) | 935 |
| Ksp22I | TGATCA | 2 cut(s) | 373, 1209 |
| Kzo9I | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| Lsp1109I | GCAGC | 3 cut(s) | 102, 924, 1381 |
| LweI | GCATC | 4 cut(s) | 289, 623, 791, 1252 |
| MaeI | CTAG | 2 cut(s) | 404, 1319 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MaeIII | GTNAC | 5 cut(s) | 224, 427, 545, 1025, 1298 |
| MalI | GATC | 8 cut(s) | 246, 375, 447, 566, 772, 808, 1211, 1286 |
| MboI | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| MboII | GAAGA | 5 cut(s) | 117, 440, 476, 642, 1346 |
| MfeI | CAATTG | 1 cut(s) | 774 |
| MflI | RGATCY | 1 cut(s) | 445 |
| MhlI | GDGCHC | 1 cut(s) | 853 |
| MluCI | AATT | 7 cut(s) | 394, 414, 539, 774, 1123, 1288, 1381 |
| MlyI | GAGTC | 6 cut(s) | 74, 80, 968, 1049, 1061, 1460 |
| MmeI | TCCRAC | 2 cut(s) | 54, 907 |
| MnlI | CCTC | 9 cut(s) | 8, 80, 151, 159, 443, 462, 1144, 1209, 1265 |
| MroNI | GCCGGC | 1 cut(s) | 933 |
| MseI | TTAA | 5 cut(s) | 81, 968, 999, 1166, 1493 |
| MslI | CAYNNNNRTG | 1 cut(s) | 258 |
| MspI | CCGG | 3 cut(s) | 666, 934, 1202 |
| MspR9I | CCNGG | 4 cut(s) | 41, 322, 620, 627 |
| MunI | CAATTG | 1 cut(s) | 774 |
| MvaI | CCWGG | 4 cut(s) | 41, 322, 620, 627 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 128, 236, 518, 728 |
| NaeI | GCCGGC | 1 cut(s) | 935 |
| NdeII | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| NgoMIV | GCCGGC | 1 cut(s) | 933 |
| NheI | GCTAGC | 2 cut(s) | 403, 1318 |
| NlaIII | CATG | 4 cut(s) | 531, 722, 1228, 1368 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 624, 1075 |
| NmuCI | GTSAC | 2 cut(s) | 545, 1298 |
| NspI | RCATGY | 1 cut(s) | 531 |
| PdiI | GCCGGC | 1 cut(s) | 935 |
| PfeI | GAWTC | 1 cut(s) | 1031 |
| Pfl23II | CGTACG | 1 cut(s) | 423 |
| PflFI | GACNNNGTC | 1 cut(s) | 1469 |
| PkrI | GCNGC | 3 cut(s) | 92, 939, 1396 |
| PleI | GAGTC | 6 cut(s) | 73, 79, 967, 1049, 1061, 1460 |
| PpsI | GAGTC | 6 cut(s) | 73, 79, 967, 1049, 1061, 1460 |
| Ppu21I | YACGTR | 1 cut(s) | 427 |
| PshBI | ATTAAT | 1 cut(s) | 999 |
| Psp6I | CCWGG | 4 cut(s) | 39, 320, 618, 625 |
| PspGI | CCWGG | 4 cut(s) | 39, 320, 618, 625 |
| PspLI | CGTACG | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 624, 1075 |
| PspPI | GGNCC | 2 cut(s) | 170, 663 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1070 |
| PsuI | RGATCY | 1 cut(s) | 445 |
| PsyI | GACNNNGTC | 1 cut(s) | 1469 |
| RsaI | GTAC | 1 cut(s) | 425 |
| RsaNI | GTAC | 1 cut(s) | 424 |
| RseI | CAYNNNNRTG | 1 cut(s) | 258 |
| SaqAI | TTAA | 5 cut(s) | 81, 968, 999, 1166, 1493 |
| SatI | GCNGC | 3 cut(s) | 91, 938, 1395 |
| Sau3AI | GATC | 8 cut(s) | 244, 373, 445, 564, 770, 806, 1209, 1284 |
| Sau96I | GGNCC | 2 cut(s) | 170, 663 |
| SchI | GAGTC | 6 cut(s) | 74, 80, 968, 1049, 1061, 1460 |
| ScrFI | CCNGG | 4 cut(s) | 41, 322, 620, 627 |
| SduI | GDGCHC | 1 cut(s) | 853 |
| SfaNI | GCATC | 4 cut(s) | 289, 623, 791, 1252 |
| SfcI | CTRYAG | 2 cut(s) | 658, 1035 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 258 |
| SmlI | CTYRAG | 3 cut(s) | 453, 1256, 1448 |
| SmoI | CTYRAG | 3 cut(s) | 453, 1256, 1448 |
| SnaBI | TACGTA | 1 cut(s) | 427 |
| Sse9I | AATT | 7 cut(s) | 394, 414, 539, 774, 1123, 1288, 1381 |
| SsiI | CCGC | 2 cut(s) | 521, 1397 |
| SspMI | CTAG | 2 cut(s) | 404, 1319 |
| StyD4I | CCNGG | 4 cut(s) | 39, 320, 618, 625 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaaI | ACNGT | 5 cut(s) | 423, 727, 1298, 1355, 1406 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TaqI | TCGA | 3 cut(s) | 314, 805, 1127 |
| TasI | AATT | 7 cut(s) | 394, 414, 539, 774, 1123, 1288, 1381 |
| TfiI | GAWTC | 1 cut(s) | 1031 |
| Tru1I | TTAA | 5 cut(s) | 81, 968, 999, 1166, 1493 |
| Tru9I | TTAA | 5 cut(s) | 81, 968, 999, 1166, 1493 |
| TscAI | CASTG | 4 cut(s) | 446, 481, 566, 1219 |
| TseFI | GTSAC | 2 cut(s) | 545, 1298 |
| TseI | GCWGC | 3 cut(s) | 90, 937, 1394 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 1298 |
| TspDTI | ATGAA | 7 cut(s) | 48, 156, 296, 387, 1184, 1237, 1417 |
| TspRI | CASTG | 4 cut(s) | 446, 481, 566, 1219 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1469 |
| VspI | ATTAAT | 1 cut(s) | 999 |
| XapI | RAATTY | 2 cut(s) | 539, 1123 |
| XceI | RCATGY | 1 cut(s) | 531 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 47 |
| XmiI | GTMKAC | 1 cut(s) | 962 |
| XspI | CTAG | 2 cut(s) | 404, 1319 |