ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 906 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1237 |
| AccI | GTMKAC | 1 cut(s) | 866 |
| AccIII | TCCGGA | 1 cut(s) | 604 |
| AciI | CCGC | 2 cut(s) | 33, 1003 |
| AclWI | GGATC | 2 cut(s) | 958, 971 |
| AcsI | RAATTY | 1 cut(s) | 1049 |
| AcuI | CTGAAG | 2 cut(s) | 1040, 1164 |
| AfeI | AGCGCT | 1 cut(s) | 186 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 761, 1125, 1126, 1237 |
| AflIII | ACRYGT | 1 cut(s) | 1027 |
| AgsI | TTSAA | 8 cut(s) | 73, 95, 168, 310, 1078, 1253, 1305, 1333 |
| AjnI | CCWGG | 2 cut(s) | 958, 1281 |
| Alw21I | GWGCWC | 2 cut(s) | 352, 1215 |
| AlwI | GGATC | 2 cut(s) | 958, 971 |
| Ama87I | CYCGRG | 2 cut(s) | 390, 1289 |
| Aor13HI | TCCGGA | 1 cut(s) | 604 |
| Aor51HI | AGCGCT | 1 cut(s) | 186 |
| AoxI | GGCC | 1 cut(s) | 741 |
| ApoI | RAATTY | 1 cut(s) | 1049 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1053 |
| AspLEI | GCGC | 3 cut(s) | 187, 564, 726 |
| AspS9I | GGNCC | 3 cut(s) | 412, 741, 1279 |
| AsuC2I | CCSGG | 1 cut(s) | 123 |
| AvaI | CYCGRG | 2 cut(s) | 390, 1289 |
| AvaII | GGWCC | 2 cut(s) | 412, 1279 |
| BamHI | GGATCC | 1 cut(s) | 963 |
| BanI | GGYRCC | 1 cut(s) | 906 |
| BanII | GRGCYC | 3 cut(s) | 272, 352, 1215 |
| Bbv12I | GWGCWC | 2 cut(s) | 352, 1215 |
| BccI | CCATC | 4 cut(s) | 529, 920, 1116, 1288 |
| BciT130I | CCWGG | 2 cut(s) | 960, 1283 |
| BciVI | GTATCC | 2 cut(s) | 601, 1123 |
| BclI | TGATCA | 1 cut(s) | 871 |
| BcnI | CCSGG | 1 cut(s) | 123 |
| BfaI | CTAG | 4 cut(s) | 141, 372, 788, 1023 |
| BfoI | RGCGCY | 2 cut(s) | 188, 565 |
| BfuI | GTATCC | 2 cut(s) | 601, 1123 |
| BlpI | GCTNAGC | 1 cut(s) | 954 |
| Bme1390I | CCNGG | 3 cut(s) | 123, 960, 1283 |
| Bme18I | GGWCC | 2 cut(s) | 412, 1279 |
| BmeT110I | CYCGRG | 2 cut(s) | 390, 1289 |
| BmgT120I | GGNCC | 3 cut(s) | 412, 741, 1279 |
| BmiI | GGNNCC | 2 cut(s) | 908, 965 |
| BmrFI | CCNGG | 3 cut(s) | 123, 960, 1283 |
| BmsI | GCATC | 4 cut(s) | 52, 208, 735, 1141 |
| BoxI | GACNNNNGTC | 1 cut(s) | 428 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 32, 64 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 954 |
| BpuEI | CTTGAG | 2 cut(s) | 587, 1199 |
| BpuMI | CCSGG | 1 cut(s) | 123 |
| BsaAI | YACGTR | 1 cut(s) | 1094 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1134 |
| BsaJI | CCNNGG | 3 cut(s) | 122, 717, 959 |
| BsaWI | WCCGGW | 2 cut(s) | 604, 1068 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 761, 1125, 1126, 1237 |
| Bse118I | RCCGGY | 1 cut(s) | 1358 |
| Bse1I | ACTGG | 2 cut(s) | 1185, 1277 |
| Bse3DI | GCAATG | 1 cut(s) | 1154 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1134 |
| BseAI | TCCGGA | 1 cut(s) | 604 |
| BseBI | CCWGG | 2 cut(s) | 960, 1283 |
| BseDI | CCNNGG | 3 cut(s) | 122, 717, 959 |
| BseGI | GGATG | 2 cut(s) | 726, 751 |
| BseJI | GATNNNNATC | 1 cut(s) | 1134 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 761, 1125, 1126, 1237 |
| BseMI | GCAATG | 1 cut(s) | 1154 |
| BseMII | CTCAG | 5 cut(s) | 97, 365, 602, 603, 968 |
