Rroxscaffold_3G00237080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000336
Physical Location & Seq
Reverse (-)
24583226 .. 24588059
4834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237080.1

Sequence Viewer

Length: 258 bp
ATGAATCCGATGGGGTTCATTCGTTCATTAAACTTGGCCTCGCGACAAGTCAAGGCCAGCCCCACTTCTTCTAGAGATGCTCGGAATCGCGCTCAAGCACTATTGACGATGGTTTCAATTGGGCGGGACAACTTTTCGGTTTTAGTCCTCTATTCCATCTCCGTGGCACGGTCGTTGTTTACGGACGTGCGGTTTGCGGTGCCTAGGAAGGACAAGAGGTCCGTGGTCATCGGGGATGCCGTTCTAGGGCTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.31

Weight (kDa)

11.65

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AccII CGCG 2 cut(s) 43, 90
AciI CCGC 3 cut(s) 124, 190, 197
AfiI CCNNNNNNNGG 2 cut(s) 168, 246
AgsI TTSAA 1 cut(s) 117
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 187
AoxI GGCC 2 cut(s) 36, 54
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspA2I CCTAGG 1 cut(s) 203
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 219
AvaII GGWCC 1 cut(s) 219
AvrII CCTAGG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 199
BccI CCATC 3 cut(s) 4, 103, 164
BceAI ACGGC 1 cut(s) 224
BfaI CTAG 3 cut(s) 72, 204, 245
BlnI CCTAGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 219
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 2 cut(s) 67, 226
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 162, 203, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 246
BseDI CCNNGG 3 cut(s) 162, 203, 222
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 168, 246
Bsh1236I CGCG 2 cut(s) 43, 90
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 2 cut(s) 38, 56
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 168, 246
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 38, 56
Bsp68I TCGCGA 1 cut(s) 43
BspACI CCGC 3 cut(s) 124, 190, 197
BspANI GGCC 2 cut(s) 38, 56
BspFNI CGCG 2 cut(s) 43, 90
BspLI GGNNCC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 162, 203, 222
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 58
BstDSI CCRYGG 2 cut(s) 162, 222
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 43, 90
BstHHI GCGC 1 cut(s) 92
BstMCI CGRYCG 1 cut(s) 173
BstUI CGCG 2 cut(s) 43, 90
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuRI GGCC 2 cut(s) 38, 56
BtgI CCRYGG 2 cut(s) 162, 222
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 241
BtuMI TCGCGA 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 219
CviJI RGCY 4 cut(s) 38, 56, 60, 250
CviKI_1 RGCY 4 cut(s) 38, 56, 60, 250
DriI GACNNNNNGTC 1 cut(s) 217
Eam1105I GACNNNNNGTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaqI GGGAC 1 cut(s) 140
FauI CCCGC 1 cut(s) 117
FokI GGATG 1 cut(s) 248
FspBI CTAG 3 cut(s) 72, 204, 245
GlaI GCGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 38, 56
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 4, 85
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 9, 84
Hpy188III TCNNGA 2 cut(s) 42, 72
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 186
HspAI GCGC 1 cut(s) 90
LpnPI CCDG 1 cut(s) 70
LweI GCATC 2 cut(s) 67, 226
MaeI CTAG 3 cut(s) 72, 204, 245
MaeII ACGT 1 cut(s) 186
MboII GAAGA 1 cut(s) 60
MfeI CAATTG 1 cut(s) 117
MluCI AATT 1 cut(s) 117
MnlI CCTC 3 cut(s) 49, 158, 210
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 161
MunI CAATTG 1 cut(s) 117
MvnI CGCG 2 cut(s) 43, 90
NlaIV GGNNCC 1 cut(s) 201
NruI TCGCGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 2 cut(s) 4, 85
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 219
RruI TCGCGA 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 219
SetI ASST 2 cut(s) 189, 221
SfaNI GCATC 2 cut(s) 67, 226
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 117
SsiI CCGC 3 cut(s) 124, 190, 197
SspMI CTAG 3 cut(s) 72, 204, 245
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 117
TfiI GAWTC 2 cut(s) 4, 85
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 7, 15, 17
TspGWI ACGGA 4 cut(s) 151, 197, 211, 243
VpaK11BI GGWCC 1 cut(s) 219
XbaI TCTAGA 1 cut(s) 71
XmaJI CCTAGG 1 cut(s) 203
XspI CTAG 3 cut(s) 72, 204, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.