Rmu_sc0006050.1_g000025

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006050.1
OG0000336
Physical Location & Seq
Reverse (-)
68674 .. 70322
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006050.1_g000025.1.cds

Sequence Viewer

Length: 816 bp
atggatgttgtggatgagatggcggtgaggttggtggcctctctgggattggttgatggttggagaccggtggacttgaggccaccacgaggagagggcttgcgcaacttacaaacttacttggttggcaagcttttgacagcttgggctttcaataagcaatctttcatgaggatgttcagaaggacttggaggctcaatagtagatatacggtgcaagagcatgatgacaggttcctttttactctatctgacctgttagaccagaatagaatacttcggggatgtccttggggcttcgatcatgcgcttgttgttctggcaccatatgatggtgtcgggcaaattggagctgtactgctgaattcactggctttctgggtgaagatcaaaggcctccctccggtgttccattctgataggtatgaggctttgagggaatctattaccccgacgaggagaaatctggatcaagttatggctatggatcaggttatggctagggttgatagcaccttggcggctggctcttccttggtgttcggagctcaggtaggtggaggtgggaatgggggtctaaatcggtttatcccggccttgactctaaaggccagtgctcggagggcgcttcaacccagaccagtaggaaagggctcttacggtagcaagtcggtacctgagggtgatggtcatgaggtacggggttccgagcacccggagagtgaagtcgaggctaatgctgatggtctggaggccaacgaggatggcgagactaccaaaccttcgtctggcaaattggttgtggccatgacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

271

Amino Acids

29.73

Weight (kDa)