| BseNI | ACTGG | 2 cut(s) | 1185, 1277 |
| BseRI | GAGGAG | 3 cut(s) | 214, 1049, 1223 |
| BshFI | GGCC | 1 cut(s) | 743 |
| BshNI | GGYRCC | 1 cut(s) | 906 |
| BsiHKAI | GWGCWC | 2 cut(s) | 352, 1215 |
| BsiHKCI | CYCGRG | 2 cut(s) | 390, 1289 |
| BsiSI | CCGG | 4 cut(s) | 122, 605, 1069, 1359 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 761, 1125, 1126, 1237 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsnI | GGCC | 1 cut(s) | 743 |
| BsoBI | CYCGRG | 2 cut(s) | 390, 1289 |
| Bsp1286I | GDGCHC | 3 cut(s) | 272, 352, 1215 |
| Bsp13I | TCCGGA | 1 cut(s) | 604 |
| Bsp143I | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 954 |
| BspACI | CCGC | 2 cut(s) | 33, 1003 |
| BspANI | GGCC | 1 cut(s) | 743 |
| BspCNI | CTCAG | 5 cut(s) | 96, 364, 601, 604, 967 |
| BspEI | TCCGGA | 1 cut(s) | 604 |
| BspLI | GGNNCC | 2 cut(s) | 908, 965 |
| BspPI | GGATC | 2 cut(s) | 958, 971 |
| BspQI | GCTCTTC | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 1 cut(s) | 906 |
| BsrDI | GCAATG | 1 cut(s) | 1154 |
| BsrFI | RCCGGY | 1 cut(s) | 1358 |
| BsrI | ACTGG | 2 cut(s) | 1185, 1277 |
| BssAI | RCCGGY | 1 cut(s) | 1358 |
| BssECI | CCNNGG | 3 cut(s) | 122, 717, 959 |
| BssMI | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| BssT1I | CCWWGG | 1 cut(s) | 717 |
| Bst2UI | CCWGG | 2 cut(s) | 960, 1283 |
| Bst4CI | ACNGT | 6 cut(s) | 430, 581, 673, 833, 1082, 1325 |
| Bst6I | CTCTTC | 1 cut(s) | 33 |
| BstBAI | YACGTR | 1 cut(s) | 1094 |
| BstDEI | CTNAG | 7 cut(s) | 83, 243, 351, 551, 588, 612, 954 |
| BstF5I | GGATG | 2 cut(s) | 726, 751 |
| BstH2I | RGCGCY | 2 cut(s) | 188, 565 |
| BstHHI | GCGC | 3 cut(s) | 187, 564, 726 |
| BstKTI | GATC | 6 cut(s) | 149, 163, 787, 862, 874, 966 |
| BstMBI | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 24, 906, 1219 |
| BstNI | CCWGG | 2 cut(s) | 960, 1283 |
| BstNSI | RCATGY | 2 cut(s) | 640, 1031 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 428 |
| BstSCI | CCNGG | 3 cut(s) | 121, 958, 1281 |
| BstX2I | RGATCY | 1 cut(s) | 963 |
| BstYI | RGATCY | 1 cut(s) | 963 |
| BsuI | GTATCC | 2 cut(s) | 601, 1123 |
| BsuRI | GGCC | 1 cut(s) | 743 |
| BtsCI | GGATG | 2 cut(s) | 726, 751 |
| BtsIMutI | CAGTG | 1 cut(s) | 586 |
| CfoI | GCGC | 3 cut(s) | 187, 564, 726 |
| Cfr10I | RCCGGY | 1 cut(s) | 1358 |
| Cfr13I | GGNCC | 3 cut(s) | 412, 741, 1279 |
| CviAII | CATG | 6 cut(s) | 449, 637, 738, 1028, 1243, 1315 |
| DdeI | CTNAG | 7 cut(s) | 83, 243, 351, 551, 588, 612, 954 |
| DpnI | GATC | 6 cut(s) | 148, 162, 786, 861, 873, 965 |
| DpnII | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| Eam1104I | CTCTTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 1 cut(s) | 33 |
| EciI | GGCGGA | 2 cut(s) | 48, 1018 |
| Ecl136II | GAGCTC | 2 cut(s) | 350, 1213 |
| Eco130I | CCWWGG | 1 cut(s) | 717 |
| Eco24I | GRGCYC | 3 cut(s) | 272, 352, 1215 |
| Eco47I | GGWCC | 2 cut(s) | 412, 1279 |
| Eco47III | AGCGCT | 1 cut(s) | 186 |
| Eco53kI | GAGCTC | 2 cut(s) | 350, 1213 |
| Eco57I | CTGAAG | 2 cut(s) | 1040, 1164 |
