RchiOBHm_Chr4g0387411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000336
Physical Location & Seq
Reverse (-)
2620779 .. 2621218
440 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36073

Sequence Viewer

Length: 168 bp
ATGGATTTGGGGAATCAGATTATAACGAATCCGATTGGGTTCTTTCGTTCATTGAACTTGGCTTGTGACAAGTCAAGGCCAGCCACCACATCTTCCGGAGACGCTAGGAATCGCGCTCAAGCACCATCGTCGCCGTCGGCTAATCAGCACTCTTTGGGTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

5.83

Weight (kDa)

9.49

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 95
AgsI TTSAA 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 116
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 95
BseAI TCCGGA 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 95
BspANI GGCC 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 95
BspFNI CGCG 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 81
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 93
BstUI CGCG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 116
CseI GACGC 1 cut(s) 110
CviJI RGCY 4 cut(s) 62, 79, 83, 140
CviKI_1 RGCY 4 cut(s) 62, 79, 83, 140
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 1 cut(s) 23
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 116
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 3 cut(s) 13, 28, 109
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 18, 33
Hpy188III TCNNGA 1 cut(s) 96
Hpy99I CGWCG 2 cut(s) 133, 139
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 95
LpnPI CCDG 2 cut(s) 93, 109
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 1 cut(s) 84
MroI TCCGGA 1 cut(s) 95
MspI CCGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 13, 28, 109
PsiI TTATAA 1 cut(s) 23
SgeI CNNG 9 cut(s) 70, 75, 82, 87, 92, 108, 117, 125, 131
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SspMI CTAG 1 cut(s) 105
TfiI GAWTC 3 cut(s) 13, 28, 109
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 39
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.