Rmu_sc0001822.1_g000033

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001822.1
OG0000336
Physical Location & Seq
Reverse (-)
126905 .. 128095
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001822.1_g000033.1.cds

Sequence Viewer

Length: 534 bp
atgggcatgtttaggagagcttggaggctgaatgggcgctatactatccaagcacatgatgatagattcttgtttactttctcggatcattctgatcgaaatcgaattctctggggagcactgagggggtttgatcgtgctcctatggtgttggctccatttgacggagcaggagctataaaagatgttaatttgaattctttggcattctggatcgaagacaggggcctccctctggatttccacactgatcaatgcctcagaagtataggttgtgctttgggacagttcctacagaaagataccactgaatttgatgctggacgtattcaaattatgacgggaattcagattcgaaccttggcggtgatgccgacacagaatgttcaagacctagcgctggagtcgactgcaaaccaggaagaacgggtgctcggggacactactatggttgatcatgttggtaccagtgaggaagccgaccttgcaaaccatgcaaatcatgctttagtactagttccatcacctaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

177

Amino Acids

19.81

Weight (kDa)

5.24

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 464
AccI GTMKAC 1 cut(s) 407
AciI CCGC 1 cut(s) 365
AclWI GGATC 2 cut(s) 93, 221
AcsI RAATTY 4 cut(s) 105, 196, 311, 345
AfaI GTAC 2 cut(s) 466, 513
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 164, 235, 400
AgsI TTSAA 3 cut(s) 196, 332, 389
AhlI ACTAGT 1 cut(s) 514
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 2 cut(s) 20, 176
AluI AGCT 2 cut(s) 20, 176
Alw21I GWGCWC 3 cut(s) 121, 142, 435
AlwI GGATC 2 cut(s) 93, 221
Ama87I CYCGRG 1 cut(s) 434
Aor51HI AGCGCT 1 cut(s) 399
AoxI GGCC 1 cut(s) 226
ApoI RAATTY 4 cut(s) 105, 196, 311, 345
Asp718I GGTACC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 39, 400
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 379, 516
AsuII TTCGAA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 434
BanI GGYRCC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 3 cut(s) 121, 142, 435
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 2 cut(s) 250, 454
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 2 cut(s) 395, 515
BfmI CTRYAG 1 cut(s) 293
BfoI RGCGCY 2 cut(s) 40, 401
BmcAI AGTACT 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 156, 227, 466
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 307, 360
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 235, 400
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 360
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 164, 235, 400
BseMII CTCAG 2 cut(s) 113, 274
BseNI ACTGG 1 cut(s) 468
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 3 cut(s) 121, 142, 435
BsiHKCI CYCGRG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 297, 452
BslI CCNNNNNNNGG 3 cut(s) 164, 235, 400
BsmFI GGGAC 2 cut(s) 297, 452
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 434
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 121, 142, 435
Bsp143I GATC 6 cut(s) 85, 94, 133, 213, 250, 454
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 114, 273
BspLI GGNNCC 3 cut(s) 156, 227, 466
BspPI GGATC 2 cut(s) 93, 221
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 6 cut(s) 85, 94, 133, 213, 250, 454
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 288
BstAPI GCANNNNNTGC 2 cut(s) 494, 503
BstBI TTCGAA 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 122, 260
BstH2I RGCGCY 2 cut(s) 40, 401
BstHHI GCGC 2 cut(s) 39, 400
BstKTI GATC 6 cut(s) 88, 97, 136, 216, 253, 457
BstMBI GATC 6 cut(s) 85, 94, 133, 213, 250, 454
BstMWI GCNNNNNNNGC 4 cut(s) 34, 485, 494, 503
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 228
BtsIMutI CAGTG 4 cut(s) 119, 246, 306, 475
CfoI GCGC 2 cut(s) 39, 400
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 465, 512