7.89

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 673
AccB1I GGYRCC 2 cut(s) 322, 673
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 2 cut(s) 23, 521
AclWI GGATC 2 cut(s) 477, 495
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 3 cut(s) 357, 675, 699
AfiI CCNNNNNNNGG 6 cut(s) 89, 332, 403, 456, 618, 788
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 154, 632
AluBI AGCT 4 cut(s) 133, 143, 353, 548
AluI AGCT 4 cut(s) 133, 143, 353, 548
Alw21I GWGCWC 3 cut(s) 550, 619, 714
Alw26I GTCTC 2 cut(s) 58, 764
AlwI GGATC 2 cut(s) 477, 495
AoxI GGCC 7 cut(s) 36, 80, 394, 594, 609, 753, 804
ApoI RAATTY 1 cut(s) 364
AsiGI ACCGGT 1 cut(s) 67
Asp718I GGTACC 1 cut(s) 673
AspLEI GCGC 3 cut(s) 105, 310, 628
AsuC2I CCSGG 2 cut(s) 593, 716
AsuHPI GGTGA 3 cut(s) 37, 394, 695
AxyI CCTNAGG 1 cut(s) 678
BalI TGGCCA 1 cut(s) 806
BanI GGYRCC 2 cut(s) 322, 673
BanII GRGCYC 2 cut(s) 550, 656
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 550, 619, 714
BccI CCATC 6 cut(s) 13, 50, 326, 680, 737, 758
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BcnI CCSGG 2 cut(s) 593, 716
BcoDI GTCTC 2 cut(s) 58, 764
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 629
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 593, 716
BmiI GGNNCC 4 cut(s) 236, 324, 675, 706
BmrFI CCNGG 2 cut(s) 593, 716
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 593, 716
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 290, 516, 534
BsaWI WCCGGW 2 cut(s) 67, 403
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 332, 403, 456, 618, 788
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 3 cut(s) 375, 612, 641
Bse21I CCTNAGG 1 cut(s) 678
BseDI CCNNGG 3 cut(s) 290, 516, 534
BseGI GGATG 5 cut(s) 10, 19, 180, 290, 769
BseLI CCNNNNNNNGG 6 cut(s) 89, 332, 403, 456, 618, 788
BseMII CTCAG 2 cut(s) 563, 669
BseNI ACTGG 3 cut(s) 375, 612, 641
BseRI GAGGAG 2 cut(s) 105, 472
BshFI GGCC 7 cut(s) 38, 82, 396, 596, 611, 755, 806
BshNI GGYRCC 2 cut(s) 322, 673
BshTI ACCGGT 1 cut(s) 67
BsiHKAI GWGCWC 3 cut(s) 550, 619, 714
BsiSI CCGG 4 cut(s) 68, 404, 593, 716
BslI CCNNNNNNNGG 6 cut(s) 89, 332, 403, 456, 618, 788
BsmAI GTCTC 2 cut(s) 58, 764
BsnI GGCC 7 cut(s) 38, 82, 396, 596, 611, 755, 806
Bso31I GGTCTC 1 cut(s) 58
Bsp1286I GDGCHC 4 cut(s) 550, 619, 656, 714
Bsp143I GATC 4 cut(s) 301, 387, 469, 487
BspACI CCGC 2 cut(s) 23, 521
BspANI GGCC 7 cut(s) 38, 82, 396, 596, 611, 755, 806
BspCNI CTCAG 2 cut(s) 562, 670
BspHI TCATGA 2 cut(s) 168, 691
BspLI GGNNCC 4 cut(s) 236, 324, 675, 706
BspPI GGATC 2 cut(s) 477, 495
BspQI GCTCTTC 1 cut(s) 535
BspT107I GGYRCC 2 cut(s) 322, 673
BspTNI GGTCTC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 3 cut(s) 375, 612, 641
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 290, 516, 534
BssMI GATC 4 cut(s) 301, 387, 469, 487
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 3 cut(s) 290, 516, 534
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 214, 662
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 101, 131, 526
BstDEI CTNAG 2 cut(s) 549, 678
BstF5I GGATG 5 cut(s) 10, 19, 180, 290, 769
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 3 cut(s) 105, 310, 628
BstKTI GATC 4 cut(s) 304, 390, 472, 490
BstMAI GTCTC 2 cut(s) 58, 764
BstMBI GATC 4 cut(s) 301, 387, 469, 487
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 591, 714
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 7 cut(s) 38, 82, 396, 596, 611, 755, 806
BtsCI GGATG 5 cut(s) 10, 19, 180, 290, 769
BtsIMutI CAGTG 2 cut(s) 368, 619
Cac8I GCNNGC 3 cut(s) 101, 131, 526
CciI TCATGA 2 cut(s) 168, 691
CfoI GCGC 3 cut(s) 105, 310, 628
Cfr10I RCCGGY 1 cut(s) 67
Csp6I GTAC 3 cut(s) 356, 674, 698
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 5 cut(s) 169, 224, 305, 692, 808
CviQI GTAC 3 cut(s) 356, 674, 698
DdeI CTNAG 2 cut(s) 549, 678
DpnI GATC 4 cut(s) 303, 389, 471, 489
DpnII GATC 4 cut(s) 301, 387, 469, 487
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 3 cut(s) 290, 516, 534
Eco147I AGGCCT 1 cut(s) 396
Eco24I GRGCYC 2 cut(s) 550, 656
Eco31I GGTCTC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 364
EcoT14I CCWWGG 3 cut(s) 290, 516, 534
EcoT38I GRGCYC 2 cut(s) 550, 656
ErhI CCWWGG 3 cut(s) 290, 516, 534
FaeI CATG 5 cut(s) 172, 227, 308, 695, 811
FatI CATG 5 cut(s) 168, 223, 304, 691, 807
FauNDI CATATG 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 5 cut(s) 17, 26, 187, 297, 776
FriOI GRGCYC 2 cut(s) 550, 656
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 3 cut(s) 104, 309, 627
GluI GCNGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 7 cut(s) 38, 82, 396, 596, 611, 755, 806
HapII CCGG 4 cut(s) 68, 404, 593, 716
HhaI GCGC 3 cut(s) 105, 310, 628
Hin1II CATG 5 cut(s) 172, 227, 308, 695, 811
Hin6I GCGC 3 cut(s) 103, 308, 626
HinP1I GCGC 3 cut(s) 103, 308, 626
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 440, 601
HpaII CCGG 4 cut(s) 68, 404, 593, 716
HphI GGTGA 3 cut(s) 37, 394, 695
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 6 cut(s) 182, 253, 418, 545, 621, 709
Hpy188III TCNNGA 4 cut(s) 169, 467, 692, 749
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 177, 792
HpyCH4III ACNGT 2 cut(s) 214, 662
HpyCH4IV ACGT 1 cut(s) 812
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 2 cut(s) 549, 678
HpySE526I ACGT 1 cut(s) 812
Hsp92II CATG 5 cut(s) 172, 227, 308, 695, 811
HspAI GCGC 3 cut(s) 103, 308, 626
KpnI GGTACC 1 cut(s) 677
Kzo9I GATC 4 cut(s) 301, 387, 469, 487
LguI GCTCTTC 1 cut(s) 535
LmnI GCTCC 2 cut(s) 350, 545
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 812
MalI GATC 4 cut(s) 303, 389, 471, 489
MboI GATC 4 cut(s) 301, 387, 469, 487
MboII GAAGA 2 cut(s) 397, 522
MhlI GDGCHC 4 cut(s) 550, 619, 656, 714
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 3 cut(s) 345, 364, 794
MluNI TGGCCA 1 cut(s) 806
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 41
Mox20I TGGCCA 1 cut(s) 806
MscI TGGCCA 1 cut(s) 806
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 806
MspI CCGG 4 cut(s) 68, 404, 593, 716
MspR9I CCNGG 2 cut(s) 593, 716
MwoI GCNNNNNNNGC 1 cut(s) 623
NciI CCSGG 2 cut(s) 593, 716
NdeI CATATG 1 cut(s) 328
NdeII GATC 4 cut(s) 301, 387, 469, 487
NlaIII CATG 5 cut(s) 172, 227, 308, 695, 811
NlaIV GGNNCC 4 cut(s) 236, 324, 675, 706
NsbI TGCGCA 1 cut(s) 104
PagI TCATGA 2 cut(s) 168, 691
PceI AGGCCT 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 765
PfeI GAWTC 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 550
PspN4I GGNNCC 4 cut(s) 236, 324, 675, 706
RsaI GTAC 3 cut(s) 357, 675, 699
RsaNI GTAC 3 cut(s) 356, 674, 698
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 550
SapI GCTCTTC 1 cut(s) 535
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 4 cut(s) 301, 387, 469, 487
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 593, 716
SduI GDGCHC 4 cut(s) 550, 619, 656, 714
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 345, 364, 794
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 2 cut(s) 23, 521
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 550
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 591, 714
StyI CCWWGG 3 cut(s) 290, 516, 534
TaaI ACNGT 2 cut(s) 214, 662
TaiI ACGT 1 cut(s) 815
TaqI TCGA 2 cut(s) 300, 729
TasI AATT 3 cut(s) 345, 364, 794
TatI WGTACW 1 cut(s) 355
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 1 cut(s) 440
TscAI CASTG 2 cut(s) 375, 619
TspDTI ATGAA 1 cut(s) 157
TspRI CASTG 2 cut(s) 375, 619
Van91I CCANNNNNTGG 1 cut(s) 332
XapI RAATTY 1 cut(s) 364
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.