| Eco88I | CYCGRG | 2 cut(s) | 390, 1289 |
| EcoICRI | GAGCTC | 2 cut(s) | 350, 1213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 412 |
| EcoRII | CCWGG | 2 cut(s) | 958, 1281 |
| EcoT14I | CCWWGG | 1 cut(s) | 717 |
| EcoT22I | ATGCAT | 1 cut(s) | 1156 |
| EcoT38I | GRGCYC | 3 cut(s) | 272, 352, 1215 |
| ErhI | CCWWGG | 1 cut(s) | 717 |
| FaeI | CATG | 6 cut(s) | 452, 640, 741, 1031, 1246, 1318 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 6 cut(s) | 448, 636, 737, 1027, 1242, 1314 |
| FbaI | TGATCA | 1 cut(s) | 871 |
| FblI | GTMKAC | 1 cut(s) | 866 |
| FokI | GGATG | 2 cut(s) | 713, 738 |
| FriOI | GRGCYC | 3 cut(s) | 272, 352, 1215 |
| FspBI | CTAG | 4 cut(s) | 141, 372, 788, 1023 |
| GlaI | GCGC | 3 cut(s) | 186, 563, 725 |
| HaeII | RGCGCY | 2 cut(s) | 188, 565 |
| HaeIII | GGCC | 1 cut(s) | 743 |
| HapII | CCGG | 4 cut(s) | 122, 605, 1069, 1359 |
| HhaI | GCGC | 3 cut(s) | 187, 564, 726 |
| Hin1II | CATG | 6 cut(s) | 452, 640, 741, 1031, 1246, 1318 |
| Hin6I | GCGC | 3 cut(s) | 185, 562, 724 |
| HinP1I | GCGC | 3 cut(s) | 185, 562, 724 |
| HindIII | AAGCTT | 1 cut(s) | 1220 |
| HinfI | GANTC | 4 cut(s) | 62, 69, 383, 1099 |
| HpaII | CCGG | 4 cut(s) | 122, 605, 1069, 1359 |
| Hpy166II | GTNNAC | 2 cut(s) | 405, 867 |
| Hpy188I | TCNGA | 9 cut(s) | 86, 151, 354, 532, 622, 648, 820, 859, 1207 |
| Hpy188III | TCNNGA | 9 cut(s) | 66, 575, 605, 709, 967, 1023, 1216, 1291, 1305 |
| Hpy8I | GTNNAC | 2 cut(s) | 405, 867 |
| HpyAV | CCTTC | 4 cut(s) | 531, 549, 1114, 1139 |
| HpyCH4III | ACNGT | 6 cut(s) | 430, 581, 673, 833, 1082, 1325 |
| HpyCH4IV | ACGT | 2 cut(s) | 1093, 1199 |
| HpyCH4V | TGCA | 5 cut(s) | 448, 518, 758, 934, 1154 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 24, 906, 1219 |
| HpyF3I | CTNAG | 7 cut(s) | 83, 243, 351, 551, 588, 612, 954 |
| HpySE526I | ACGT | 2 cut(s) | 1093, 1199 |
| Hsp92II | CATG | 6 cut(s) | 452, 640, 741, 1031, 1246, 1318 |
| HspAI | GCGC | 3 cut(s) | 185, 562, 724 |
| Kpn2I | TCCGGA | 1 cut(s) | 604 |
| Ksp22I | TGATCA | 1 cut(s) | 871 |
| Kzo9I | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| LguI | GCTCTTC | 1 cut(s) | 33 |
| LmnI | GCTCC | 5 cut(s) | 201, 347, 721, 1036, 1210 |
| LweI | GCATC | 4 cut(s) | 52, 208, 735, 1141 |
| MaeI | CTAG | 4 cut(s) | 141, 372, 788, 1023 |
| MaeII | ACGT | 2 cut(s) | 1093, 1199 |
| MaeIII | GTNAC | 2 cut(s) | 132, 790 |
| MalI | GATC | 6 cut(s) | 148, 162, 786, 861, 873, 965 |
| MboI | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| MboII | GAAGA | 3 cut(s) | 50, 1046, 1241 |
| MflI | RGATCY | 1 cut(s) | 963 |
| MhlI | GDGCHC | 3 cut(s) | 272, 352, 1215 |
| MluCI | AATT | 5 cut(s) | 190, 526, 992, 1049, 1235 |
| MnlI | CCTC | 9 cut(s) | 92, 192, 247, 331, 492, 535, 963, 1027, 1201 |
| Mph1103I | ATGCAT | 1 cut(s) | 1156 |
| MroI | TCCGGA | 1 cut(s) | 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1053 |
| MseI | TTAA | 4 cut(s) | 981, 986, 1088, 1196 |
| MspI | CCGG | 4 cut(s) | 122, 605, 1069, 1359 |
| MspR9I | CCNGG | 3 cut(s) | 123, 960, 1283 |
