MD05G1024100.v1.1

4-hydroxyphenylpyruvate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
3942926 .. 3943126
201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1024100.v1.1.491

Sequence Viewer

Length: 201 bp
ATGACCATAGATCCCAACCACACCACCACTATAACAGCCATCGTAACCAGCAGCATCATGGGCCAGGAAAACGACACCCAATTCAACCTCGTTGGCTTCTCCATCTTTGTACGGACCAACCCCCGGTCCGACCGCTTCAAAGTCTACCGCTTCCACCACGTCGAGTTTTGGTGCACCGACGCCACCAATGCTGCCTTCTGA

Protein Analysis

67

Amino Acids

7.6

Weight (kDa)

6.23

Isoelectric Point (pI)

2.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 133, 148
AclWI GGATC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 85, 139
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 172
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 61
ApaLI GTGCAC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 51, 191
AspS9I GGNCC 3 cut(s) 61, 114, 126
AsuC2I CCSGG 1 cut(s) 124
AvaII GGWCC 2 cut(s) 114, 126
BaeGI GKGCMC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 63, 178
BccI CCATC 2 cut(s) 47, 110
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 124
BisI GCNGC 2 cut(s) 52, 192
BlsI GCNGC 2 cut(s) 53, 193
Bme1390I CCNGG 2 cut(s) 65, 124
Bme18I GGWCC 2 cut(s) 114, 126
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 61, 114, 126
BmrFI CCNGG 2 cut(s) 65, 124
BmsI GCATC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 63, 178
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 133, 148
BspANI GGCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 180
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 60, 188
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 122
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 63, 178
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 63
BtrI CACGTC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 61, 114, 126
CpoI CGGWCCG 1 cut(s) 126
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 110
CspI CGGWCCG 1 cut(s) 126
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 38, 63, 96
CviKI_1 RGCY 3 cut(s) 38, 63, 96
CviQI GTAC 1 cut(s) 110
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 114, 126
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 8, 32, 59
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 52, 192
Fsp4HI GCNGC 2 cut(s) 52, 192
GluI GCNGC 2 cut(s) 52, 192
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 124
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 61
HpaII CCGG 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 145, 174
Hpy188I TCNGA 2 cut(s) 130, 200
Hpy8I GTNNAC 2 cut(s) 145, 174
Hpy99I CGWCG 2 cut(s) 164, 182
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 188
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 50, 61, 77, 137
Lsp1109I GCAGC 2 cut(s) 63, 178
LweI GCATC 1 cut(s) 63
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 98
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 65, 124
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 60, 188
NciI CCSGG 1 cut(s) 124
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 53, 193
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 3 cut(s) 61, 114, 126
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
Rsr2I CGGWCCG 1 cut(s) 126
RsrII CGGWCCG 1 cut(s) 126
SatI GCNGC 2 cut(s) 52, 192
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 61, 114, 126
ScrFI CCNGG 2 cut(s) 65, 124
SduI GDGCHC 1 cut(s) 176
SetI ASST 2 cut(s) 90, 162
SfaNI GCATC 1 cut(s) 63
SgeI CNNG 9 cut(s) 60, 70, 76, 77, 101, 135, 136, 170, 175
SinI GGWCC 2 cut(s) 114, 126
Sse9I AATT 1 cut(s) 80
SsiI CCGC 2 cut(s) 133, 148
StyD4I CCNGG 2 cut(s) 63, 122
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 80
TseI GCWGC 2 cut(s) 51, 191
TspGWI ACGGA 1 cut(s) 127
VneI GTGCAC 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 114, 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.