Rorug01G0479600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
56817763 .. 56820264
2502 bp
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UTR
Exon/CDS
Intron
Rorug01G0479600.1

Sequence Viewer

Length: 399 bp
ATGAGTTGGATGCTGACCGATTGGAACAGTTTGTGTTCATTCGGTGGATTTGATCTTGTAGTTGGTGGGATCCCCTGCAATAATCCAACAGCCAGTATTCACAAAGTTTATTTGCGGATTGTAGTTGTCGGATATCATAGAACAAGACTCCGTGCAGATGCAGTAAAACTCCATTGTGCAGATGACTCTCAAAATTGCCATTATTCCTCAAGGTACTTGCAAAGTGCTTCATACGAATCAATGGACTTCATTGATATCTTCTTTCCCTCTTTATTTTTTGGGGTGTGTCTGTGTCTGTCCAAAGACATCACCATGTATTGCTTAAATGATTCATTTCACAAATGGAGTAATTTTTCATTTGGAGCTAGTGGAGTTTTTCTCTTGGTAAATAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

6.93

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 2 cut(s) 64, 77
AfaI GTAC 1 cut(s) 215
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
AlwI GGATC 2 cut(s) 64, 77
AsuHPI GGTGA 1 cut(s) 301
BamHI GGATCC 1 cut(s) 69
BfaI CTAG 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpuEI CTTGAG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 93
BsgI GTGCAG 2 cut(s) 174, 198
Bsp143I GATC 2 cut(s) 52, 69
BspACI CCGC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 64, 77
BsrI ACTGG 1 cut(s) 93
BssMI GATC 2 cut(s) 52, 69
Bst4CI ACNGT 1 cut(s) 29
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 55, 72
BstMBI GATC 2 cut(s) 52, 69
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtsCI GGATG 1 cut(s) 15
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 313
CviJI RGCY 2 cut(s) 92, 365
CviKI_1 RGCY 2 cut(s) 92, 365
CviQI GTAC 1 cut(s) 214
DpnI GATC 2 cut(s) 54, 71
DpnII GATC 2 cut(s) 52, 69
Eco32I GATATC 2 cut(s) 134, 256
EcoRV GATATC 2 cut(s) 134, 256
FaeI CATG 1 cut(s) 316
FaiI YATR 3 cut(s) 138, 232, 314
FatI CATG 1 cut(s) 312
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 366
Hin1II CATG 1 cut(s) 316
HinfI GANTC 4 cut(s) 147, 185, 236, 329
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 5 cut(s) 78, 155, 161, 179, 220
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 2 cut(s) 52, 69
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 2 cut(s) 88, 106
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 366
MalI GATC 2 cut(s) 54, 71
MboI GATC 2 cut(s) 52, 69
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 69
MluCI AATT 3 cut(s) 193, 349, 392
MlyI GAGTC 2 cut(s) 141, 179
MmeI TCCRAC 2 cut(s) 109, 110
MnlI CCTC 2 cut(s) 217, 277
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 311
NdeII GATC 2 cut(s) 52, 69
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 236, 329
PleI GAGTC 2 cut(s) 141, 179
PpsI GAGTC 2 cut(s) 141, 179
PspN4I GGNNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 2 cut(s) 52, 69
SchI GAGTC 2 cut(s) 141, 179
SetI ASST 2 cut(s) 215, 367
SfaNI GCATC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 193, 349, 392
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 29
TaqII GACCGA 1 cut(s) 32
TasI AATT 3 cut(s) 193, 349, 392
TfiI GAWTC 2 cut(s) 236, 329
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TspDTI ATGAA 5 cut(s) 27, 219, 238, 321, 345
TspGWI ACGGA 1 cut(s) 140
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.