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 5 cut(s) 7, 56, 458, 494, 503
CviJI RGCY 6 cut(s) 20, 28, 155, 176, 228, 479
CviKI_1 RGCY 6 cut(s) 20, 28, 155, 176, 228, 479
CviQI GTAC 2 cut(s) 465, 512
DdeI CTNAG 2 cut(s) 122, 260
DpnI GATC 6 cut(s) 87, 96, 135, 215, 252, 456
DpnII GATC 6 cut(s) 85, 94, 133, 213, 250, 454
Eco130I CCWWGG 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 3 cut(s) 105, 196, 345
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 5 cut(s) 10, 59, 461, 497, 506
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 297, 452
FatI CATG 5 cut(s) 6, 55, 457, 493, 502
FbaI TGATCA 2 cut(s) 250, 454
FblI GTMKAC 1 cut(s) 407
FspBI CTAG 2 cut(s) 395, 515
GlaI GCGC 2 cut(s) 38, 399
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 2 cut(s) 40, 401
HaeIII GGCC 1 cut(s) 228
HhaI GCGC 2 cut(s) 39, 400
Hin1II CATG 5 cut(s) 10, 59, 461, 497, 506
Hin6I GCGC 2 cut(s) 37, 398
HinP1I GCGC 2 cut(s) 37, 398
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 3 cut(s) 66, 352, 404
HphI GGTGA 2 cut(s) 379, 516
Hpy166II GTNNAC 2 cut(s) 75, 408
Hpy188I TCNGA 4 cut(s) 85, 94, 263, 351
Hpy188III TCNNGA 3 cut(s) 211, 236, 389
Hpy8I GTNNAC 2 cut(s) 75, 408
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 413, 488, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 485, 494, 503
HpyF3I CTNAG 2 cut(s) 122, 260
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 5 cut(s) 10, 59, 461, 497, 506
HspAI GCGC 2 cut(s) 37, 398
KpnI GGTACC 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 250, 454
Kzo9I GATC 6 cut(s) 85, 94, 133, 213, 250, 454
LmnI GCTCC 5 cut(s) 116, 145, 160, 167, 173
LweI GCATC 2 cut(s) 307, 360
MaeI CTAG 2 cut(s) 395, 515
MaeII ACGT 1 cut(s) 325
MalI GATC 6 cut(s) 87, 96, 135, 215, 252, 456
MboI GATC 6 cut(s) 85, 94, 133, 213, 250, 454
MboII GAAGA 2 cut(s) 230, 434
MhlI GDGCHC 3 cut(s) 121, 142, 435
MluCI AATT 7 cut(s) 105, 190, 196, 311, 333, 345, 529
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 6 cut(s) 18, 117, 239, 243, 269, 466
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 34, 485, 494, 503
NdeII GATC 6 cut(s) 85, 94, 133, 213, 250, 454
NlaIII CATG 5 cut(s) 10, 59, 461, 497, 506
NlaIV GGNNCC 3 cut(s) 156, 227, 466
NspI RCATGY 1 cut(s) 10
NspV TTCGAA 1 cut(s) 355
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 66, 352
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 3 cut(s) 156, 227, 466
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 2 cut(s) 466, 513
RsaNI GTAC 2 cut(s) 465, 512
RseI CAYNNNNRTG 1 cut(s) 446
SalI GTCGAC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 6 cut(s) 85, 94, 133, 213, 250, 454
Sau96I GGNCC 1 cut(s) 226
ScaI AGTACT 1 cut(s) 513
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 3 cut(s) 121, 142, 435
SetI ASST 8 cut(s) 22, 178, 274, 328, 362, 396, 486, 529
SfaNI GCATC 2 cut(s) 307, 360
SfcI CTRYAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 446
SpeI ACTAGT 1 cut(s) 514
Sse9I AATT 7 cut(s) 105, 190, 196, 311, 333, 345, 529
SsiI CCGC 1 cut(s) 365
SspMI CTAG 2 cut(s) 395, 515
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 328
TaqI TCGA 5 cut(s) 97, 103, 216, 355, 407
TasI AATT 7 cut(s) 105, 190, 196, 311, 333, 345, 529
TatI WGTACW 1 cut(s) 511
TfiI GAWTC 2 cut(s) 66, 352
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 4 cut(s) 126, 253, 313, 475
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 4 cut(s) 126, 253, 313, 475
XapI RAATTY 4 cut(s) 105, 196, 311, 345
XceI RCATGY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 407
XspI CTAG 2 cut(s) 395, 515
ZrmI AGTACT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.