| MvaI | CCWGG | 2 cut(s) | 960, 1283 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 24, 906, 1219 |
| NciI | CCSGG | 1 cut(s) | 123 |
| NdeII | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| NlaIII | CATG | 6 cut(s) | 452, 640, 741, 1031, 1246, 1318 |
| NlaIV | GGNNCC | 2 cut(s) | 908, 965 |
| NsiI | ATGCAT | 1 cut(s) | 1156 |
| NspI | RCATGY | 2 cut(s) | 640, 1031 |
| PaeR7I | CTCGAG | 2 cut(s) | 390, 1289 |
| PciI | ACATGT | 1 cut(s) | 1027 |
| PciSI | GCTCTTC | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1053 |
| PfeI | GAWTC | 4 cut(s) | 62, 69, 383, 1099 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1237 |
| Ppu21I | YACGTR | 1 cut(s) | 1094 |
| PpuMI | RGGWCCY | 1 cut(s) | 412 |
| PscI | ACATGT | 1 cut(s) | 1027 |
| PshAI | GACNNNNGTC | 1 cut(s) | 428 |
| Psp124BI | GAGCTC | 2 cut(s) | 352, 1215 |
| Psp5II | RGGWCCY | 1 cut(s) | 412 |
| Psp6I | CCWGG | 2 cut(s) | 958, 1281 |
| PspGI | CCWGG | 2 cut(s) | 958, 1281 |
| PspN4I | GGNNCC | 2 cut(s) | 908, 965 |
| PspPI | GGNCC | 3 cut(s) | 412, 741, 1279 |
| PspPPI | RGGWCCY | 1 cut(s) | 412 |
| PspXI | VCTCGAGB | 1 cut(s) | 390 |
| PsuI | RGATCY | 1 cut(s) | 963 |
| SacI | GAGCTC | 2 cut(s) | 352, 1215 |
| SapI | GCTCTTC | 1 cut(s) | 33 |
| SaqAI | TTAA | 4 cut(s) | 981, 986, 1088, 1196 |
| Sau3AI | GATC | 6 cut(s) | 146, 160, 784, 859, 871, 963 |
| Sau96I | GGNCC | 3 cut(s) | 412, 741, 1279 |
| ScrFI | CCNGG | 3 cut(s) | 123, 960, 1283 |
| SduI | GDGCHC | 3 cut(s) | 272, 352, 1215 |
| SfaNI | GCATC | 4 cut(s) | 52, 208, 735, 1141 |
| Sfr274I | CTCGAG | 2 cut(s) | 390, 1289 |
| SinI | GGWCC | 2 cut(s) | 412, 1279 |
| SlaI | CTCGAG | 2 cut(s) | 390, 1289 |
| SmlI | CTYRAG | 4 cut(s) | 390, 566, 1214, 1289 |
| SmoI | CTYRAG | 4 cut(s) | 390, 566, 1214, 1289 |
| Sse9I | AATT | 5 cut(s) | 190, 526, 992, 1049, 1235 |
| SsiI | CCGC | 2 cut(s) | 33, 1003 |
| SspMI | CTAG | 4 cut(s) | 141, 372, 788, 1023 |
| SstI | GAGCTC | 2 cut(s) | 352, 1215 |
| StyD4I | CCNGG | 3 cut(s) | 121, 958, 1281 |
| StyI | CCWWGG | 1 cut(s) | 717 |
| TaaI | ACNGT | 6 cut(s) | 430, 581, 673, 833, 1082, 1325 |
| TaiI | ACGT | 2 cut(s) | 1096, 1202 |
| TaqI | TCGA | 4 cut(s) | 323, 391, 748, 1290 |
| TasI | AATT | 5 cut(s) | 190, 526, 992, 1049, 1235 |
| TfiI | GAWTC | 4 cut(s) | 62, 69, 383, 1099 |
| Tru1I | TTAA | 4 cut(s) | 981, 986, 1088, 1196 |
| Tru9I | TTAA | 4 cut(s) | 981, 986, 1088, 1196 |
| TscAI | CASTG | 1 cut(s) | 586 |
| TspDTI | ATGAA | 4 cut(s) | 306, 413, 1026, 1303 |
| TspGWI | ACGGA | 2 cut(s) | 349, 1292 |
| TspRI | CASTG | 1 cut(s) | 586 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1237 |
| VpaK11BI | GGWCC | 2 cut(s) | 412, 1279 |
| XapI | RAATTY | 1 cut(s) | 1049 |
| XbaI | TCTAGA | 1 cut(s) | 1022 |
| XceI | RCATGY | 2 cut(s) | 640, 1031 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1269 |
| XhoI | CTCGAG | 2 cut(s) | 390, 1289 |
| XmiI | GTMKAC | 1 cut(s) | 866 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1053 |
| XspI | CTAG | 4 cut(s) | 141, 372, 788, 1023 |
| Zsp2I | ATGCAT | 1 cut(s) | 1156 |