Rh3DG302400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000336
Physical Location & Seq
Reverse (-)
31919513 .. 31921080
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG302400.1

Sequence Viewer

Length: 240 bp
ATGGCGGTGAACATGGCTGCCATCACTGATGAGCAAGGTGTTCCCGGAAGCTTCTCCAATCTCGGCGATCATTTGGTCGACGATGTTGAGGTGGTCAATCACTGCATCGGAGGGCATGAGATCGAGCTCCCGGATGCTACTAGTGGACCTGTAGTTCGAGGTGTTCGAAAAATCGCTGCGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGCTGGCGGAGAAGCCGTCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.15

Weight (kDa)

4.29

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 5 cut(s) 5, 179, 182, 206, 221
AhlI ACTAGT 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 51, 127
AluI AGCT 2 cut(s) 51, 127
Alw21I GWGCWC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 17, 176
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 2 cut(s) 45, 131
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 4, 163
BccI CCATC 1 cut(s) 29
BceAI ACGGC 2 cut(s) 193, 214
BcnI CCSGG 2 cut(s) 45, 131
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 3 cut(s) 18, 177, 180
BlsI GCNGC 3 cut(s) 19, 178, 181
Bme1390I CCNGG 2 cut(s) 45, 131
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 45, 131
BmsI GCATC 2 cut(s) 114, 124
Bpu14I TTCGAA 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 45, 131
BsaXI ACNNNNNCTCC 1 cut(s) 215
BseGI GGATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 4, 163
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 45, 131
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 67, 120
BspACI CCGC 5 cut(s) 5, 179, 182, 206, 221
BspLI GGNNCC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 166
BssMI GATC 2 cut(s) 67, 120
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 70, 123
BstMBI GATC 2 cut(s) 67, 120
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 43, 129
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 4, 163
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 24, 100
Cac8I GCNNGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 13, 116
CviJI RGCY 4 cut(s) 17, 51, 127, 229
CviKI_1 RGCY 4 cut(s) 17, 51, 127, 229
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 69, 122
DpnII GATC 2 cut(s) 67, 120
EciI GGCGGA 2 cut(s) 197, 236
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 2 cut(s) 16, 119
FaiI YATR 2 cut(s) 14, 117
FatI CATG 2 cut(s) 12, 115
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 18, 177, 180
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 18, 177, 180
FspBI CTAG 1 cut(s) 141
GluI GCNGC 3 cut(s) 18, 177, 180
HapII CCGG 2 cut(s) 45, 131
Hin1II CATG 2 cut(s) 16, 119
HincII GTYRAC 2 cut(s) 79, 234
HindII GTYRAC 2 cut(s) 79, 234
HindIII AAGCTT 1 cut(s) 49
HpaII CCGG 2 cut(s) 45, 131
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 10, 79, 146, 234
Hpy188I TCNGA 1 cut(s) 110
Hpy8I GTNNAC 4 cut(s) 10, 79, 146, 234
Hpy99I CGWCG 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 16, 119
Kzo9I GATC 2 cut(s) 67, 120
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 58, 144, 162, 203
Lsp1109I GCAGC 2 cut(s) 4, 163
LweI GCATC 2 cut(s) 114, 124
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 69, 122
MboI GATC 2 cut(s) 67, 120
MhlI GDGCHC 1 cut(s) 129
MnlI CCTC 5 cut(s) 82, 104, 152, 178, 181
MspI CCGG 2 cut(s) 45, 131
MspR9I CCNGG 2 cut(s) 45, 131
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 45, 131
NdeII GATC 2 cut(s) 67, 120
NlaIII CATG 2 cut(s) 16, 119
NlaIV GGNNCC 1 cut(s) 204
NmeAIII GCCGAG 1 cut(s) 42
NspV TTCGAA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfoI TCCNGGA 2 cut(s) 43, 129
PkrI GCNGC 3 cut(s) 19, 178, 181
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 77
SatI GCNGC 3 cut(s) 18, 177, 180
Sau3AI GATC 2 cut(s) 67, 120
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 45, 131
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 40, 53, 93, 129, 151, 163
SfaNI GCATC 2 cut(s) 114, 124
SfcI CTRYAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 140
SsiI CCGC 5 cut(s) 5, 179, 182, 206, 221
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 43, 129
TaqI TCGA 4 cut(s) 78, 123, 157, 166
TauI GCSGC 1 cut(s) 182
TscAI CASTG 2 cut(s) 31, 107
TseI GCWGC 2 cut(s) 17, 176
TspRI CASTG 2 cut(s) 31, 107
VpaK11BI GGWCC 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.